Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002604

Physical Location & Seq

Genomic Coordinates Forward (+)

58218042 .. 58218832

Gene Structure 791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG358200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCAGCAGAAGCTGGTGCCGATTTTATTGGGATGATCATTTGGCCCAACTCTAAACGCTCAGTTTCACTTTCGGTTGCAAAGGAGATTTCGAGAGCTGCAAGGGAGTATGGGGCACAGCCTGTTGGGGTGTTTGTGGATGACGATGCGGACACAATACTAAGAGCCTCTGATGCAGCAGACCTTGAATTTGTTCAGCTTCATGGAGATGGTTCCCGTGCTGCTTTTCCGGCATTAGTCCAAAAGAACCGTATAATATATGTTCTTCATGCTAATGAAGATGGAACACTCTTGAATCAAATTTCTACTGAAGAGTGTTCTCTAGTTGATTGGGTTCTTGTGGATAGTGCAAAGGGTGGCAGTGGCAAAGGATTCAATTGGACACAGTTTAAGCTACCAAGTATTAGAAGCAAGCATGGTTGGCTTTTGGCAGGAGGGATAAAACCAGAGAATGCTTCTGAGGCTCTTTCTACACTCAAACCCCAAGGAATTGATGTTAGTAGTGGCATTTGTGGCCAAGATGGCATCCAGAAAGATCCGTTGCGAATATCTTCATTCATGAGTGCAGTACATACAGTAATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004640 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0040007 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PRAI

Protein Analysis

195

Amino Acids

20.89

Weight (kDa)

