Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002604

Physical Location & Seq

Genomic Coordinates Forward (+)

61553275 .. 61557347

Gene Structure 4073 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG340900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTGTGGCATTACATCTGCAACAGATGCAGCAATGGCAGCAGAAGCTGGTGCCGATTTTATTGGGATGATCATTTGGCCCAACTCTAAACGCTCAGTTTCACTTTCGGTTGCAAAGGAGATTTCGAGAGCTGCAAGGGAGTATGGGGCACAGCCTGTTGGGGTGTTTGTGGATGACGATGCGGACACAATACTAAGAGCCTCTGATGCAGCAGACCTTGAATTTGTTCAGCTTCATGGAGATGGTTCCCGTGCTGCTTTTCCGGCATTAGTCCAAAAGAACCGTATAATATATGTTCTTCATGCTAATGAAGATGGAACACTCTTGAATCAAATTTCTACTGAAGAGTGTTCTCTAGTTGATTGGGTTCTTGTGGATAGTGCAAAGGGTGGCAGTGGCAAAGGATTCAATTGGACACAGTTTAAGCTACCAAGTATTAGAAGCAAGCATGGTTGGCTTTTGGCAGGAGGGATAAAACCAGAGAATGCTTCTGAGGCTCTTTCTACACTCAAACCCCAAGGAATTGATGTTAGTAGTGGCATTTGTGGCCAAGATGGCATCCAGAAAGATCCGTTGCGAATATCTTCATTCATGAGTGCAGTACATACAGTAATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004640 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0040007 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PRAI

Protein Analysis

206

Amino Acids

21.91

Weight (kDa)

5.17

Isoelectric Point (pI)

