Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006128

Physical Location & Seq

Genomic Coordinates Forward (+)

3581953 .. 3585652

Gene Structure 3700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G073200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCCATCAGGTGCTAAGAAGAGAAAAGCTGCCAAGAAAAAGAAAGAAAAGGAAACCCACAATGGCAAATCCTCAACCGACGACAATCCTCAAGGAAATAATGAAGTGACCTCCCAAGATGAGAAAGGAAGTGATGGTGGTGAGGTTGGCTGCACTGCATTTCAGGAGCATCATAACCAGCAGGATCCATTTAAGAAGAGCAATGAGGAGCTGGGCGAGCGAGGCCCATCATCAGTTCCACCAGTTGTTTCTGAGGATAAGTCCGGGAAGGGAGCTCCTAGTGGTGTGGAGGCTGTTCAGAAGGTTGGATTGAAGAACGATGATGGTGTTAGAATTGAGAGGGAATTGAAACAGGATTCCGCAAGCAAAAATGTGATTATTGAGGATGCGAAATCTGCAAAGGGATCACATAATGGGGATGATAGAAGCTCAAGCAGTAGTAGTTCAGATGACGAGTCTCGAGTTGTTGAGAGGAGGCAGAAGGAGGATTCCTATGCTTCAGTTTCAGAGGAGAAACCTCATAATGATTTGGTAAGGTCAATTGATTCTTCACCACCAGAAGTGATTCAGACTACCGAAGGTGCACCAGCTGTGAAGAATACAAGTTCAGTTACAGAGAGTACACCGGTTGAAAGTTCAGTTTTCTCCAATGTTGTAGTAAAAACGGGGTTGGAGAATGGTGCAGAGAAATTGTTGCCTACTGGAACTCCTGTAACTTTGACGGATCCTGTATTAAAGAAAATTGAGAATAGAACATCTCCGTTACTGAATGAGACTGCTAAGGCGTCTTCAAGTATGGTGGAATCTGTTTCTAGAGAAAATGAGAGTAAAGTATTGCCATCATTAGGTACTTCTCGGGCTCAAGTTAGTAATGATGCTGAATCCAGCAAAAATCCTGAGATTCCAGAATATTCTGAAAAGCAGCCTCTGGTAACTCCGGCCCCACCAGTTCCCCGAAAAACATCTTGGTTTAGCTGCTGTGGAATTCTGGAAGTGATAACAGGCTCCAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

339

Amino Acids

36.1

Weight (kDa)

5.43

Isoelectric Point (pI)

