Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002604

Physical Location & Seq

Genomic Coordinates Forward (+)

22345613 .. 22347228

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20160.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCTTACAGGATTAACTACTGGGACCCACATTCAGCCCGAACTAGTCGGAATCTGTCATACAAGGCAAATTCCTGGTTTAAAGCATGCCCCATTGTGCTTTTCAAATGCGAAGTTATGTAGAAAGAAGGTTATTACTTGCAGAGCTATCAAGGCAGAAGATGTAACCTCGAAGCACGAGGAACGCAAAAAGAACAGGCCTTTAGTTAAGATGTGTGGCATTACCTCTGCTAGAGATGCAGCTTTGGCAGCAGAAGCCGGTGCTGACTTCATTGGGATGATTATTTGGCCCAACTCTAAACGCTCTGTTTCACTTTCTGTTGCAAAGGAGATTTCAAGAGTTGCAAGAGAGTATGGGGCGCAGCCTGTTGGGGTATTTGTGGATGATGATGCAGAGACAATATCAAGAGCCAAGGATGCATCCGACCTTGAATTTGTTCAGCTTCATGGAGATGGCTCCCGAGCGGCCTTTCCTGCATTAGTTGGAGGGCACCGTATAATCTATGTTCTTCATGCTAATGAAGATGGAAGTCTTTTAAACCAGATTTCCGCTGAACAATGTTCTCTAGTTGATTGGATTCTTGTGGATAGTGCAAAGGGTGGCAGCGGTAAAGGATTTGATTGGACGCGGTTTAAGCTACCGAACATTAGAAGCAAACACGGGTGGCTCTTGGCAGGAGGAATAAAGCCTGAGAATGCTGGTGAGGCTCTTTCTATCCTCAAACCTCAAGGAATTGATGTGAGTAGCGGCATTTGTGGCGCCTGCGGCATCCAGAAGGATCAGTTGCGAATATCTTCCTTCATGAATGCAGTTCATTCAGTAAACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004640 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0016053 GO:0016853 GO:0016860 GO:0016861 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0040007 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PRAI

Protein Analysis

277

Amino Acids

29.71

Weight (kDa)

8.88

Isoelectric Point (pI)

