Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006128

Physical Location & Seq

Genomic Coordinates Forward (+)

9390059 .. 9391690

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G008630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGCCGTCAGGTGCCAAGAGGAGAAAGGCTGCCAAGAAAAAGAAGGAGAAGGAGAATCAGACCCAAAACGGGAGTTCATCAACCACCAAAAGCAACCCTCAAGGAGACGTAAGTGATGGTGGTGAGGTTGGCTCTAAACCTCAAGCTAAGGAGTGGAGACCAGTCACTCGAGCTAAGTCCGTAGAGGGAGAATCTAGTGATGCTGAGGCTGTTCGGAAAGATGGTGGTGTTGGAATTGAGAGGGATTCGAAGGAGGGTTCCAAGAGCAACAAGCGTGCTGGGTCTGGAAAGGAATCAGTTAAAGGCTCCAGTAGTAGCAGTAGCAGTGGTAGGAGTAGTTCAGATGACGAGTCTCGTGTTGTTGAAAGGAGAAGGAAGGAGAAGGGTGATGCTACCGTTTCGGAGGAAAAAAAACCTGCTAGTGATTTGGTTAAGTCGGTTGATTCTCTACTAGCAGAAGTGACTCACTCTACTAATGAGGCACCAGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTTGGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTCGGCTGAGAAGACTCCAAGTTTAGTTGCAGAGAAGGCCCCTTCGGCTGAGAAGACTCCAAGTTTAGTTGCAGGGAAGGCCCCTTCGGCTGAGAAGACTGCAAGTTTAGTTGCAGAGAAGGCCCCTTCGCTTGATTCTGATAAGCCTGTGGTGACTGTTCACTTTACAGAAACTACTCCAGTTGACGGTCTAGTGATCTCTGGTACAGTTGTAAAACCGGCGTTGGAGAGTGGTGCAGAGAAGTCTTTAGAAACTTTGACTGATTCGCTACCAGAGAAAATCGAGAGTATAGTGTGTCCCCCGCTAATTGAGAATGGTAAGGCATCTCCGACTGTGGTGGAATCTGTATCTAAAGAAAATGGGAGTAAAGTATTGCCATCAGTAGGTGTGGTGGAATCTGTATCTAAAGAAAATGGGAGTAAAATATTGCCATCAGTAGGTGTCTCTCCCGCTCAAACTAGTAATGATGCTGGATCCATTAAAGATTCTGAAATTCCAGAATATTCTGAAAGCCAGCCTCTAGTAGCTCCTGCCCCACGAGTGGTGGAAAAAACTTCTTGCTTTGGTTGCTGCGGAATTCTGGACGTGATAACAGGCTCCAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

391

Amino Acids

40.45

Weight (kDa)

