RLG00000031962

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006128
Physical Location & Seq
Forward (+)
9845607 .. 9849161
3555 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031962

Sequence Viewer

Length: 1002 bp
ATGCCTTCAGGTGCCAAGAGGAGAAAGGCTGCCAAGAAAAAGAAGGAGAAGGAGAAGGAGAATCAGACCCAAAACGGGAGTTCATCAACCAGCAAAAGCAACCCTCAAGGAGACGCAAGTGATGGTGGTGAGGTTGGCTCTAAACCTCAAGCTAAAGAGTGGAGACCAGTCACTCGAGCTAAGTCCGTAGAGGGAGAATCTAGTGATGCAGAGGCTGTTCGGAAAGATGGTGGTGTTAGAATTGAGAGGGATTCCAAGGAGGGTTCCAAGAGCAACAAGCGTGCTGGGTCTGGAAAGGAATCAATTAAAGGCTCGAGTAGTAGCAGTAGCAGTGGTAGGAGTAGTTCAGATGATGAGTCTTGTGTTGTTGAAAGGAGAAGGAAGGAGAAGGGTGATGCTACCGTTTTGGAGGAAAAAAAACCTGCTAGTGATTTGGTTAAGTCGGTTGATTCTTTACTAGCAGAAGTGACTCACTCTACAAATGAGGCACCAGCTGAGAAGACTACAAGTTTAGTTGCAGATAAGGCCCCTTCGGCCGAGAAGACTGCAAGTTTAGTTGCAGAGAAGGCCCCTTCGCTTGATTCTGATAAGGCTGTGGTGACTGTTCACTTTACAGAAACTACTCCAGTTGACGGTCTAGTGATCTCTGGTACAGTTGTAAAACCGGCATTGGAGAGTGGTGCAGAGAAGTCTTCAGAAACTTTGACTGATTCACTACCAGAGAAAATCGAGAGTATAGTGTGTCCCCCGCTAATTGGGAATGGTAAGGCATCTCTGACTGTGGTGGAATCTGTATCTAAAGAAAATGGGAGTAAAGTATTGCCATCAGTAGGTGTGGTGGAATCTGTATCTAAAGAAAATGGGAGTAAAGTATTGCCATCAGTAGGTGTCTCTCCTGCTCAAACTAGTAATGATGCTGGATCCATTAAAGATTCCGAAATTCCAGAATATTCTGAAAGCCAGCCTCTAGCTCCAGGACATAACTTCAGGATCGAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

34.67

Weight (kDa)