27.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRAI	PF00697	2 - 198	4.1e-36	N-(5'phosphoribosyl)anthranilate (PRA) isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT5G05590 AT5G05590 AT5G05590 AT5G05590
fragaria_vesca	FvH4_4g21980 FvH4_7g24571
malus_domestica	MD07G1223000.v1.1
prunus_persica	Prupe.2G251100_v2.0.a1
pyrus_communis	pycom07g20160
rosa_chinensis	RchiOBHm_Chr1g0370411
rosa_laevigata	RLG00000027050
rosa_multiflora	Rmu_sc0005656.1_g000005
rosa_roxburghii	Rroxscaffold_4G00286600
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364700 Rh1BG327900 Rh1CG340900 Rh1DG358200
rosa_wichuraiana	Rw1G032090 Rw1G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	563
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	2 cut(s)	221, 333
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	1 cut(s)	603
AgsI	TTSAA	3 cut(s)	221, 328, 409
AluBI	AGCT	4 cut(s)	47, 131, 232, 427
AluI	AGCT	4 cut(s)	47, 131, 232, 427
AlwI	GGATC	1 cut(s)	563
AlwNI	CAGNNNCTG	1 cut(s)	47
AoxI	GGCC	2 cut(s)	77, 547
ApeKI	GCWGC	5 cut(s)	29, 38, 131, 209, 254
ApoI	RAATTY	2 cut(s)	221, 333
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
Asp700I	GAANNNNTTC	2 cut(s)	225, 583
AspS9I	GGNCC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	151
BalI	TGGCCA	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	50
BbvI	GCAGC	5 cut(s)	41, 50, 118, 221, 241
BccI	CCATC	3 cut(s)	236, 308, 548
BclI	TGATCA	1 cut(s)	69
BfaI	CTAG	1 cut(s)	356
BglI	GCCNNNNNGGC	1 cut(s)	555
BisI	GCNGC	5 cut(s)	30, 39, 132, 210, 255
BlsI	GCNGC	5 cut(s)	31, 40, 133, 211, 256
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	52, 247
BmsI	GCATC	4 cut(s)	16, 169, 196, 567
BsaJI	CCNNGG	1 cut(s)	517
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	517
BseGI	GGATG	3 cut(s)	72, 178, 558
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	108, 483
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	5 cut(s)	41, 50, 118, 221, 241
BsgI	GTGCAG	1 cut(s)	618
BshFI	GGCC	2 cut(s)	79, 549
BshNI	GGYRCC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	2 cut(s)	79, 549
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	69, 568
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	2 cut(s)	79, 549
BspCNI	CTCAG	2 cut(s)	107, 484
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	2 cut(s)	52, 247
BspPI	GGATC	1 cut(s)	563
BspT107I	GGYRCC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	39
BssECI	CCNNGG	1 cut(s)	517
BssMI	GATC	2 cut(s)	69, 568
BssT1I	CCWWGG	1 cut(s)	517
Bst4CI	ACNGT	3 cut(s)	284, 420, 610
Bst6I	CTCTTC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	3 cut(s)	94, 194, 492
BstF5I	GGATG	3 cut(s)	72, 178, 558
BstKTI	GATC	2 cut(s)	72, 571
BstMBI	GATC	2 cut(s)	69, 568
BstSLI	GKGCMC	1 cut(s)	151
BstV1I	GCAGC	5 cut(s)	41, 50, 118, 221, 241
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	79, 549
BtsCI	GGATG	3 cut(s)	72, 178, 558
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	400
Cac8I	GCNNGC	1 cut(s)	446
CaiI	CAGNNNCTG	1 cut(s)	47
CciI	TCATGA	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	602
CviAII	CATG	4 cut(s)	236, 302, 449, 592
CviQI	GTAC	1 cut(s)	602
DdeI	CTNAG	3 cut(s)	94, 194, 492
DpnI	GATC	2 cut(s)	71, 570
DpnII	GATC	2 cut(s)	69, 568
EaeI	YGGCCR	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	517
FaeI	CATG	4 cut(s)	239, 305, 452, 595
FaiI	YATR	9 cut(s)	144, 237, 287, 292, 294, 303, 450, 593, 606
FatI	CATG	4 cut(s)	235, 301, 448, 591
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	5 cut(s)	30, 39, 132, 210, 255
FokI	GGATG	3 cut(s)	79, 185, 545
Fsp4HI	GCNGC	5 cut(s)	30, 39, 132, 210, 255
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	5 cut(s)	30, 39, 132, 210, 255
HaeIII	GGCC	2 cut(s)	79, 549
HapII	CCGG	1 cut(s)	263
Hin1II	CATG	4 cut(s)	239, 305, 452, 595
HinfI	GANTC	2 cut(s)	328, 405
HpaII	CCGG	1 cut(s)	263
Hpy188I	TCNGA	2 cut(s)	205, 493
Hpy188III	TCNNGA	4 cut(s)	126, 325, 562, 592
HpyCH4III	ACNGT	3 cut(s)	284, 420, 610
HpyCH4V	TGCA	7 cut(s)	20, 29, 113, 134, 209, 383, 599
HpyF3I	CTNAG	3 cut(s)	94, 194, 492
Hsp92II	CATG	4 cut(s)	239, 305, 452, 595
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	2 cut(s)	69, 568
LpnPI	CCDG	6 cut(s)	33, 168, 276, 450, 492, 575
Lsp1109I	GCAGC	5 cut(s)	41, 50, 118, 221, 241
LweI	GCATC	4 cut(s)	16, 169, 196, 567
MaeI	CTAG	1 cut(s)	356
MalI	GATC	2 cut(s)	71, 570
MboI	GATC	2 cut(s)	69, 568
MboII	GAAGA	4 cut(s)	290, 323, 356, 576
MfeI	CAATTG	1 cut(s)	409
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	4 cut(s)	221, 333, 409, 522
MluNI	TGGCCA	1 cut(s)	549
MnlI	CCTC	3 cut(s)	211, 461, 487
Mox20I	TGGCCA	1 cut(s)	549
MroXI	GAANNNNTTC	2 cut(s)	225, 583
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	2 cut(s)	240, 306
Msp20I	TGGCCA	1 cut(s)	549
MspI	CCGG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	409
Mva1269I	GAATGC	1 cut(s)	490
NdeII	GATC	2 cut(s)	69, 568
NlaIII	CATG	4 cut(s)	239, 305, 452, 595
NlaIV	GGNNCC	2 cut(s)	52, 247
PagI	TCATGA	1 cut(s)	591
PctI	GAATGC	1 cut(s)	490
PdmI	GAANNNNTTC	2 cut(s)	225, 583
PfeI	GAWTC	2 cut(s)	328, 405
PkrI	GCNGC	5 cut(s)	31, 40, 133, 211, 256
PspN4I	GGNNCC	2 cut(s)	52, 247
PspPI	GGNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	568
RsaI	GTAC	1 cut(s)	603
RsaNI	GTAC	1 cut(s)	602
RseI	CAYNNNNRTG	2 cut(s)	240, 306
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	5 cut(s)	30, 39, 132, 210, 255
Sau3AI	GATC	2 cut(s)	69, 568
Sau96I	GGNCC	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	5 cut(s)	49, 133, 219, 234, 429
SfaNI	GCATC	4 cut(s)	16, 169, 196, 567
SmiMI	CAYNNNNRTG	2 cut(s)	240, 306
Sse9I	AATT	4 cut(s)	221, 333, 409, 522
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	3 cut(s)	284, 420, 610
TaqI	TCGA	1 cut(s)	125
TasI	AATT	4 cut(s)	221, 333, 409, 522
TatI	WGTACW	1 cut(s)	601
TfiI	GAWTC	2 cut(s)	328, 405
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	5 cut(s)	29, 38, 131, 209, 254
TspDTI	ATGAA	5 cut(s)	224, 290, 324, 576, 580
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	1 cut(s)	400
XapI	RAATTY	2 cut(s)	221, 333
XmnI	GAANNNNTTC	2 cut(s)	225, 583
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.