Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006128

Physical Location & Seq

Genomic Coordinates Forward (+)

8714635 .. 8719049

Gene Structure 4415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29341

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCCGTCAGGTGCCAAGAGGAGAAAGGCTGCCAAGAAAAAGAAGGAGAAGGAGAATCAGACCCAAAACGGGAGTTCATCAACCACCAAAAGCAACCCTCAAGGAGACGTAAGTGATGGTGGTGAGGTTGGCTCTAAACCTCAAGCTAAAGAGTGGAGACCAGTCACTCGGGCTAAGTCCGTAGAGGGAGAATCTAGTGATGCTGAGGCTGTTCGGAAAGATGGTGGTGTTGGAATTGAGAGGGATTCGAAGGAGGGTTCCAAGAGCAACAAGCGTGCTGGGTCTGGAAAGGAATCAATTAAAGGCTCCAGTAGTAGCAGTAGCAGTGGTAGGAGTAGTTCAGATGACGAGTCTCGTGTCGTTGAAAGGAGAAGGAAGGAGAAGGGTGGTGCTACCGTTTCGGAGGAAAAAAAACCTGCTAGTGATTTGGTTAAGTCGGTTGATTCTTTACTAGCAGAAGTGACTCACTCTACTAATGAGGCACCAGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTTGGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTCGGCTGAGAAGACTGCAAGTTTAGTTGCAGAGAAGGCCCCTTCGCTTGATTCTGATAAGCCTGTGGTGACTGTTCACTTTACAGAAACTACTCCAGTTGACGGTCTTGTGATCTCTGGTACAGTTGTAAAACCGGCATTGGAGAGTGGTGCAGAGAAGTCTTTAGAAACTTTGACTGATTCGCTACCAGAGAAAATTGAGAGTATAGTGTGTCCCCCGCTAATTGAGAATGGTAAGGCATCTCCGACTGTGGTGGAATCTGTATCTAAAGAAAATGGGAGTAAAGTATTGCCATCAGTAGGTGTGGTGGAATCTGTATCTAAAGAAAACGGGAGTAAAATATTGCCATCAGTAGGTGTCTCTCCCGCTCAAACTAGTAATGATGCTGGATCCATTAAAGATTCTGAAATTCCAGAATATTCTGAAAGCCAGCCTCTAGTAGCTCCTGCCCCACGAGTGGTGGAAAAAACTTCTTGCTTTGGTTGCTGCGGAATTCTGGACGTGATAACAGGCTCCAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

37.73

Weight (kDa)

