Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006128

Physical Location & Seq

Genomic Coordinates Reverse (-)

10324745 .. 10326848

Gene Structure 2104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCCGTCCGGTGCGAAGAAAAGAAAGGCGTTGAAGAAGAAGAAGCAACAGGAAGCGATTGGAACAAGTATCAACGGAAATGATGAACATGGAAGCCAAGATGGGAGGGGAAGTGATAGCAGTTTGAGTTCTCCTGGTTCTCAAGGAAATCAAGAATTTGGGACTAAAGATTCATCTGCTCTTCTATCTTCTGCTGTGGTGAAAGGTGCTTCTAAAGAGATATCTAGAGATGCAGGTGTTACTCAGGGACTAGGACCCAAAACTGGCAATGCTATTGTGGAAAAATCAACTAACTCCTCTTCTGATAACCGTACTCGCCCCGCCAAAAATGTAGCTTGTGGTAATTCAGTTACAGAAATCACTCCAGTTGTTGATTCTGTTAAACCTGTGGTTTCTATCTCCAAAACAGTGACTTCTGAAAAGAGTGGGCTTGTTGAGACCTCAACACACTCAAATTTGGTCAAAAAGAAGTCTGAGAAAGATGAAGAGTATCATCCGTCTCCGGTATTGGAAAACAATAATAGTAAGGTGGTTATGCTTCCAAGATCTGCTCCTGAAACAAGCAAAAAAGTAGAGAGCGTAAGAAAATCTGAAGTTCCAGTATCCCCTGAGGAAAAGCCTCTTTTGCTACCTGGTCCACCAGTCGTCCGAAGGACTTCATGGCTAAGCTGCTGCGGTTTGTTTGATGCTATGACTGGATCTGATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

24.89

Weight (kDa)