6.35

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29530 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310
fragaria_vesca	FvH4_3g06440 FvH4_3g06440
malus_domestica	MD05G1292200.v1.1 MD10G1268000.v1.1
prunus_persica	Prupe.4G073200_v2.0.a1
pyrus_communis	pycom10g22430
rosa_chinensis	RchiOBHm_Chr5g0012861
rosa_laevigata	RLG00000031962
rosa_multiflora	Rmu_sc0002365.1_g000030 Rmu_sc0010496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063740
rosa_rugosa	Rorug05G0004700 Rorug05G0004700 Rorug05G0004800.1
rosa_samantha	Rh5AG098700 Rh5BG095400 Rh5CG107600 Rh5DG094200
rosa_wichuraiana	Rw5G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AccB1I	GGYRCC	2 cut(s)	11, 481
AccBSI	CCGCTC	1 cut(s)	1019
AciI	CCGC	3 cut(s)	869, 1017, 1140
AclWI	GGATC	2 cut(s)	1035, 1048
AcsI	RAATTY	2 cut(s)	1059, 1143
AfaI	GTAC	1 cut(s)	772
AfiI	CCNNNNNNNGG	5 cut(s)	69, 752, 950, 1004, 1108
AgsI	TTSAA	1 cut(s)	365
AhlI	ACTAGT	1 cut(s)	1025
AjiI	CACGTC	1 cut(s)	1153
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	4 cut(s)	146, 173, 488, 1094
AluI	AGCT	4 cut(s)	146, 173, 488, 1094
Alw26I	GTCTC	4 cut(s)	99, 151, 357, 1015
AlwI	GGATC	2 cut(s)	1035, 1048
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	5 cut(s)	519, 561, 603, 645, 687
ApeKI	GCWGC	2 cut(s)	29, 1137
ApoI	RAATTY	2 cut(s)	1059, 1143
AspS9I	GGNCC	5 cut(s)	520, 562, 604, 646, 688
AsuHPI	GGTGA	3 cut(s)	134, 398, 730
AsuII	TTCGAA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	168
BaeI	ACNNNNGTAYC	2 cut(s)	762, 795
BamHI	GGATCC	1 cut(s)	1040
BanI	GGYRCC	2 cut(s)	11, 481
BauI	CACGAG	2 cut(s)	354, 1104
BbsI	GAAGAC	5 cut(s)	500, 542, 584, 626, 668
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	16, 1124
BccI	CCATC	4 cut(s)	110, 215, 952, 1006
BcoDI	GTCTC	4 cut(s)	99, 151, 357, 1015
BcuI	ACTAGT	1 cut(s)	1025
BfaI	CTAG	6 cut(s)	195, 420, 452, 758, 1026, 1088
BfuAI	ACCTGC	1 cut(s)	424
BglI	GCCNNNNNGGC	4 cut(s)	527, 569, 611, 653
BisI	GCNGC	2 cut(s)	30, 1138
BlsI	GCNGC	2 cut(s)	31, 1139
BmeT110I	CYCGRG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	1153
BmgT120I	GGNCC	5 cut(s)	520, 562, 604, 646, 688
BmsI	GCATC	4 cut(s)	190, 379, 899, 1024
BpiI	GAAGAC	5 cut(s)	500, 542, 584, 626, 668
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	3 cut(s)	292, 729, 1150
Bpu10I	CCTNAGC	2 cut(s)	147, 204
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	84, 126
BsaI	GGTCTC	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 752, 950, 1004, 1108
Bse118I	RCCGGY	1 cut(s)	784
Bse1I	ACTGG	4 cut(s)	161, 309, 746, 1167
BseLI	CCNNNNNNNGG	5 cut(s)	69, 752, 950, 1004, 1108
BseMII	CTCAG	6 cut(s)	195, 480, 522, 564, 606, 648
BseNI	ACTGG	4 cut(s)	161, 309, 746, 1167
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	16, 1124
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	822
BshFI	GGCC	5 cut(s)	521, 563, 605, 647, 689
BshNI	GGYRCC	2 cut(s)	11, 481
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	785
BslFI	GGGAC	1 cut(s)	849
BslI	CCNNNNNNNGG	5 cut(s)	69, 752, 950, 1004, 1108
BsmAI	GTCTC	4 cut(s)	99, 151, 357, 1015
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	849
BsnI	GGCC	5 cut(s)	521, 563, 605, 647, 689
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	762, 1040
BspACI	CCGC	3 cut(s)	869, 1017, 1140
BspANI	GGCC	5 cut(s)	521, 563, 605, 647, 689
BspCNI	CTCAG	6 cut(s)	196, 481, 523, 565, 607, 649
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	1035, 1048
BspT104I	TTCGAA	1 cut(s)	248
BspT107I	GGYRCC	2 cut(s)	11, 481
BspTNI	GGTCTC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	1019
BsrFI	RCCGGY	1 cut(s)	784
BsrI	ACTGG	4 cut(s)	161, 309, 746, 1167
BssAI	RCCGGY	1 cut(s)	784
BssMI	GATC	2 cut(s)	762, 1040
BssSI	CACGAG	2 cut(s)	354, 1104
Bst2BI	CACGAG	2 cut(s)	354, 1104
Bst4CI	ACNGT	5 cut(s)	397, 724, 755, 775, 901
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	276, 1082
BstDEI	CTNAG	8 cut(s)	147, 174, 204, 489, 531, 573, 615, 657