28.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G07780 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT1G29410 AT5G05590 AT5G05590 AT5G05590 AT5G05590
fragaria_vesca	FvH4_4g21980 FvH4_7g24571
malus_domestica	MD07G1223000.v1.1
prunus_persica	Prupe.2G251100_v2.0.a1
pyrus_communis	pycom07g20160
rosa_chinensis	RchiOBHm_Chr1g0370411
rosa_laevigata	RLG00000027050
rosa_multiflora	Rmu_sc0005656.1_g000005
rosa_roxburghii	Rroxscaffold_4G00286600
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG364700 Rh1BG327900 Rh1CG340900 Rh1DG358200
rosa_wichuraiana	Rw1G032090 Rw1G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	489, 758
AccBSI	CCGCTC	1 cut(s)	464
AccII	CGCG	1 cut(s)	628
AciI	CCGC	6 cut(s)	464, 549, 606, 628, 747, 765
AclWI	GGATC	1 cut(s)	786
AcsI	RAATTY	2 cut(s)	69, 431
AcyI	GRCGYC	1 cut(s)	759
AgsI	TTSAA	3 cut(s)	105, 336, 431
AhlI	ACTAGT	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	4 cut(s)	146, 242, 442, 637
AluI	AGCT	4 cut(s)	146, 242, 442, 637
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	786
Ama87I	CYCGRG	1 cut(s)	459
AoxI	GGCC	3 cut(s)	197, 287, 465
ApeKI	GCWGC	4 cut(s)	239, 248, 361, 603
ApoI	RAATTY	2 cut(s)	69, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
Asp700I	GAANNNNTTC	2 cut(s)	435, 793
AspLEI	GCGC	2 cut(s)	361, 761
AspS9I	GGNCC	2 cut(s)	24, 288
AsuHPI	GGTGA	1 cut(s)	713
AvaI	CYCGRG	1 cut(s)	459
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	492
BanI	GGYRCC	2 cut(s)	489, 758
BauI	CACGAG	1 cut(s)	176
BbvI	GCAGC	4 cut(s)	251, 260, 373, 615
BccI	CCATC	2 cut(s)	446, 518
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	43
BfaI	CTAG	3 cut(s)	44, 231, 566
BfoI	RGCGCY	1 cut(s)	762
BisI	GCNGC	7 cut(s)	240, 249, 362, 465, 604, 748, 766
BlsI	GCNGC	7 cut(s)	241, 250, 363, 466, 605, 749, 767
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	459
BmgT120I	GGNCC	2 cut(s)	24, 288
BmiI	GGNNCC	5 cut(s)	25, 26, 457, 491, 760
BmrFI	CCNGG	1 cut(s)	75
BmrI	ACTGGG	1 cut(s)	30
BmsI	GCATC	5 cut(s)	226, 379, 406, 428, 777
BmuI	ACTGGG	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	711
BsaHI	GRCGYC	1 cut(s)	759
BsaJI	CCNNGG	1 cut(s)	411
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	5 cut(s)	282, 388, 419, 421, 768
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	492
BseXI	GCAGC	4 cut(s)	251, 260, 373, 615
Bsh1236I	CGCG	1 cut(s)	628
BshFI	GGCC	3 cut(s)	199, 289, 467
BshNI	GGYRCC	2 cut(s)	489, 758
BsiHKCI	CYCGRG	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	2 cut(s)	700, 811
BsnI	GGCC	3 cut(s)	199, 289, 467
BsoBI	CYCGRG	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	778
BspACI	CCGC	6 cut(s)	464, 549, 606, 628, 747, 765
BspANI	GGCC	3 cut(s)	199, 289, 467
BspCNI	CTCAG	1 cut(s)	682
BspFNI	CGCG	1 cut(s)	628
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	5 cut(s)	25, 26, 457, 491, 760
BspPI	GGATC	1 cut(s)	786
BspT107I	GGYRCC	2 cut(s)	489, 758
BsrBI	CCGCTC	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	1 cut(s)	778
BssNI	GRCGYC	1 cut(s)	759
BssSI	CACGAG	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	494
BstACI	GRCGYC	1 cut(s)	759
BstC8I	GCNNGC	2 cut(s)	87, 763
BstDEI	CTNAG	1 cut(s)	690
BstF5I	GGATG	5 cut(s)	282, 388, 419, 421, 768
BstFNI	CGCG	1 cut(s)	628
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	2 cut(s)	361, 761
BstKTI	GATC	1 cut(s)	781
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	1 cut(s)	778
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	492
BstUI	CGCG	1 cut(s)	628
BstV1I	GCAGC	4 cut(s)	251, 260, 373, 615
BsuRI	GGCC	3 cut(s)	199, 289, 467
BtsCI	GGATG	5 cut(s)	282, 388, 419, 421, 768
Cac8I	GCNNGC	2 cut(s)	87, 763
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	2 cut(s)	361, 761
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	24, 288
CseI	GACGC	1 cut(s)	634
CviAII	CATG	4 cut(s)	86, 446, 512, 802
DdeI	CTNAG	1 cut(s)	690
DinI	GGCGCC	1 cut(s)	760
DpnI	GATC	1 cut(s)	780
DpnII	GATC	1 cut(s)	778
DraI	TTTAAA	2 cut(s)	81, 537
Eco130I	CCWWGG	1 cut(s)	411
Eco147I	AGGCCT	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	411
EcoT22I	ATGCAT	1 cut(s)	421
