Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002604

Physical Location & Seq

Genomic Coordinates Reverse (-)

24920450 .. 24922443

Gene Structure 1994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCTTGCAGGATTCGCTACTGGAAGCCACTTTCAGCCTGGAGTTGTCAAAATCAGCGGCAGAAGACAAATTCTTGGCTTGAAGCCGGGCTCATTGTACTTGTCAAGTGTCGAGTTTTCTAGAAAGAATAGAATTGCTTGCAAAGTTGTCAAAGAGGAAGATGATGTCTCGTATAAGCTTGAGGAAGTCAGAAAGAATCGGCCTTTGGTTAAGATGTGTGGCATTACTTCTGCAAGAGATGCGGCGATGGCTGCAGAAGCTGGTGCCGATTTTATTGGGATGATCATTTGGTCAAACTCTAAACGGTCCGTTTCACTTTCAGTTGCAAAAGAGATTTCGAGAGCTGCAAGGGAGTATGGGGCACAGCCTGTTGGGGTGTTTGTGGATGACGATGTGGACACAATACTAAGAGCCTCTGATGCAGCAGACCTTGAGTTTGTTCAGCTTCTTGGAGATGGTTCTCGTGCTGCTTTTCCAGCATTAGTCCAAGAGAACCGTATAATATATGTCCTTCATGCTAATGAAGATGGAACTCTCTTGAACCAAATTTCTGCCGAAGAGTGTTCTCTAGTTGATTGGGTTCTTGTGGATAGTGCAAAGGGTGGCAGTGGCAAGGGATTCAATTGGACTCGGTTTAAGCTACCAAGTATTAGAAGCAAGCACGGATGGCTTTTGGCGGGAGGAATAAAACCAGAGAATGCTTCTGAGGCTCTTTCTACTCTCAAACCCCAAGGAATTGATGTTAGTAGTGGCATTTGTGGCCAAGACGGCATCCAGAAAGACCCATTGCGAATATCTTCATTCATGAGTGCAGTTCATTCAGTAACATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004640 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0040007 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PRAI

Protein Analysis

278

Amino Acids

29.88

Weight (kDa)

