Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006128

Physical Location & Seq

Genomic Coordinates Forward (+)

8647947 .. 8652245

Gene Structure 4299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG094200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGCCGTCAGGTGCCAAGAGGAGAAAGGCTGCCAAGAAAAAGAAGGAGAAGGAGAATCAGACCCAAAACGGGAGTTCATCAACCACCAAAAGCAACCCTCAAGGAGACGTAAGTGATGGTGGTGAGGTTGGCTCTAAACCTCAAGCTAAGGAGTGGAGACCAGTCACTCGAGCTAAGTCCGTAGAGGGAGAATCTAGTGATGCTGAGGCTGTTCGGAAAGATGGTGGTGTTGGAGTTGAGAGGGATTCGAAGGAGGGTTCCAACAGCAACAAGCGTGCTGGGTCTGGAAAGGAATCAGTTAAAGGCTCCAGTTGTAGCAGTAGCAGTGGTAGGAGTAGTTCAGATGACGAGTCTCGTGTTGTTGAAAGGAGAAGGAAGGAGAAGGGTGATGCTACCGTTTCGGAGGAAAAAAAACCTGCTAGTGATTTGGTTAAGTCGGTTGATTCTCTACTAGCAGAAGTGACTCACTCTACTAATGAGGCACCAGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTTGGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTCGGCTGAGAAGACTCCAAGTTTAGTTGCAGAGAAGACCCCTTCGGCTGAGAAGACTCCAAGTTTAGTCGCAGAGAAGGCCCCTTCGGCTGAGAAGACTCCAAGTTTAGTCGCAGAGAAGGCCGCTTCGGCTGAGAAGACTCCAAGTTTAGTTGCAGAGAAGGCCCCTTCGCTTGATTCTGATAAGCCTGTGGTGACTGTTCACTTTACAGAAACTACTCCAGTTGACGGTCTAGTGATCTCTGGTACAGTTGTAAAACCGGCGTTGGAGAGTGGTGCAGAGAAGTCTTTAGAAACTTTGACTGATTCGCTACCAGAGAAAATCGAGAGTATAGTGTGTCCCCCGCTAATTGAGAATGGTAAGGCATCTCCGACTGTGGTCGAATCTGTATCTAAAGAAAATGGGAGTAAAGTATTGCCATCAGTAGGTGTGGTGGAATCTGTATCTAAAGAAAATGGGAGTAAAATATTGCCATCAGTAGGTGTCTCTCCCGCTCAAACTAGTAATGATGCTGGATCCATTAAAGATTCTGAAATTCCAGAATATTCTGAAAGCCAGCCTCTAGTAGCTCCTGCCCCACGAGTGGTGGAAAAAACTTCTTGCTTTGGTTGCTGCGGAATTCTGGACGTGATAACAGGCTCCAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

405

Amino Acids

41.95

Weight (kDa)