5.33

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRAI	PF00697	3 - 187	2.4e-33	N-(5'phosphoribosyl)anthranilate (PRA) isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT5G05590 AT5G05590 AT5G05590 AT5G05590
fragaria_vesca	FvH4_4g21980 FvH4_7g24571
malus_domestica	MD07G1223000.v1.1
prunus_persica	Prupe.2G251100_v2.0.a1
pyrus_communis	pycom07g20160
rosa_chinensis	RchiOBHm_Chr1g0370411
rosa_laevigata	RLG00000027050
rosa_multiflora	Rmu_sc0005656.1_g000005
rosa_roxburghii	Rroxscaffold_4G00286600
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364700 Rh1BG327900 Rh1CG340900 Rh1DG358200
rosa_wichuraiana	Rw1G032090 Rw1G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	17
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	2 cut(s)	188, 300
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	570
AgsI	TTSAA	3 cut(s)	188, 295, 376
AluBI	AGCT	4 cut(s)	14, 98, 199, 394
AluI	AGCT	4 cut(s)	14, 98, 199, 394
AlwI	GGATC	1 cut(s)	530
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	2 cut(s)	44, 514
ApeKI	GCWGC	4 cut(s)	5, 98, 176, 221
ApoI	RAATTY	2 cut(s)	188, 300
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
Asp700I	GAANNNNTTC	2 cut(s)	192, 550
AspS9I	GGNCC	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	516
BanI	GGYRCC	1 cut(s)	17
BbvI	GCAGC	4 cut(s)	17, 85, 188, 208
BccI	CCATC	3 cut(s)	203, 275, 515
BclI	TGATCA	1 cut(s)	36
BfaI	CTAG	1 cut(s)	323
BglI	GCCNNNNNGGC	1 cut(s)	522
BisI	GCNGC	4 cut(s)	6, 99, 177, 222
BlsI	GCNGC	4 cut(s)	7, 100, 178, 223
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	19, 214
BmsI	GCATC	3 cut(s)	136, 163, 534
BsaJI	CCNNGG	1 cut(s)	484
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	3 cut(s)	39, 145, 525
BseMII	CTCAG	2 cut(s)	75, 450
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	4 cut(s)	17, 85, 188, 208
BsgI	GTGCAG	1 cut(s)	585
BshFI	GGCC	2 cut(s)	46, 516
BshNI	GGYRCC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	46, 516
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	36, 535
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	2 cut(s)	46, 516
BspCNI	CTCAG	2 cut(s)	74, 451
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	2 cut(s)	19, 214
BspPI	GGATC	1 cut(s)	530
BspT107I	GGYRCC	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	36, 535
BssT1I	CCWWGG	1 cut(s)	484
Bst4CI	ACNGT	3 cut(s)	251, 387, 577
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	413
BstDEI	CTNAG	3 cut(s)	61, 161, 459
BstF5I	GGATG	3 cut(s)	39, 145, 525
BstKTI	GATC	2 cut(s)	39, 538
BstMBI	GATC	2 cut(s)	36, 535
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 173, 230, 421, 461, 513, 522
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	4 cut(s)	17, 85, 188, 208
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	46, 516
BtsCI	GGATG	3 cut(s)	39, 145, 525
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	413
CaiI	CAGNNNCTG	1 cut(s)	14
CciI	TCATGA	1 cut(s)	558
Cfr13I	GGNCC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	4 cut(s)	203, 269, 416, 559
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	3 cut(s)	61, 161, 459
DpnI	GATC	2 cut(s)	38, 537
DpnII	GATC	2 cut(s)	36, 535
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco130I	CCWWGG	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	4 cut(s)	206, 272, 419, 562
FaiI	YATR	9 cut(s)	111, 204, 254, 259, 261, 270, 417, 560, 573
FatI	CATG	4 cut(s)	202, 268, 415, 558
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	4 cut(s)	6, 99, 177, 222
FokI	GGATG	3 cut(s)	46, 152, 512
Fsp4HI	GCNGC	4 cut(s)	6, 99, 177, 222
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	4 cut(s)	6, 99, 177, 222
HaeIII	GGCC	2 cut(s)	46, 516
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	4 cut(s)	206, 272, 419, 562
HinfI	GANTC	2 cut(s)	295, 372
HpaII	CCGG	1 cut(s)	230
Hpy188I	TCNGA	2 cut(s)	172, 460
Hpy188III	TCNNGA	4 cut(s)	93, 292, 529, 559
HpyCH4III	ACNGT	3 cut(s)	251, 387, 577
HpyCH4V	TGCA	5 cut(s)	80, 101, 176, 350, 566
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 173, 230, 421, 461, 513, 522
HpyF3I	CTNAG	3 cut(s)	61, 161, 459
Hsp92II	CATG	4 cut(s)	206, 272, 419, 562
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 535
LpnPI	CCDG	5 cut(s)	135, 243, 417, 459, 542
Lsp1109I	GCAGC	4 cut(s)	17, 85, 188, 208
LweI	GCATC	3 cut(s)	136, 163, 534
MaeI	CTAG	1 cut(s)	323
MalI	GATC	2 cut(s)	38, 537
MboI	GATC	2 cut(s)	36, 535
MboII	GAAGA	4 cut(s)	257, 290, 323, 543
MfeI	CAATTG	1 cut(s)	376
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	516
MluCI	AATT	4 cut(s)	188, 300, 376, 489
MluNI	TGGCCA	1 cut(s)	516
MnlI	CCTC	3 cut(s)	178, 428, 454
Mox20I	TGGCCA	1 cut(s)	516
MroXI	GAANNNNTTC	2 cut(s)	192, 550
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	2 cut(s)	207, 273
Msp20I	TGGCCA	1 cut(s)	516
MspI	CCGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	457
MwoI	GCNNNNNNNGC	7 cut(s)	11, 173, 230, 421, 461, 513, 522
NdeII	GATC	2 cut(s)	36, 535
NlaIII	CATG	4 cut(s)	206, 272, 419, 562
NlaIV	GGNNCC	2 cut(s)	19, 214
PagI	TCATGA	1 cut(s)	558
PctI	GAATGC	1 cut(s)	457
PdmI	GAANNNNTTC	2 cut(s)	192, 550
PfeI	GAWTC	2 cut(s)	295, 372
PkrI	GCNGC	4 cut(s)	7, 100, 178, 223
PspN4I	GGNNCC	2 cut(s)	19, 214
PspPI	GGNCC	1 cut(s)	45
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
RseI	CAYNNNNRTG	2 cut(s)	207, 273
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	4 cut(s)	6, 99, 177, 222
Sau3AI	GATC	2 cut(s)	36, 535
Sau96I	GGNCC	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	5 cut(s)	16, 100, 186, 201, 396
SfaNI	GCATC	3 cut(s)	136, 163, 534
SmiMI	CAYNNNNRTG	2 cut(s)	207, 273
Sse9I	AATT	4 cut(s)	188, 300, 376, 489
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	251, 387, 577
TaqI	TCGA	1 cut(s)	92
TasI	AATT	4 cut(s)	188, 300, 376, 489
TatI	WGTACW	1 cut(s)	568
TfiI	GAWTC	2 cut(s)	295, 372
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	4 cut(s)	5, 98, 176, 221
TspDTI	ATGAA	5 cut(s)	191, 257, 291, 543, 547
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	2 cut(s)	188, 300
XmnI	GAANNNNTTC	2 cut(s)	192, 550
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.