6.81

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29530 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310
fragaria_vesca	FvH4_3g06440 FvH4_3g06440
malus_domestica	MD05G1292200.v1.1 MD10G1268000.v1.1
prunus_persica	Prupe.4G073200_v2.0.a1
pyrus_communis	pycom10g22430
rosa_chinensis	RchiOBHm_Chr5g0012861
rosa_laevigata	RLG00000031962
rosa_multiflora	Rmu_sc0002365.1_g000030 Rmu_sc0010496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063740
rosa_rugosa	Rorug05G0004700 Rorug05G0004700 Rorug05G0004800.1
rosa_samantha	Rh5AG098700 Rh5BG095400 Rh5CG107600 Rh5DG094200
rosa_wichuraiana	Rw5G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AccB1I	GGYRCC	2 cut(s)	11, 481
AccBSI	CCGCTC	1 cut(s)	935
AciI	CCGC	3 cut(s)	785, 933, 1056
AclWI	GGATC	2 cut(s)	951, 964
AcsI	RAATTY	2 cut(s)	975, 1059
AfaI	GTAC	1 cut(s)	688
AfiI	CCNNNNNNNGG	5 cut(s)	69, 668, 866, 920, 1024
AgsI	TTSAA	1 cut(s)	365
AhlI	ACTAGT	1 cut(s)	941
AjiI	CACGTC	1 cut(s)	1069
AjnI	CCWGG	1 cut(s)	1082
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AluBI	AGCT	3 cut(s)	146, 488, 1010
AluI	AGCT	3 cut(s)	146, 488, 1010
Alw26I	GTCTC	4 cut(s)	99, 151, 357, 931
AlwI	GGATC	2 cut(s)	951, 964
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	3 cut(s)	519, 561, 603
ApeKI	GCWGC	2 cut(s)	29, 1053
ApoI	RAATTY	2 cut(s)	975, 1059
AspS9I	GGNCC	3 cut(s)	520, 562, 604
AsuHPI	GGTGA	2 cut(s)	134, 646
AsuII	TTCGAA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	168
BaeI	ACNNNNGTAYC	2 cut(s)	678, 711
BamHI	GGATCC	1 cut(s)	956
BanI	GGYRCC	2 cut(s)	11, 481
BauI	CACGAG	2 cut(s)	354, 1020
BbsI	GAAGAC	3 cut(s)	500, 542, 584
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	16, 1040
BccI	CCATC	4 cut(s)	110, 215, 868, 922
BciT130I	CCWGG	1 cut(s)	1084
BcoDI	GTCTC	4 cut(s)	99, 151, 357, 931
BcuI	ACTAGT	1 cut(s)	941
BfaI	CTAG	5 cut(s)	195, 420, 452, 942, 1004
BfuAI	ACCTGC	1 cut(s)	424
BglI	GCCNNNNNGGC	2 cut(s)	527, 569
BisI	GCNGC	2 cut(s)	30, 1054
BlsI	GCNGC	2 cut(s)	31, 1055
Bme1390I	CCNGG	1 cut(s)	1084
BmeT110I	CYCGRG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	1069
BmgT120I	GGNCC	3 cut(s)	520, 562, 604
BmiI	GGNNCC	9 cut(s)	13, 259, 307, 483, 522, 564, 606, 958, 1081
BmrFI	CCNGG	1 cut(s)	1084
BmsI	GCATC	3 cut(s)	190, 815, 940
BpiI	GAAGAC	3 cut(s)	500, 542, 584
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	3 cut(s)	292, 645, 1066
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	84, 126
BsaI	GGTCTC	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 668, 866, 920, 1024
Bse118I	RCCGGY	1 cut(s)	700
Bse1I	ACTGG	3 cut(s)	161, 309, 662
BseBI	CCWGG	1 cut(s)	1084
BseLI	CCNNNNNNNGG	5 cut(s)	69, 668, 866, 920, 1024
BseMII	CTCAG	4 cut(s)	195, 480, 522, 564
BseNI	ACTGG	3 cut(s)	161, 309, 662
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	16, 1040
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	738
BshFI	GGCC	3 cut(s)	521, 563, 605
BshNI	GGYRCC	2 cut(s)	11, 481
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	701
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	5 cut(s)	69, 668, 866, 920, 1024
BsmAI	GTCTC	4 cut(s)	99, 151, 357, 931
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	765
BsnI	GGCC	3 cut(s)	521, 563, 605
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	678, 956
BspACI	CCGC	3 cut(s)	785, 933, 1056
BspANI	GGCC	3 cut(s)	521, 563, 605
BspCNI	CTCAG	4 cut(s)	196, 481, 523, 565
BspLI	GGNNCC	9 cut(s)	13, 259, 307, 483, 522, 564, 606, 958, 1081
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	951, 964
BspT104I	TTCGAA	1 cut(s)	248
BspT107I	GGYRCC	2 cut(s)	11, 481
BspTNI	GGTCTC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	935
BsrFI	RCCGGY	1 cut(s)	700
BsrI	ACTGG	3 cut(s)	161, 309, 662
BssAI	RCCGGY	1 cut(s)	700
BssMI	GATC	2 cut(s)	678, 956
BssSI	CACGAG	2 cut(s)	354, 1020
Bst2BI	CACGAG	2 cut(s)	354, 1020
Bst2UI	CCWGG	1 cut(s)	1084
Bst4CI	ACNGT	5 cut(s)	397, 640, 671, 691, 817
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	276, 998
BstDEI	CTNAG	5 cut(s)	174, 204, 489, 531, 573
BstKTI	GATC	2 cut(s)	681, 959
BstMAI	GTCTC	4 cut(s)	99, 151, 357, 931