6.12

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 430
AccB1I GGYRCC 2 cut(s) 11, 487
AciI CCGC 1 cut(s) 749
AclWI GGATC 3 cut(s) 915, 928, 998
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 1 cut(s) 939
AcuI CTGAAG 2 cut(s) 678, 970
AfaI GTAC 1 cut(s) 652
AfiI CCNNNNNNNGG 5 cut(s) 75, 632, 755, 830, 884
AgsI TTSAA 1 cut(s) 371
AhlI ACTAGT 1 cut(s) 905
AjnI CCWGG 1 cut(s) 973
AluBI AGCT 4 cut(s) 152, 179, 494, 971
AluI AGCT 4 cut(s) 152, 179, 494, 971
Alw26I GTCTC 3 cut(s) 105, 157, 895
AlwI GGATC 3 cut(s) 915, 928, 998
AlwNI CAGNNNCTG 1 cut(s) 215
Ama87I CYCGRG 2 cut(s) 174, 313
AoxI GGCC 3 cut(s) 525, 534, 567
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 939
AspS9I GGNCC 2 cut(s) 526, 568
AsuHPI GGTGA 3 cut(s) 140, 404, 610
AvaI CYCGRG 2 cut(s) 174, 313
BaeI ACNNNNGTAYC 2 cut(s) 642, 675
BamHI GGATCC 1 cut(s) 920
BanI GGYRCC 2 cut(s) 11, 487
BbsI GAAGAC 3 cut(s) 506, 548, 684
BbvI GCAGC 1 cut(s) 16
BccI CCATC 4 cut(s) 116, 221, 832, 886
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 1 cut(s) 975
BcoDI GTCTC 3 cut(s) 105, 157, 895
BcuI ACTAGT 1 cut(s) 905
BfaI CTAG 6 cut(s) 201, 426, 458, 638, 906, 968
BfuAI ACCTGC 1 cut(s) 430
BglI GCCNNNNNGGC 1 cut(s) 533
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 975
BmeT110I CYCGRG 2 cut(s) 174, 313
BmgT120I GGNCC 2 cut(s) 526, 568
BmiI GGNNCC 6 cut(s) 13, 265, 489, 528, 570, 922
BmrFI CCNGG 1 cut(s) 975
BmsI GCATC 4 cut(s) 196, 385, 779, 904
BpiI GAAGAC 3 cut(s) 506, 548, 684
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 2 cut(s) 609, 957
BpuEI CTTGAG 2 cut(s) 90, 132
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 5 cut(s) 75, 632, 755, 830, 884
Bse118I RCCGGY 1 cut(s) 664
Bse1I ACTGG 2 cut(s) 167, 626
BseBI CCWGG 1 cut(s) 975
BseDI CCNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 5 cut(s) 75, 632, 755, 830, 884
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 167, 626
BseRI GAGGAG 1 cut(s) 34
BseX3I CGGCCG 1 cut(s) 534
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 702
Bsh1285I CGRYCG 1 cut(s) 537
BshFI GGCC 3 cut(s) 527, 536, 569
BshNI GGYRCC 2 cut(s) 11, 487
BsiEI CGRYCG 1 cut(s) 537
BsiHKCI CYCGRG 2 cut(s) 174, 313
BsiSI CCGG 1 cut(s) 665
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 5 cut(s) 75, 632, 755, 830, 884
BsmAI GTCTC 3 cut(s) 105, 157, 895
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 729
BsnI GGCC 3 cut(s) 527, 536, 569
Bso31I GGTCTC 1 cut(s) 157
BsoBI CYCGRG 2 cut(s) 174, 313
Bsp143I GATC 3 cut(s) 642, 920, 990
BspACI CCGC 1 cut(s) 749
BspANI GGCC 3 cut(s) 527, 536, 569
BspCNI CTCAG 1 cut(s) 487
BspLI GGNNCC 6 cut(s) 13, 265, 489, 528, 570, 922
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 3 cut(s) 915, 928, 998
BspT107I GGYRCC 2 cut(s) 11, 487
BspTNI GGTCTC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 664
BsrI ACTGG 2 cut(s) 167, 626
BssAI RCCGGY 1 cut(s) 664
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 3 cut(s) 642, 920, 990
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 975
Bst4CI ACNGT 5 cut(s) 403, 604, 635, 655, 781
BstC8I GCNNGC 2 cut(s) 282, 962
BstDEI CTNAG 2 cut(s) 180, 495
BstKTI GATC 3 cut(s) 645, 923, 993
BstMAI GTCTC 3 cut(s) 105, 157, 895
BstMBI GATC 3 cut(s) 642, 920, 990
BstMCI CGRYCG 1 cut(s) 537
BstMWI GCNNNNNNNGC 3 cut(s) 524, 533, 566
BstNI CCWGG 1 cut(s) 975
BstSCI CCNGG 1 cut(s) 973
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 3 cut(s) 506, 548, 684
BstX2I RGATCY 1 cut(s) 920
BstYI RGATCY 1 cut(s) 920
BstZI CGGCCG 1 cut(s) 534
BsuRI GGCC 3 cut(s) 527, 536, 569
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 337
BveI ACCTGC 1 cut(s) 430
Cac8I GCNNGC 2 cut(s) 282, 962
CaiI CAGNNNCTG 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 664
Cfr13I GGNCC 2 cut(s) 526, 568
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 651
CviAII CATG 1 cut(s) 999
CviQI GTAC 1 cut(s) 651