BstKTI	GATC	2 cut(s)	765, 1043
BstMAI	GTCTC	4 cut(s)	99, 151, 357, 1015
BstMBI	GATC	2 cut(s)	762, 1040
BstV1I	GCAGC	2 cut(s)	16, 1124
BstV2I	GAAGAC	5 cut(s)	500, 542, 584, 626, 668
BstX2I	RGATCY	1 cut(s)	1040
BstYI	RGATCY	1 cut(s)	1040
BsuRI	GGCC	5 cut(s)	521, 563, 605, 647, 689
BtrI	CACGTC	1 cut(s)	1153
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	276, 1082
Cfr10I	RCCGGY	1 cut(s)	784
Cfr13I	GGNCC	5 cut(s)	520, 562, 604, 646, 688
Csp6I	GTAC	1 cut(s)	771
CviQI	GTAC	1 cut(s)	771
DdeI	CTNAG	8 cut(s)	147, 174, 204, 489, 531, 573, 615, 657
DpnI	GATC	2 cut(s)	764, 1042
DpnII	GATC	2 cut(s)	762, 1040
Eco31I	GGTCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	168
EcoO109I	RGGNCCY	5 cut(s)	520, 562, 604, 646, 688
EcoRI	GAATTC	1 cut(s)	1143
Esp3I	CGTCTC	1 cut(s)	99
FaiI	YATR	1 cut(s)	857
FaqI	GGGAC	1 cut(s)	849
FauI	CCCGC	2 cut(s)	876, 1024
Fnu4HI	GCNGC	2 cut(s)	30, 1138
Fsp4HI	GCNGC	2 cut(s)	30, 1138
FspBI	CTAG	6 cut(s)	195, 420, 452, 758, 1026, 1088
GluI	GCNGC	2 cut(s)	30, 1138
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	3 cut(s)	292, 729, 1150
HaeIII	GGCC	5 cut(s)	521, 563, 605, 647, 689
HapII	CCGG	1 cut(s)	785
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HpaII	CCGG	1 cut(s)	785
HphI	GGTGA	3 cut(s)	134, 398, 730
Hpy166II	GTNNAC	2 cut(s)	727, 751
Hpy188I	TCNGA	8 cut(s)	60, 216, 343, 403, 706, 897, 1057, 1075
Hpy188III	TCNNGA	4 cut(s)	285, 850, 1064, 1148
Hpy8I	GTNNAC	2 cut(s)	727, 751
HpyCH4III	ACNGT	5 cut(s)	397, 724, 755, 775, 901
HpyCH4IV	ACGT	2 cut(s)	108, 1152
HpyCH4V	TGCA	7 cut(s)	512, 554, 596, 638, 668, 680, 803
HpyF3I	CTNAG	8 cut(s)	147, 174, 204, 489, 531, 573, 615, 657
HpySE526I	ACGT	2 cut(s)	108, 1152
Kzo9I	GATC	2 cut(s)	762, 1040
LmnI	GCTCC	3 cut(s)	311, 1099, 1169
Lsp1109I	GCAGC	2 cut(s)	16, 1124
LweI	GCATC	4 cut(s)	190, 379, 899, 1024
MaeI	CTAG	6 cut(s)	195, 420, 452, 758, 1026, 1088
MaeII	ACGT	2 cut(s)	108, 1152
MaeIII	GTNAC	3 cut(s)	163, 460, 718
MalI	GATC	2 cut(s)	764, 1042
MbiI	CCGCTC	1 cut(s)	1019
MboI	GATC	2 cut(s)	762, 1040
MboII	GAAGA	5 cut(s)	505, 547, 589, 631, 673
MflI	RGATCY	1 cut(s)	1040
MluCI	AATT	4 cut(s)	234, 873, 1059, 1143
MlyI	GAGTC	4 cut(s)	359, 457, 574, 616
MmeI	TCCRAC	3 cut(s)	211, 771, 920
MseI	TTAA	3 cut(s)	300, 432, 1047
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	785
NdeII	GATC	2 cut(s)	762, 1040
NmuCI	GTSAC	3 cut(s)	163, 460, 718
NspV	TTCGAA	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	31, 1139
PleI	GAGTC	4 cut(s)	358, 457, 574, 616
PpsI	GAGTC	4 cut(s)	358, 457, 574, 616
PspFI	CCCAGC	1 cut(s)	278
PspPI	GGNCC	5 cut(s)	520, 562, 604, 646, 688
PspXI	VCTCGAGB	1 cut(s)	168
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PsuI	RGATCY	1 cut(s)	1040
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	772
RsaNI	GTAC	1 cut(s)	771
SaqAI	TTAA	3 cut(s)	300, 432, 1047
SatI	GCNGC	2 cut(s)	30, 1138
Sau3AI	GATC	2 cut(s)	762, 1040
Sau96I	GGNCC	5 cut(s)	520, 562, 604, 646, 688
SchI	GAGTC	4 cut(s)	359, 457, 574, 616
SfaNI	GCATC	4 cut(s)	190, 379, 899, 1024
Sfr274I	CTCGAG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	168
SmlI	CTYRAG	3 cut(s)	99, 141, 168
SmoI	CTYRAG	3 cut(s)	99, 141, 168
SpeI	ACTAGT	1 cut(s)	1025
Sse9I	AATT	4 cut(s)	234, 873, 1059, 1143
SsiI	CCGC	3 cut(s)	869, 1017, 1140
SspI	AATATT	2 cut(s)	993, 1070
SspMI	CTAG	6 cut(s)	195, 420, 452, 758, 1026, 1088
TaaI	ACNGT	5 cut(s)	397, 724, 755, 775, 901
TaiI	ACGT	2 cut(s)	111, 1155
TaqI	TCGA	3 cut(s)	169, 248, 849
TasI	AATT	4 cut(s)	234, 873, 1059, 1143
Tru1I	TTAA	3 cut(s)	300, 432, 1047
Tru9I	TTAA	3 cut(s)	300, 432, 1047
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	3 cut(s)	163, 460, 718
TseI	GCWGC	2 cut(s)	29, 1137
Tsp45I	GTSAC	3 cut(s)	163, 460, 718
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	1059, 1143
XhoI	CTCGAG	1 cut(s)	168
XspI	CTAG	6 cut(s)	195, 420, 452, 758, 1026, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.