EgeI	GGCGCC	1 cut(s)	760
EheI	GGCGCC	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	4 cut(s)	89, 449, 515, 805
FaiI	YATR	9 cut(s)	60, 87, 118, 354, 447, 497, 504, 513, 803
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	4 cut(s)	85, 445, 511, 801
Fnu4HI	GCNGC	7 cut(s)	240, 249, 362, 465, 604, 748, 766
FokI	GGATG	5 cut(s)	289, 395, 406, 428, 755
Fsp4HI	GCNGC	7 cut(s)	240, 249, 362, 465, 604, 748, 766
FspBI	CTAG	3 cut(s)	44, 231, 566
GlaI	GCGC	2 cut(s)	360, 760
GluI	GCNGC	7 cut(s)	240, 249, 362, 465, 604, 748, 766
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	3 cut(s)	199, 289, 467
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	2 cut(s)	361, 761
Hin1I	GRCGYC	1 cut(s)	759
Hin1II	CATG	4 cut(s)	89, 449, 515, 805
Hin6I	GCGC	2 cut(s)	359, 759
HinP1I	GCGC	2 cut(s)	359, 759
HinfI	GANTC	2 cut(s)	51, 577
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	713
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	2 cut(s)	50, 424
Hpy188III	TCNNGA	5 cut(s)	336, 405, 459, 772, 802
Hpy8I	GTNNAC	1 cut(s)	823
HpyAV	CCTTC	3 cut(s)	121, 769, 808
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	9 cut(s)	141, 239, 323, 344, 392, 419, 476, 593, 809
HpyF3I	CTNAG	1 cut(s)	690
Hsp92I	GRCGYC	1 cut(s)	759
Hsp92II	CATG	4 cut(s)	89, 449, 515, 805
HspAI	GCGC	2 cut(s)	359, 759
KasI	GGCGCC	1 cut(s)	758
KflI	GGGWCCC	1 cut(s)	24
Kzo9I	GATC	1 cut(s)	778
LmnI	GCTCC	1 cut(s)	461
Lsp1109I	GCAGC	4 cut(s)	251, 260, 373, 615
LweI	GCATC	5 cut(s)	226, 379, 406, 428, 777
MaeI	CTAG	3 cut(s)	44, 231, 566
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	1 cut(s)	780
MbiI	CCGCTC	1 cut(s)	464
MboI	GATC	1 cut(s)	778
MboII	GAAGA	4 cut(s)	170, 500, 533, 786
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	3 cut(s)	69, 431, 732
Mly113I	GGCGCC	1 cut(s)	759
MmeI	TCCRAC	3 cut(s)	28, 447, 463
MnlI	CCTC	8 cut(s)	172, 178, 235, 479, 671, 697, 728, 735
Mph1103I	ATGCAT	1 cut(s)	421
MroXI	GAANNNNTTC	2 cut(s)	435, 793
MseI	TTAA	5 cut(s)	14, 80, 207, 536, 633
MslI	CAYNNNNRTG	3 cut(s)	275, 450, 516
MspA1I	CMGCKG	2 cut(s)	551, 606
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	75
Mva1269I	GAATGC	2 cut(s)	700, 811
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	628
NarI	GGCGCC	1 cut(s)	759
NdeII	GATC	1 cut(s)	778
NlaIII	CATG	4 cut(s)	89, 449, 515, 805
NlaIV	GGNNCC	5 cut(s)	25, 26, 457, 491, 760
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PagI	TCATGA	1 cut(s)	801
PceI	AGGCCT	1 cut(s)	199
PctI	GAATGC	2 cut(s)	700, 811
PdmI	GAANNNNTTC	2 cut(s)	435, 793
PfeI	GAWTC	2 cut(s)	51, 577
PkrI	GCNGC	7 cut(s)	241, 250, 363, 466, 605, 749, 767
PluTI	GGCGCC	1 cut(s)	762
PpuMI	RGGWCCY	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	5 cut(s)	25, 26, 457, 491, 760
PspPI	GGNCC	2 cut(s)	24, 288
PspPPI	RGGWCCY	1 cut(s)	24
RseI	CAYNNNNRTG	3 cut(s)	275, 450, 516
SaqAI	TTAA	5 cut(s)	14, 80, 207, 536, 633
SatI	GCNGC	7 cut(s)	240, 249, 362, 465, 604, 748, 766
Sau3AI	GATC	1 cut(s)	778
Sau96I	GGNCC	2 cut(s)	24, 288
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	492
SetI	ASST	9 cut(s)	132, 148, 170, 227, 244, 429, 444, 639, 727
SfaNI	GCATC	5 cut(s)	226, 379, 406, 428, 777
SfoI	GGCGCC	1 cut(s)	760
SinI	GGWCC	1 cut(s)	24
SmiMI	CAYNNNNRTG	3 cut(s)	275, 450, 516
SmlI	CTYRAG	1 cut(s)	726
SmoI	CTYRAG	1 cut(s)	726
SpeI	ACTAGT	1 cut(s)	43
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	3 cut(s)	69, 431, 732
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	6 cut(s)	464, 549, 606, 628, 747, 765
SspDI	GGCGCC	1 cut(s)	758
SspMI	CTAG	3 cut(s)	44, 231, 566
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	494
TaqI	TCGA	1 cut(s)	170
TasI	AATT	3 cut(s)	69, 431, 732
TauI	GCSGC	3 cut(s)	467, 750, 768
TfiI	GAWTC	2 cut(s)	51, 577
Tru1I	TTAA	5 cut(s)	14, 80, 207, 536, 633
Tru9I	TTAA	5 cut(s)	14, 80, 207, 536, 633
TseI	GCWGC	4 cut(s)	239, 248, 361, 603
TspDTI	ATGAA	7 cut(s)	259, 434, 500, 534, 790, 803, 818
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	2 cut(s)	69, 431
XceI	RCATGY	1 cut(s)	89
XmnI	GAANNNNTTC	2 cut(s)	435, 793
XspI	CTAG	3 cut(s)	44, 231, 566
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.