DdeI CTNAG 2 cut(s) 180, 495
DpnI GATC 3 cut(s) 644, 922, 992
DpnII GATC 3 cut(s) 642, 920, 990
EaeI YGGCCR 1 cut(s) 534
EagI CGGCCG 1 cut(s) 534
EclXI CGGCCG 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 157
Eco52I CGGCCG 1 cut(s) 534
Eco57I CTGAAG 2 cut(s) 678, 970
Eco88I CYCGRG 2 cut(s) 174, 313
EcoO109I RGGNCCY 2 cut(s) 526, 568
EcoRII CCWGG 1 cut(s) 973
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 1 cut(s) 1002
FaiI YATR 3 cut(s) 737, 981, 1000
FaqI GGGAC 1 cut(s) 729
FatI CATG 1 cut(s) 998
FauI CCCGC 1 cut(s) 756
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 6 cut(s) 201, 426, 458, 638, 906, 968
GluI GCNGC 1 cut(s) 30
GsaI CCCAGC 1 cut(s) 288
GsuI CTGGAG 2 cut(s) 609, 957
HaeIII GGCC 3 cut(s) 527, 536, 569
HapII CCGG 1 cut(s) 665
HgaI GACGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 1002
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HpaII CCGG 1 cut(s) 665
HphI GGTGA 3 cut(s) 140, 404, 610
Hpy166II GTNNAC 2 cut(s) 607, 631
Hpy188I TCNGA 8 cut(s) 66, 222, 349, 586, 697, 777, 937, 955
Hpy188III TCNNGA 4 cut(s) 291, 730, 944, 988
Hpy8I GTNNAC 2 cut(s) 607, 631
HpyCH4III ACNGT 5 cut(s) 403, 604, 635, 655, 781
HpyCH4V TGCA 5 cut(s) 209, 518, 548, 560, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 524, 533, 566
HpyF3I CTNAG 2 cut(s) 180, 495
Hsp92II CATG 1 cut(s) 1002
Kzo9I GATC 3 cut(s) 642, 920, 990
LmnI GCTCC 1 cut(s) 976
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 4 cut(s) 196, 385, 779, 904
MaeI CTAG 6 cut(s) 201, 426, 458, 638, 906, 968
MaeIII GTNAC 3 cut(s) 169, 466, 598
MalI GATC 3 cut(s) 644, 922, 992
MboI GATC 3 cut(s) 642, 920, 990
MboII GAAGA 3 cut(s) 511, 553, 684
MflI RGATCY 1 cut(s) 920
MluCI AATT 4 cut(s) 240, 303, 753, 939
MlyI GAGTC 2 cut(s) 365, 463
MseI TTAA 3 cut(s) 306, 438, 927
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 1 cut(s) 665
MspR9I CCNGG 1 cut(s) 975
MvaI CCWGG 1 cut(s) 975
MwoI GCNNNNNNNGC 3 cut(s) 524, 533, 566
NdeII GATC 3 cut(s) 642, 920, 990
NlaIII CATG 1 cut(s) 1002
NlaIV GGNNCC 6 cut(s) 13, 265, 489, 528, 570, 922
NmeAIII GCCGAG 1 cut(s) 562
NmuCI GTSAC 3 cut(s) 169, 466, 598
PaeR7I CTCGAG 2 cut(s) 174, 313
PfoI TCCNGGA 1 cut(s) 973
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 2 cut(s) 364, 463
PpsI GAGTC 2 cut(s) 364, 463
Psp6I CCWGG 1 cut(s) 973
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 973
PspN4I GGNNCC 6 cut(s) 13, 265, 489, 528, 570, 922
PspPI GGNCC 2 cut(s) 526, 568
PspXI VCTCGAGB 2 cut(s) 174, 313
PsrI GAACNNNNNNTAC 2 cut(s) 328, 360
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 920
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 1 cut(s) 652
RsaNI GTAC 1 cut(s) 651
SaqAI TTAA 3 cut(s) 306, 438, 927
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 3 cut(s) 642, 920, 990
Sau96I GGNCC 2 cut(s) 526, 568
SchI GAGTC 2 cut(s) 365, 463
ScrFI CCNGG 1 cut(s) 975
SfaNI GCATC 4 cut(s) 196, 385, 779, 904
SfiI GGCCNNNNNGGCC 1 cut(s) 533
Sfr274I CTCGAG 2 cut(s) 174, 313
SlaI CTCGAG 2 cut(s) 174, 313
SmlI CTYRAG 4 cut(s) 105, 147, 174, 313
SmoI CTYRAG 4 cut(s) 105, 147, 174, 313
SpeI ACTAGT 1 cut(s) 905
Sse9I AATT 4 cut(s) 240, 303, 753, 939
SsiI CCGC 1 cut(s) 749
SspI AATATT 1 cut(s) 950
SspMI CTAG 6 cut(s) 201, 426, 458, 638, 906, 968
StyD4I CCNGG 1 cut(s) 973
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 5 cut(s) 403, 604, 635, 655, 781
TaqI TCGA 4 cut(s) 175, 314, 729, 993
TasI AATT 4 cut(s) 240, 303, 753, 939
Tru1I TTAA 3 cut(s) 306, 438, 927
Tru9I TTAA 3 cut(s) 306, 438, 927
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 3 cut(s) 169, 466, 598
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 3 cut(s) 169, 466, 598
TspDTI ATGAA 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 337
XapI RAATTY 1 cut(s) 939
XhoI CTCGAG 2 cut(s) 174, 313
XspI CTAG 6 cut(s) 201, 426, 458, 638, 906, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.