7.66

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRAI	PF00697	70 - 269	5.9e-35	N-(5'phosphoribosyl)anthranilate (PRA) isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT5G05590 AT5G05590 AT5G05590 AT5G05590
fragaria_vesca	FvH4_4g21980 FvH4_7g24571
malus_domestica	MD07G1223000.v1.1
prunus_persica	Prupe.2G251100_v2.0.a1
pyrus_communis	pycom07g20160
rosa_chinensis	RchiOBHm_Chr1g0370411
rosa_laevigata	RLG00000027050
rosa_multiflora	Rmu_sc0005656.1_g000005
rosa_roxburghii	Rroxscaffold_4G00286600
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364700 Rh1BG327900 Rh1CG340900 Rh1DG358200
rosa_wichuraiana	Rw1G032090 Rw1G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	263
AciI	CCGC	3 cut(s)	57, 242, 677
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	2 cut(s)	69, 546
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	82, 541, 622
AjnI	CCWGG	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	5 cut(s)	178, 260, 344, 445, 640
AluI	AGCT	5 cut(s)	178, 260, 344, 445, 640
Alw26I	GTCTC	1 cut(s)	172
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	200, 760
ApeKI	GCWGC	4 cut(s)	251, 344, 422, 467
ApoI	RAATTY	2 cut(s)	69, 546
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
Asp700I	GAANNNNTTC	1 cut(s)	796
AspS9I	GGNCC	1 cut(s)	306
AsuC2I	CCSGG	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	762
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	92
BauI	CACGAG	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	4 cut(s)	238, 331, 434, 454
BccI	CCATC	4 cut(s)	241, 449, 521, 660
BceAI	ACGGC	1 cut(s)	784
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	2 cut(s)	120, 569
BfmI	CTRYAG	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	768
BisI	GCNGC	6 cut(s)	58, 243, 252, 345, 423, 468
BlsI	GCNGC	6 cut(s)	59, 244, 253, 346, 424, 469
Bme1390I	CCNGG	2 cut(s)	39, 87
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	39, 87
BmsI	GCATC	3 cut(s)	229, 409, 780
BpiI	GAAGAC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	60
BpuEI	CTTGAG	2 cut(s)	200, 452
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	730
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	785
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	730
BseGI	GGATG	4 cut(s)	285, 391, 671, 771
BseMI	GCAATG	1 cut(s)	785
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	4 cut(s)	238, 331, 434, 454
BsgI	GTGCAG	1 cut(s)	831
BshFI	GGCC	2 cut(s)	202, 762
BshNI	GGYRCC	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	2 cut(s)	202, 762
Bsp1286I	GDGCHC	2 cut(s)	92, 364
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	3 cut(s)	57, 242, 677
BspANI	GGCC	2 cut(s)	202, 762
BspCNI	CTCAG	1 cut(s)	697
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	1 cut(s)	265
BspMAI	CTGCAG	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	785
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	1 cut(s)	282
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	730
Bst2BI	CACGAG	1 cut(s)	462
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	306, 497
Bst6I	CTCTTC	1 cut(s)	552
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	6, 139, 659
BstDEI	CTNAG	2 cut(s)	407, 705
BstF5I	GGATG	4 cut(s)	285, 391, 671, 771
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	282
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	37, 85
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	364
BstV1I	GCAGC	4 cut(s)	238, 331, 434, 454
BstV2I	GAAGAC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	202, 762
BtgZI	GCGATG	1 cut(s)	260
BtsCI	GGATG	4 cut(s)	285, 391, 671, 771
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	3 cut(s)	6, 139, 659
CaiI	CAGNNNCTG	1 cut(s)	260
CciI	TCATGA	1 cut(s)	804
Cfr13I	GGNCC	1 cut(s)	306
CpoI	CGGWCCG	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	97
CspI	CGGWCCG	1 cut(s)	306
CviAII	CATG	2 cut(s)	515, 805
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	407, 705
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	730
Eco24I	GRGCYC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	2 cut(s)	518, 808
FaiI	YATR	8 cut(s)	174, 357, 500, 505, 507, 516, 806, 829
FatI	CATG	2 cut(s)	514, 804
FauI	CCCGC	1 cut(s)	670
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	6 cut(s)	58, 243, 252, 345, 423, 468
FokI	GGATG	4 cut(s)	292, 398, 678, 758
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	6 cut(s)	58, 243, 252, 345, 423, 468
FspBI	CTAG	2 cut(s)	120, 569
GluI	GCNGC	6 cut(s)	58, 243, 252, 345, 423, 468
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	202, 762
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	2 cut(s)	518, 808
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	4 cut(s)	12, 196, 618, 628
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	191, 418, 706
Hpy188III	TCNNGA	5 cut(s)	120, 339, 538, 775, 805
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	1 cut(s)	521
HpyCH4III	ACNGT	2 cut(s)	306, 497
HpyCH4V	TGCA	9 cut(s)	8, 141, 233, 254, 326, 347, 422, 596, 812
HpyF3I	CTNAG	2 cut(s)	407, 705
Hsp92II	CATG	2 cut(s)	518, 808
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	282
LpnPI	CCDG	9 cut(s)	6, 24, 51, 99, 246, 381, 489, 705, 788
Lsp1109I	GCAGC	4 cut(s)	238, 331, 434, 454
LweI	GCATC	3 cut(s)	229, 409, 780
MaeI	CTAG	2 cut(s)	120, 569
MaeIII	GTNAC	1 cut(s)	823
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	5 cut(s)	75, 170, 536, 569, 789
MfeI	CAATTG	1 cut(s)	622
MhlI	GDGCHC	2 cut(s)	92, 364
MlsI	TGGCCA	1 cut(s)	762
MluCI	AATT	5 cut(s)	69, 132, 546, 622, 735
MluNI	TGGCCA	1 cut(s)	762
MlyI	GAGTC	1 cut(s)	622
MnlI	CCTC	5 cut(s)	148, 175, 424, 674, 700
Mox20I	TGGCCA	1 cut(s)	762
MroXI	GAANNNNTTC	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	762
MseI	TTAA	2 cut(s)	210, 636
MslI	CAYNNNNRTG	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	39, 87
MunI	CAATTG	1 cut(s)	622
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	1 cut(s)	39
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	2 cut(s)	518, 808
NlaIV	GGNNCC	1 cut(s)	265
PagI	TCATGA	1 cut(s)	804
PctI	GAATGC	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	3 cut(s)	12, 196, 618
PkrI	GCNGC	6 cut(s)	59, 244, 253, 346, 424, 469
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	265
PspPI	GGNCC	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	519
Rsr2I	CGGWCCG	1 cut(s)	306
RsrII	CGGWCCG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	210, 636
SatI	GCNGC	6 cut(s)	58, 243, 252, 345, 423, 468
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	306
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	2 cut(s)	39, 87
SduI	GDGCHC	2 cut(s)	92, 364
SetI	ASST	6 cut(s)	180, 262, 346, 432, 447, 642
SfaNI	GCATC	3 cut(s)	229, 409, 780
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	2 cut(s)	179, 431
SmoI	CTYRAG	2 cut(s)	179, 431
Sse9I	AATT	5 cut(s)	69, 132, 546, 622, 735
SsiI	CCGC	3 cut(s)	57, 242, 677
SspMI	CTAG	2 cut(s)	120, 569
StyD4I	CCNGG	2 cut(s)	37, 85
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	2 cut(s)	306, 497
TaqI	TCGA	2 cut(s)	111, 338
TasI	AATT	5 cut(s)	69, 132, 546, 622, 735
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	2 cut(s)	60, 245
TfiI	GAWTC	3 cut(s)	12, 196, 618
Tru1I	TTAA	2 cut(s)	210, 636
Tru9I	TTAA	2 cut(s)	210, 636
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	4 cut(s)	251, 344, 422, 467
TspDTI	ATGAA	5 cut(s)	503, 537, 789, 793, 806
TspGWI	ACGGA	2 cut(s)	298, 678
TspRI	CASTG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	2 cut(s)	69, 546
XbaI	TCTAGA	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	796
XspI	CTAG	2 cut(s)	120, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.