60.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29530 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310
fragaria_vesca	FvH4_3g06440 FvH4_3g06440
malus_domestica	MD05G1292200.v1.1 MD10G1268000.v1.1
prunus_persica	Prupe.4G073200_v2.0.a1
pyrus_communis	pycom10g22430
rosa_chinensis	RchiOBHm_Chr5g0012861
rosa_laevigata	RLG00000031962
rosa_multiflora	Rmu_sc0002365.1_g000030 Rmu_sc0010496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063740
rosa_rugosa	Rorug05G0004700 Rorug05G0004700 Rorug05G0004800.1
rosa_samantha	Rh5AG098700 Rh5BG095400 Rh5CG107600 Rh5DG094200
rosa_wichuraiana	Rw5G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	5 cut(s)	179, 192, 412, 719, 732
AcsI	RAATTY	1 cut(s)	984
AcuI	CTGAAG	1 cut(s)	483
AcyI	GRCGYC	1 cut(s)	785
AfaI	GTAC	2 cut(s)	622, 850
AfiI	CCNNNNNNNGG	1 cut(s)	845
AgeI	ACCGGT	1 cut(s)	625
AgsI	TTSAA	4 cut(s)	313, 349, 632, 792
AjuI	GAANNNNNNNTTGG	2 cut(s)	949, 981
AluBI	AGCT	6 cut(s)	29, 211, 275, 429, 590, 975
AluI	AGCT	6 cut(s)	29, 211, 275, 429, 590, 975
Alw21I	GWGCWC	2 cut(s)	277, 586
Alw26I	GTCTC	2 cut(s)	462, 767
Alw44I	GTGCAC	1 cut(s)	582
AlwI	GGATC	5 cut(s)	179, 192, 412, 719, 732
AlwNI	CAGNNNCTG	1 cut(s)	928
Ama87I	CYCGRG	2 cut(s)	459, 855
AoxI	GGCC	2 cut(s)	223, 939
ApaLI	GTGCAC	1 cut(s)	582
ApeKI	GCWGC	4 cut(s)	29, 150, 922, 975
ApoI	RAATTY	1 cut(s)	984
AsiGI	ACCGGT	1 cut(s)	625
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	224, 940
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	152, 543
AvaI	CYCGRG	2 cut(s)	459, 855
BaeGI	GKGCMC	1 cut(s)	586
BamHI	GGATCC	2 cut(s)	184, 724
BanII	GRGCYC	2 cut(s)	277, 862
BbsI	GAAGAC	1 cut(s)	780
Bbv12I	GWGCWC	2 cut(s)	277, 586
BbvI	GCAGC	4 cut(s)	16, 137, 934, 962
BccI	CCATC	5 cut(s)	13, 128, 235, 317, 847
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	2 cut(s)	462, 767
BfaI	CTAG	2 cut(s)	279, 813
BisI	GCNGC	4 cut(s)	30, 151, 923, 976
BlsI	GCNGC	4 cut(s)	31, 152, 924, 977
Bme1390I	CCNGG	1 cut(s)	265
BmeT110I	CYCGRG	2 cut(s)	459, 855
BmgT120I	GGNCC	2 cut(s)	224, 940
BmiI	GGNNCC	4 cut(s)	186, 726, 942, 1006
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	3 cut(s)	178, 376, 865
BpiI	GAAGAC	1 cut(s)	780
BpmI	CTGGAG	1 cut(s)	991
Bpu10I	CCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	3 cut(s)	75, 415, 846
BpuMI	CCSGG	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	785
BsaWI	WCCGGW	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	845
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	4 cut(s)	242, 706, 947, 1008
Bse3DI	GCAATG	1 cut(s)	208
BseGI	GGATG	2 cut(s)	391, 424
BseLI	CCNNNNNNNGG	1 cut(s)	845
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	243, 888
BseNI	ACTGG	4 cut(s)	242, 706, 947, 1008
BseRI	GAGGAG	3 cut(s)	221, 487, 524
BseSI	GKGCMC	1 cut(s)	586
BseXI	GCAGC	4 cut(s)	16, 137, 934, 962
BseYI	CCCAGC	1 cut(s)	211
BsgI	GTGCAG	2 cut(s)	136, 702
BshFI	GGCC	2 cut(s)	225, 941
BshTI	ACCGGT	1 cut(s)	625
BsiHKAI	GWGCWC	2 cut(s)	277, 586
BsiHKCI	CYCGRG	2 cut(s)	459, 855
BsiSI	CCGG	3 cut(s)	264, 626, 938
BslI	CCNNNNNNNGG	1 cut(s)	845
BsmAI	GTCTC	2 cut(s)	462, 767
BsnI	GGCC	2 cut(s)	225, 941
BsoBI	CYCGRG	2 cut(s)	459, 855
Bsp1286I	GDGCHC	3 cut(s)	277, 586, 862
Bsp143I	GATC	3 cut(s)	184, 404, 724
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	2 cut(s)	225, 941
BspCNI	CTCAG	2 cut(s)	244, 889
BspLI	GGNNCC	4 cut(s)	186, 726, 942, 1006
BspPI	GGATC	5 cut(s)	179, 192, 412, 719, 732
BspQI	GCTCTTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	4 cut(s)	242, 706, 947, 1008
BssAI	RCCGGY	1 cut(s)	625
BssMI	GATC	3 cut(s)	184, 404, 724
BssNI	GRCGYC	1 cut(s)	785
Bst6I	CTCTTC	2 cut(s)	14, 191
BstACI	GRCGYC	1 cut(s)	785
BstC8I	GCNNGC	2 cut(s)	218, 364
BstDEI	CTNAG	4 cut(s)	15, 252, 780, 897
BstF5I	GGATG	2 cut(s)	391, 424
BstKTI	GATC	3 cut(s)	187, 407, 727
BstMAI	GTCTC	2 cut(s)	462, 767
BstMBI	GATC	3 cut(s)	184, 404, 724
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 222, 395
BstSCI	CCNGG	1 cut(s)	263
BstSLI	GKGCMC	1 cut(s)	586
BstV1I	GCAGC	4 cut(s)	16, 137, 934, 962
BstV2I	GAAGAC	1 cut(s)	780
BstX2I	RGATCY	2 cut(s)	184, 724
BstYI	RGATCY	2 cut(s)	184, 724
BsuRI	GGCC	2 cut(s)	225, 941
BtsCI	GGATG	2 cut(s)	391, 424
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	218, 364
CaiI	CAGNNNCTG	1 cut(s)	928
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	2 cut(s)	224, 940