BstMBI	GATC	2 cut(s)	678, 956
BstMWI	GCNNNNNNNGC	6 cut(s)	518, 527, 560, 569, 602, 1050
BstNI	CCWGG	1 cut(s)	1084
BstSCI	CCNGG	1 cut(s)	1082
BstV1I	GCAGC	2 cut(s)	16, 1040
BstV2I	GAAGAC	3 cut(s)	500, 542, 584
BstX2I	RGATCY	1 cut(s)	956
BstYI	RGATCY	1 cut(s)	956
BsuRI	GGCC	3 cut(s)	521, 563, 605
BtrI	CACGTC	1 cut(s)	1069
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	331
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	276, 998
Cfr10I	RCCGGY	1 cut(s)	700
Cfr13I	GGNCC	3 cut(s)	520, 562, 604
Csp6I	GTAC	1 cut(s)	687
CviQI	GTAC	1 cut(s)	687
DdeI	CTNAG	5 cut(s)	174, 204, 489, 531, 573
DpnI	GATC	2 cut(s)	680, 958
DpnII	GATC	2 cut(s)	678, 956
Eco31I	GGTCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	168
EcoO109I	RGGNCCY	3 cut(s)	520, 562, 604
EcoRI	GAATTC	1 cut(s)	1059
EcoRII	CCWGG	1 cut(s)	1082
Esp3I	CGTCTC	1 cut(s)	99
FaiI	YATR	1 cut(s)	773
FaqI	GGGAC	1 cut(s)	765
FauI	CCCGC	2 cut(s)	792, 940
Fnu4HI	GCNGC	2 cut(s)	30, 1054
Fsp4HI	GCNGC	2 cut(s)	30, 1054
FspBI	CTAG	5 cut(s)	195, 420, 452, 942, 1004
GluI	GCNGC	2 cut(s)	30, 1054
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	3 cut(s)	292, 645, 1066
HaeIII	GGCC	3 cut(s)	521, 563, 605
HapII	CCGG	1 cut(s)	701
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	2 cut(s)	134, 646
Hpy166II	GTNNAC	2 cut(s)	643, 667
Hpy188I	TCNGA	8 cut(s)	60, 216, 343, 403, 622, 813, 973, 991
Hpy188III	TCNNGA	3 cut(s)	285, 980, 1064
Hpy8I	GTNNAC	2 cut(s)	643, 667
HpyCH4III	ACNGT	5 cut(s)	397, 640, 671, 691, 817
HpyCH4IV	ACGT	2 cut(s)	108, 1068
HpyCH4V	TGCA	5 cut(s)	512, 554, 584, 596, 719
HpyF10VI	GCNNNNNNNGC	6 cut(s)	518, 527, 560, 569, 602, 1050
HpyF3I	CTNAG	5 cut(s)	174, 204, 489, 531, 573
HpySE526I	ACGT	2 cut(s)	108, 1068
Kzo9I	GATC	2 cut(s)	678, 956
LmnI	GCTCC	3 cut(s)	311, 1015, 1085
Lsp1109I	GCAGC	2 cut(s)	16, 1040
LweI	GCATC	3 cut(s)	190, 815, 940
MaeI	CTAG	5 cut(s)	195, 420, 452, 942, 1004
MaeII	ACGT	2 cut(s)	108, 1068
MaeIII	GTNAC	3 cut(s)	163, 460, 634
MalI	GATC	2 cut(s)	680, 958
MbiI	CCGCTC	1 cut(s)	935
MboI	GATC	2 cut(s)	678, 956
MboII	GAAGA	3 cut(s)	505, 547, 589
MflI	RGATCY	1 cut(s)	956
MluCI	AATT	6 cut(s)	234, 297, 762, 789, 975, 1059
MlyI	GAGTC	2 cut(s)	359, 457
MmeI	TCCRAC	2 cut(s)	211, 836
MseI	TTAA	3 cut(s)	300, 432, 963
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	1 cut(s)	1084
MvaI	CCWGG	1 cut(s)	1084
MwoI	GCNNNNNNNGC	6 cut(s)	518, 527, 560, 569, 602, 1050
NdeII	GATC	2 cut(s)	678, 956
NlaIV	GGNNCC	9 cut(s)	13, 259, 307, 483, 522, 564, 606, 958, 1081
NmuCI	GTSAC	3 cut(s)	163, 460, 634
NspV	TTCGAA	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	1082
PkrI	GCNGC	2 cut(s)	31, 1055
PleI	GAGTC	2 cut(s)	358, 457
PpsI	GAGTC	2 cut(s)	358, 457
Psp6I	CCWGG	1 cut(s)	1082
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	1082
PspN4I	GGNNCC	9 cut(s)	13, 259, 307, 483, 522, 564, 606, 958, 1081
PspPI	GGNCC	3 cut(s)	520, 562, 604
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PsuI	RGATCY	1 cut(s)	956
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	688
RsaNI	GTAC	1 cut(s)	687
SaqAI	TTAA	3 cut(s)	300, 432, 963
SatI	GCNGC	2 cut(s)	30, 1054
Sau3AI	GATC	2 cut(s)	678, 956
Sau96I	GGNCC	3 cut(s)	520, 562, 604
SchI	GAGTC	2 cut(s)	359, 457
ScrFI	CCNGG	1 cut(s)	1084
SfaNI	GCATC	3 cut(s)	190, 815, 940
SfuI	TTCGAA	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	99, 141
SmoI	CTYRAG	2 cut(s)	99, 141
SpeI	ACTAGT	1 cut(s)	941
Sse9I	AATT	6 cut(s)	234, 297, 762, 789, 975, 1059
SsiI	CCGC	3 cut(s)	785, 933, 1056
SspI	AATATT	2 cut(s)	909, 986
SspMI	CTAG	5 cut(s)	195, 420, 452, 942, 1004
StyD4I	CCNGG	1 cut(s)	1082
TaaI	ACNGT	5 cut(s)	397, 640, 671, 691, 817
TaiI	ACGT	2 cut(s)	111, 1071
TaqI	TCGA	1 cut(s)	248
TasI	AATT	6 cut(s)	234, 297, 762, 789, 975, 1059
Tru1I	TTAA	3 cut(s)	300, 432, 963
Tru9I	TTAA	3 cut(s)	300, 432, 963
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	3 cut(s)	163, 460, 634
TseI	GCWGC	2 cut(s)	29, 1053
Tsp45I	GTSAC	3 cut(s)	163, 460, 634
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	975, 1059
XspI	CTAG	5 cut(s)	195, 420, 452, 942, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.