9.36

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29530 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310
fragaria_vesca	FvH4_3g06440 FvH4_3g06440
malus_domestica	MD05G1292200.v1.1 MD10G1268000.v1.1
prunus_persica	Prupe.4G073200_v2.0.a1
pyrus_communis	pycom10g22430
rosa_chinensis	RchiOBHm_Chr5g0012861
rosa_laevigata	RLG00000031962
rosa_multiflora	Rmu_sc0002365.1_g000030 Rmu_sc0010496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063740
rosa_rugosa	Rorug05G0004700 Rorug05G0004700 Rorug05G0004800.1
rosa_samantha	Rh5AG098700 Rh5BG095400 Rh5CG107600 Rh5DG094200
rosa_wichuraiana	Rw5G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	224
AciI	CCGC	2 cut(s)	321, 675
AclWI	GGATC	1 cut(s)	706
AcsI	RAATTY	2 cut(s)	155, 454
AcuI	CTGAAG	1 cut(s)	612
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	2 cut(s)	133, 631
AluBI	AGCT	2 cut(s)	335, 669
AluI	AGCT	2 cut(s)	335, 669
Alw26I	GTCTC	2 cut(s)	431, 504
AlwI	GGATC	1 cut(s)	706
ApeKI	GCWGC	2 cut(s)	669, 672
ApoI	RAATTY	2 cut(s)	155, 454
Asp700I	GAANNNNTTC	1 cut(s)	655
AspS9I	GGNCC	2 cut(s)	254, 635
AsuHPI	GGTGA	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	254, 635
AxyI	CCTNAGG	1 cut(s)	609
BbvI	GCAGC	2 cut(s)	656, 659
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	135, 633
BciVI	GTATCC	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	431, 504
BfaI	CTAG	2 cut(s)	225, 251
BfuAI	ACCTGC	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	613
BglII	AGATCT	1 cut(s)	545
BisI	GCNGC	2 cut(s)	670, 673
BlpI	GCTNAGC	1 cut(s)	665
BlsI	GCNGC	2 cut(s)	671, 674
Bme1390I	CCNGG	2 cut(s)	135, 633
Bme18I	GGWCC	2 cut(s)	254, 635
BmgT120I	GGNCC	2 cut(s)	254, 635
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	135, 633
BmsI	GCATC	2 cut(s)	220, 676
BpmI	CTGGAG	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	665
BpuEI	CTTGAG	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	431
BsaWI	WCCGGW	2 cut(s)	8, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	5 cut(s)	268, 365, 599, 641, 700
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	135, 633
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	3 cut(s)	257, 465, 600
BseNI	ACTGG	5 cut(s)	268, 365, 599, 641, 700
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	2 cut(s)	656, 659
BsiSI	CCGG	2 cut(s)	9, 503
BslFI	GGGAC	2 cut(s)	175, 261
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	431, 504
BsmBI	CGTCTC	1 cut(s)	504
BsmFI	GGGAC	2 cut(s)	175, 261
Bso31I	GGTCTC	1 cut(s)	431
Bsp143I	GATC	2 cut(s)	545, 698
Bsp1720I	GCTNAGC	1 cut(s)	665
BspACI	CCGC	2 cut(s)	321, 675
BspCNI	CTCAG	3 cut(s)	256, 466, 601
BspLI	GGNNCC	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	706
BspQI	GCTCTTC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	5 cut(s)	268, 365, 599, 641, 700
BssMI	GATC	2 cut(s)	545, 698
Bst2UI	CCWGG	2 cut(s)	135, 633
Bst4CI	ACNGT	2 cut(s)	311, 409
Bst6I	CTCTTC	3 cut(s)	186, 304, 480
BstDEI	CTNAG	4 cut(s)	243, 474, 609, 665
BstF5I	GGATG	1 cut(s)	493
BstKTI	GATC	2 cut(s)	548, 701
BstMAI	GTCTC	2 cut(s)	431, 504
BstMBI	GATC	2 cut(s)	545, 698
BstMWI	GCNNNNNNNGC	1 cut(s)	625
BstNI	CCWGG	2 cut(s)	135, 633
BstSCI	CCNGG	2 cut(s)	133, 631
BstV1I	GCAGC	2 cut(s)	656, 659
BstX2I	RGATCY	2 cut(s)	545, 698
BstYI	RGATCY	2 cut(s)	545, 698
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	224
Cfr13I	GGNCC	2 cut(s)	254, 635
CsiI	ACCWGGT	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	2 cut(s)	89, 660
CviJI	RGCY	6 cut(s)	96, 335, 430, 619, 664, 669
CviKI_1	RGCY	6 cut(s)	96, 335, 430, 619, 664, 669
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	4 cut(s)	243, 474, 609, 665
DpnI	GATC	2 cut(s)	547, 700
DpnII	GATC	2 cut(s)	545, 698
Eam1104I	CTCTTC	3 cut(s)	186, 304, 480
EarI	CTCTTC	3 cut(s)	186, 304, 480
Eco31I	GGTCTC	1 cut(s)	431
Eco32I	GATATC	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	254, 635
Eco57I	CTGAAG	1 cut(s)	612
Eco81I	CCTNAGG	1 cut(s)	609
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	133, 631
EcoRV	GATATC	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	2 cut(s)	92, 663
FaiI	YATR	4 cut(s)	90, 536, 661, 692
FaqI	GGGAC	2 cut(s)	175, 261
FatI	CATG	2 cut(s)	88, 659
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	670, 673
FokI	GGATG	1 cut(s)	480
Fsp4HI	GCNGC	2 cut(s)	670, 673
FspBI	CTAG	2 cut(s)	225, 251
GluI	GCNGC	2 cut(s)	670, 673
GsuI	CTGGAG	1 cut(s)	348
HapII	CCGG	2 cut(s)	9, 503
Hin1II	CATG	2 cut(s)	92, 663
HinfI	GANTC	2 cut(s)	170, 374
HpaII	CCGG	2 cut(s)	9, 503
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	638
Hpy188I	TCNGA	6 cut(s)	304, 418, 475, 592, 650, 703
Hpy188III	TCNNGA	3 cut(s)	152, 225, 554
Hpy8I	GTNNAC	1 cut(s)	638
HpyAV	CCTTC	1 cut(s)	645
HpyCH4III	ACNGT	2 cut(s)	311, 409
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	625
HpyF3I	CTNAG	4 cut(s)	243, 474, 609, 665
Hsp92II	CATG	2 cut(s)	92, 663
Kzo9I	GATC	2 cut(s)	545, 698
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	2 cut(s)	656, 659
LweI	GCATC	2 cut(s)	220, 676
MabI	ACCWGGT	1 cut(s)	631
MaeI	CTAG	2 cut(s)	225, 251
MaeIII	GTNAC	3 cut(s)	238, 349, 409
MalI	GATC	2 cut(s)	547, 700
MboI	GATC	2 cut(s)	545, 698
MboII	GAAGA	8 cut(s)	28, 46, 49, 52, 173, 180, 291, 497
MflI	RGATCY	2 cut(s)	545, 698
MluCI	AATT	3 cut(s)	155, 343, 454
MnlI	CCTC	5 cut(s)	99, 307, 451, 604, 630
MroXI	GAANNNNTTC	1 cut(s)	655
MseI	TTAA	1 cut(s)	381
MspI	CCGG	2 cut(s)	9, 503
MspR9I	CCNGG	2 cut(s)	135, 633
MvaI	CCWGG	2 cut(s)	135, 633
MwoI	GCNNNNNNNGC	1 cut(s)	625
NdeII	GATC	2 cut(s)	545, 698
NlaIII	CATG	2 cut(s)	92, 663
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	409
PaqCI	CACCTGC	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	655
PfeI	GAWTC	2 cut(s)	170, 374
PkrI	GCNGC	2 cut(s)	671, 674
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	133, 631
PspGI	CCWGG	2 cut(s)	133, 631
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	254, 635
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	545, 698
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	2 cut(s)	670, 673
Sau3AI	GATC	2 cut(s)	545, 698
Sau96I	GGNCC	2 cut(s)	254, 635
ScrFI	CCNGG	2 cut(s)	135, 633
SetI	ASST	8 cut(s)	208, 238, 337, 388, 443, 531, 634, 671
SexAI	ACCWGGT	1 cut(s)	631
SfaNI	GCATC	2 cut(s)	220, 676
SinI	GGWCC	2 cut(s)	254, 635
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	3 cut(s)	155, 343, 454
SsiI	CCGC	2 cut(s)	321, 675
SspMI	CTAG	2 cut(s)	225, 251
StyD4I	CCNGG	2 cut(s)	133, 631
TaaI	ACNGT	2 cut(s)	311, 409
TasI	AATT	3 cut(s)	155, 343, 454
TfiI	GAWTC	2 cut(s)	170, 374
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	2 cut(s)	669, 672
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	4 cut(s)	99, 162, 498, 648
TspGWI	ACGGA	2 cut(s)	90, 486
TspRI	CASTG	1 cut(s)	414
VpaK11BI	GGWCC	2 cut(s)	254, 635
XapI	RAATTY	2 cut(s)	155, 454
XbaI	TCTAGA	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	655
XspI	CTAG	2 cut(s)	225, 251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.