5.86

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29530 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310
fragaria_vesca	FvH4_3g06440 FvH4_3g06440
malus_domestica	MD05G1292200.v1.1 MD10G1268000.v1.1
prunus_persica	Prupe.4G073200_v2.0.a1
pyrus_communis	pycom10g22430
rosa_chinensis	RchiOBHm_Chr5g0012861
rosa_laevigata	RLG00000031962
rosa_multiflora	Rmu_sc0002365.1_g000030 Rmu_sc0010496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063740
rosa_rugosa	Rorug05G0004700 Rorug05G0004700 Rorug05G0004800.1
rosa_samantha	Rh5AG098700 Rh5BG095400 Rh5CG107600 Rh5DG094200
rosa_wichuraiana	Rw5G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AccB1I	GGYRCC	2 cut(s)	11, 481
AccBSI	CCGCTC	1 cut(s)	1061
AciI	CCGC	4 cut(s)	690, 911, 1059, 1182
AclWI	GGATC	2 cut(s)	1077, 1090
AcsI	RAATTY	2 cut(s)	1101, 1185
AfaI	GTAC	1 cut(s)	814
AfiI	CCNNNNNNNGG	5 cut(s)	69, 794, 992, 1046, 1150
AgsI	TTSAA	1 cut(s)	365
AhlI	ACTAGT	1 cut(s)	1067
AjiI	CACGTC	1 cut(s)	1195
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	4 cut(s)	146, 173, 488, 1136
AluI	AGCT	4 cut(s)	146, 173, 488, 1136
Alw26I	GTCTC	4 cut(s)	99, 151, 357, 1057
AlwI	GGATC	2 cut(s)	1077, 1090
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	5 cut(s)	519, 561, 645, 687, 729
ApeKI	GCWGC	2 cut(s)	29, 1179
ApoI	RAATTY	2 cut(s)	1101, 1185
AspS9I	GGNCC	4 cut(s)	520, 562, 646, 730
AsuHPI	GGTGA	3 cut(s)	134, 398, 772
AsuII	TTCGAA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	168
BaeI	ACNNNNGTAYC	2 cut(s)	804, 837
BamHI	GGATCC	1 cut(s)	1082
BanI	GGYRCC	2 cut(s)	11, 481
BauI	CACGAG	2 cut(s)	354, 1146
BbsI	GAAGAC	7 cut(s)	500, 542, 584, 608, 626, 668, 710
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	16, 1166
BccI	CCATC	4 cut(s)	110, 215, 994, 1048
BcoDI	GTCTC	4 cut(s)	99, 151, 357, 1057
BcuI	ACTAGT	1 cut(s)	1067
BfaI	CTAG	6 cut(s)	195, 420, 452, 800, 1068, 1130
BfuAI	ACCTGC	1 cut(s)	424
BglI	GCCNNNNNGGC	4 cut(s)	527, 569, 653, 695
BisI	GCNGC	3 cut(s)	30, 690, 1180
BlsI	GCNGC	3 cut(s)	31, 691, 1181
BmeT110I	CYCGRG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	1195
BmgT120I	GGNCC	4 cut(s)	520, 562, 646, 730
BmsI	GCATC	4 cut(s)	190, 379, 941, 1066
BoxI	GACNNNNGTC	1 cut(s)	944
BpiI	GAAGAC	7 cut(s)	500, 542, 584, 608, 626, 668, 710
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	3 cut(s)	292, 771, 1192
Bpu10I	CCTNAGC	2 cut(s)	147, 204
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	84, 126
BsaI	GGTCTC	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 794, 992, 1046, 1150
Bse118I	RCCGGY	1 cut(s)	826
Bse1I	ACTGG	4 cut(s)	161, 309, 788, 1209
BseLI	CCNNNNNNNGG	5 cut(s)	69, 794, 992, 1046, 1150
BseMII	CTCAG	7 cut(s)	195, 480, 522, 564, 606, 648, 690
BseNI	ACTGG	4 cut(s)	161, 309, 788, 1209
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	16, 1166
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	5 cut(s)	521, 563, 647, 689, 731
BshNI	GGYRCC	2 cut(s)	11, 481
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	827
BslFI	GGGAC	1 cut(s)	891
BslI	CCNNNNNNNGG	5 cut(s)	69, 794, 992, 1046, 1150
BsmAI	GTCTC	4 cut(s)	99, 151, 357, 1057
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	891
BsnI	GGCC	5 cut(s)	521, 563, 647, 689, 731
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	804, 1082
BspACI	CCGC	4 cut(s)	690, 911, 1059, 1182
BspANI	GGCC	5 cut(s)	521, 563, 647, 689, 731
BspCNI	CTCAG	7 cut(s)	196, 481, 523, 565, 607, 649, 691
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	1077, 1090
BspT104I	TTCGAA	1 cut(s)	248
BspT107I	GGYRCC	2 cut(s)	11, 481
BspTNI	GGTCTC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	1061
BsrFI	RCCGGY	1 cut(s)	826
BsrI	ACTGG	4 cut(s)	161, 309, 788, 1209
BssAI	RCCGGY	1 cut(s)	826
BssMI	GATC	2 cut(s)	804, 1082
BssSI	CACGAG	2 cut(s)	354, 1146
Bst2BI	CACGAG	2 cut(s)	354, 1146
Bst4CI	ACNGT	5 cut(s)	397, 766, 797, 817, 943
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	276, 1124
BstDEI	CTNAG	9 cut(s)	147, 174, 204, 489, 531, 573, 615, 657, 699
BstKTI	GATC	2 cut(s)	807, 1085