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	2 cut(s)	621, 849
CspAI	ACCGGT	1 cut(s)	625
CspCI	CAANNNNNGTGG	2 cut(s)	780, 815
CviQI	GTAC	2 cut(s)	621, 849
DdeI	CTNAG	4 cut(s)	15, 252, 780, 897
DpnI	GATC	3 cut(s)	186, 406, 726
DpnII	GATC	3 cut(s)	184, 404, 724
Eam1104I	CTCTTC	2 cut(s)	14, 191
EarI	CTCTTC	2 cut(s)	14, 191
Ecl136II	GAGCTC	1 cut(s)	275
Eco24I	GRGCYC	2 cut(s)	277, 862
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	2 cut(s)	459, 855
EcoICRI	GAGCTC	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	984
EcoT38I	GRGCYC	2 cut(s)	277, 862
FaiI	YATR	5 cut(s)	174, 411, 495, 522, 797
Fnu4HI	GCNGC	4 cut(s)	30, 151, 923, 976
FokI	GGATG	2 cut(s)	398, 431
FriOI	GRGCYC	2 cut(s)	277, 862
Fsp4HI	GCNGC	4 cut(s)	30, 151, 923, 976
FspBI	CTAG	2 cut(s)	279, 813
GluI	GCNGC	4 cut(s)	30, 151, 923, 976
GsaI	CCCAGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	991
HaeIII	GGCC	2 cut(s)	225, 941
HapII	CCGG	3 cut(s)	264, 626, 938
HgaI	GACGC	1 cut(s)	774
Hin1I	GRCGYC	1 cut(s)	785
HinfI	GANTC	8 cut(s)	356, 455, 488, 545, 565, 803, 881, 901
HpaII	CCGG	3 cut(s)	264, 626, 938
HphI	GGTGA	2 cut(s)	152, 543
Hpy166II	GTNNAC	2 cut(s)	584, 623
Hpy188I	TCNGA	6 cut(s)	253, 300, 448, 508, 570, 916
Hpy188III	TCNNGA	6 cut(s)	164, 459, 813, 896, 905, 989
Hpy8I	GTNNAC	2 cut(s)	584, 623
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	4 cut(s)	262, 295, 475, 572
HpyCH4V	TGCA	5 cut(s)	153, 158, 398, 584, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 222, 395
HpyF3I	CTNAG	4 cut(s)	15, 252, 780, 897
Hsp92I	GRCGYC	1 cut(s)	785
Kzo9I	GATC	3 cut(s)	184, 404, 724
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	5 cut(s)	166, 208, 272, 280, 1010
Lsp1109I	GCAGC	4 cut(s)	16, 137, 934, 962
LweI	GCATC	3 cut(s)	178, 376, 865
MaeI	CTAG	2 cut(s)	279, 813
MaeIII	GTNAC	5 cut(s)	106, 610, 712, 762, 931
MalI	GATC	3 cut(s)	186, 406, 726
MboI	GATC	3 cut(s)	184, 404, 724
MboII	GAAGA	6 cut(s)	31, 208, 325, 540, 607, 780
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	2 cut(s)	184, 724
MhlI	GDGCHC	3 cut(s)	277, 586, 862
MluCI	AATT	6 cut(s)	333, 344, 540, 689, 741, 984
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	2 cut(s)	286, 651
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	2 cut(s)	192, 734
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	3 cut(s)	264, 626, 938
MspR9I	CCNGG	1 cut(s)	265
MunI	CAATTG	1 cut(s)	540
MwoI	GCNNNNNNNGC	3 cut(s)	217, 222, 395
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	184, 404, 724
NlaIV	GGNNCC	4 cut(s)	186, 726, 942, 1006
NmuCI	GTSAC	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	459
PciSI	GCTCTTC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	7 cut(s)	356, 488, 545, 565, 803, 881, 901
PfoI	TCCNGGA	1 cut(s)	263
PinAI	ACCGGT	1 cut(s)	625
PkrI	GCNGC	4 cut(s)	31, 152, 924, 977
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
Psp124BI	GAGCTC	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	211
PspN4I	GGNNCC	4 cut(s)	186, 726, 942, 1006
PspPI	GGNCC	2 cut(s)	224, 940
PstNI	CAGNNNCTG	1 cut(s)	928
PsuI	RGATCY	2 cut(s)	184, 724
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	2 cut(s)	622, 850
RsaNI	GTAC	2 cut(s)	621, 849
SacI	GAGCTC	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	192, 734
SatI	GCNGC	4 cut(s)	30, 151, 923, 976
Sau3AI	GATC	3 cut(s)	184, 404, 724
Sau96I	GGNCC	2 cut(s)	224, 940
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	3 cut(s)	277, 586, 862
SfaNI	GCATC	3 cut(s)	178, 376, 865
Sfr274I	CTCGAG	1 cut(s)	459
SlaI	CTCGAG	1 cut(s)	459
SmlI	CTYRAG	4 cut(s)	90, 430, 459, 861
SmoI	CTYRAG	4 cut(s)	90, 430, 459, 861
Sse9I	AATT	6 cut(s)	333, 344, 540, 689, 741, 984
SsiI	CCGC	1 cut(s)	360
SspI	AATATT	1 cut(s)	911
SspMI	CTAG	2 cut(s)	279, 813
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	263
TaqI	TCGA	1 cut(s)	460
TasI	AATT	6 cut(s)	333, 344, 540, 689, 741, 984
TatI	WGTACW	1 cut(s)	620
TfiI	GAWTC	7 cut(s)	356, 488, 545, 565, 803, 881, 901
Tru1I	TTAA	2 cut(s)	192, 734
Tru9I	TTAA	2 cut(s)	192, 734
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	4 cut(s)	29, 150, 922, 975
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	2 cut(s)	737, 750
TspRI	CASTG	1 cut(s)	160
VneI	GTGCAC	1 cut(s)	582
XapI	RAATTY	1 cut(s)	984
XbaI	TCTAGA	1 cut(s)	812
XhoI	CTCGAG	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	2 cut(s)	279, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.