BstMAI	GTCTC	4 cut(s)	99, 151, 357, 1057
BstMBI	GATC	2 cut(s)	804, 1082
BstPAI	GACNNNNGTC	1 cut(s)	944
BstV1I	GCAGC	2 cut(s)	16, 1166
BstV2I	GAAGAC	7 cut(s)	500, 542, 584, 608, 626, 668, 710
BstX2I	RGATCY	1 cut(s)	1082
BstYI	RGATCY	1 cut(s)	1082
BsuRI	GGCC	5 cut(s)	521, 563, 647, 689, 731
BtrI	CACGTC	1 cut(s)	1195
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	276, 1124
Cfr10I	RCCGGY	1 cut(s)	826
Cfr13I	GGNCC	4 cut(s)	520, 562, 646, 730
Csp6I	GTAC	1 cut(s)	813
CviQI	GTAC	1 cut(s)	813
DdeI	CTNAG	9 cut(s)	147, 174, 204, 489, 531, 573, 615, 657, 699
DpnI	GATC	2 cut(s)	806, 1084
DpnII	GATC	2 cut(s)	804, 1082
Eco31I	GGTCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	168
EcoO109I	RGGNCCY	4 cut(s)	520, 562, 646, 730
EcoRI	GAATTC	1 cut(s)	1185
Esp3I	CGTCTC	1 cut(s)	99
FaiI	YATR	1 cut(s)	899
FaqI	GGGAC	1 cut(s)	891
FauI	CCCGC	2 cut(s)	918, 1066
Fnu4HI	GCNGC	3 cut(s)	30, 690, 1180
Fsp4HI	GCNGC	3 cut(s)	30, 690, 1180
FspBI	CTAG	6 cut(s)	195, 420, 452, 800, 1068, 1130
GluI	GCNGC	3 cut(s)	30, 690, 1180
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	3 cut(s)	292, 771, 1192
HaeIII	GGCC	5 cut(s)	521, 563, 647, 689, 731
HapII	CCGG	1 cut(s)	827
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HpaII	CCGG	1 cut(s)	827
HphI	GGTGA	3 cut(s)	134, 398, 772
Hpy166II	GTNNAC	2 cut(s)	769, 793
Hpy188I	TCNGA	8 cut(s)	60, 216, 343, 403, 748, 939, 1099, 1117
Hpy188III	TCNNGA	4 cut(s)	285, 892, 1106, 1190
Hpy8I	GTNNAC	2 cut(s)	769, 793
HpyCH4III	ACNGT	5 cut(s)	397, 766, 797, 817, 943
HpyCH4IV	ACGT	2 cut(s)	108, 1194
HpyCH4V	TGCA	5 cut(s)	512, 554, 596, 722, 845
HpyF3I	CTNAG	9 cut(s)	147, 174, 204, 489, 531, 573, 615, 657, 699
HpySE526I	ACGT	2 cut(s)	108, 1194
Kzo9I	GATC	2 cut(s)	804, 1082
LmnI	GCTCC	3 cut(s)	311, 1141, 1211
Lsp1109I	GCAGC	2 cut(s)	16, 1166
LweI	GCATC	4 cut(s)	190, 379, 941, 1066
MaeI	CTAG	6 cut(s)	195, 420, 452, 800, 1068, 1130
MaeII	ACGT	2 cut(s)	108, 1194
MaeIII	GTNAC	3 cut(s)	163, 460, 760
MalI	GATC	2 cut(s)	806, 1084
MbiI	CCGCTC	1 cut(s)	1061
MboI	GATC	2 cut(s)	804, 1082
MboII	GAAGA	7 cut(s)	505, 547, 589, 613, 631, 673, 715
MflI	RGATCY	1 cut(s)	1082
MluCI	AATT	3 cut(s)	915, 1101, 1185
MlyI	GAGTC	6 cut(s)	359, 457, 574, 616, 658, 700
MmeI	TCCRAC	4 cut(s)	211, 285, 813, 962
MseI	TTAA	3 cut(s)	300, 432, 1089
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	827
NdeII	GATC	2 cut(s)	804, 1082
NmuCI	GTSAC	3 cut(s)	163, 460, 760
NspV	TTCGAA	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	31, 691, 1181
PleI	GAGTC	6 cut(s)	358, 457, 574, 616, 658, 700
PpsI	GAGTC	6 cut(s)	358, 457, 574, 616, 658, 700
PshAI	GACNNNNGTC	1 cut(s)	944
PspFI	CCCAGC	1 cut(s)	278
PspPI	GGNCC	4 cut(s)	520, 562, 646, 730
PspXI	VCTCGAGB	1 cut(s)	168
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PsuI	RGATCY	1 cut(s)	1082
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	814
RsaNI	GTAC	1 cut(s)	813
SaqAI	TTAA	3 cut(s)	300, 432, 1089
SatI	GCNGC	3 cut(s)	30, 690, 1180
Sau3AI	GATC	2 cut(s)	804, 1082
Sau96I	GGNCC	4 cut(s)	520, 562, 646, 730
SchI	GAGTC	6 cut(s)	359, 457, 574, 616, 658, 700
SfaNI	GCATC	4 cut(s)	190, 379, 941, 1066
Sfr274I	CTCGAG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	168
SmlI	CTYRAG	3 cut(s)	99, 141, 168
SmoI	CTYRAG	3 cut(s)	99, 141, 168
SpeI	ACTAGT	1 cut(s)	1067
Sse9I	AATT	3 cut(s)	915, 1101, 1185
SsiI	CCGC	4 cut(s)	690, 911, 1059, 1182
SspI	AATATT	2 cut(s)	1035, 1112
SspMI	CTAG	6 cut(s)	195, 420, 452, 800, 1068, 1130
TaaI	ACNGT	5 cut(s)	397, 766, 797, 817, 943
TaiI	ACGT	2 cut(s)	111, 1197
TaqI	TCGA	4 cut(s)	169, 248, 891, 948
TasI	AATT	3 cut(s)	915, 1101, 1185
TauI	GCSGC	1 cut(s)	692
Tru1I	TTAA	3 cut(s)	300, 432, 1089
Tru9I	TTAA	3 cut(s)	300, 432, 1089
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	3 cut(s)	163, 460, 760
TseI	GCWGC	2 cut(s)	29, 1179
Tsp45I	GTSAC	3 cut(s)	163, 460, 760
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	1101, 1185
XhoI	CTCGAG	1 cut(s)	168
XspI	CTAG	6 cut(s)	195, 420, 452, 800, 1068, 1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.