Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0006128

Physical Location & Seq

Genomic Coordinates Reverse (-)

85514242 .. 85518688

Gene Structure 4447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCCGTCAGGTGCCAAGAGGAGAAAGGCTGCCAAGAAAAAGAAGGAGAAGGAGAATCAGACCCAAAACGGGAGTTCATCAACCAGCAAAAGCAACCCTCAAGGAGACGTAAGTGATAGTGGTGAGGTTGGCTCTAAACCTCAAGCTAAAGAGTGGAGACCAGTCACTCGAGCCAAGTCCGTAGAGGGAGAATCTAGTGATGCTGAGGCTGTTCGGAAAGATGGTGGTTTTAGAATTGAGAGGGATTCGAAGGAGGGTTCCAAGAGCAACAAGCGTGCTGGGTCTGGAAAGGAATCAATTAAAGGCTCGAGTAGTAGCAGTAGCAGTGGTAGGAGTAGTTCAGATGACGAGTCTCGTGTTGTTGAAAGGAGAAGGAAGGAGAAGGAAGTGACTCACTCTACTAATGAGGCACCAGCTGAGAAGACTACAAATTTAGTTGCAGAGAAGGCCCCTTTGGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTCGGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCTTTCGGCTGAGAAGACTACAAGTTTAGTTTCAGAGAAGGCCCCTTCGGCTGAGAAGACTACCAGTTTAGTTTCAGAGAAGGCCCCTTCGGCTGAGAAGACTCCAAGTTTAGTTTCAGAGAAGGCCCCTTCGGCTGAGAAGACTCCAAGTTTAGTTGCAGAGAAGGCCCCTTCGGCTGAGAAGACTCCAAGTTTAGTTGCAGAAAAGGCCCCTTTGGCTGAGAAGACTGCAAGTTTAGTTGCAGAGAAGGCCCCTTCGCTTGATTCTGATAAGCCTGTGGTGACTGTTCACTTTACAGAAACTACTCCAGTTGATGGTCTAGTGATCTCTGGTACAGTTGTAAAACCGGCGTTGGAGAGTGGTGCTGAGAAGTCTTTAGAAACTTTGACTGATTCGCTACCAGAGAAAATCGAGAGTATAGTGTGTCCCCCACTAATTGAGAATGGTAAGGCATCTCCGACTGTGGTGGAATTTGTATCTAAAGAAAATGGGAGTAAAGTATTGCCATCAGTAGGTGTGGTGGAATCTGTATCTAAAGAAAATGGGAGTAAAATATTGCCATCAGTAGGTGTCTCTCCCGCTCAAACTAGTAATGATGCTGGATCCATTAAAGATTCTGAAATTCCAGAATATTCTGAAAGCCAGCCTCTAGTAGCTCCTGCCCCACGAGTGGTGGAAAAAACTTCTTGCTTTGGTTGCTGCGGAATTCTGGACGTGATAACAGGCTCCAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

423

Amino Acids

44.15

Weight (kDa)

8.12

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29530 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310
fragaria_vesca	FvH4_3g06440 FvH4_3g06440
malus_domestica	MD05G1292200.v1.1 MD10G1268000.v1.1
prunus_persica	Prupe.4G073200_v2.0.a1
pyrus_communis	pycom10g22430
rosa_chinensis	RchiOBHm_Chr5g0012861
rosa_laevigata	RLG00000031962
rosa_multiflora	Rmu_sc0002365.1_g000030 Rmu_sc0010496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063740
rosa_rugosa	Rorug05G0004700 Rorug05G0004700 Rorug05G0004800.1
rosa_samantha	Rh5AG098700 Rh5BG095400 Rh5CG107600 Rh5DG094200
rosa_wichuraiana	Rw5G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	11, 409
AccB7I	CCANNNNNTGG	1 cut(s)	848
AccBSI	CCGCTC	1 cut(s)	1115
AciI	CCGC	2 cut(s)	1113, 1236
AclWI	GGATC	2 cut(s)	1131, 1144
AcsI	RAATTY	4 cut(s)	430, 1004, 1155, 1239
AfaI	GTAC	1 cut(s)	868
AfiI	CCNNNNNNNGG	5 cut(s)	69, 848, 1046, 1100, 1204
AgsI	TTSAA	1 cut(s)	365
AhlI	ACTAGT	1 cut(s)	1121
AjiI	CACGTC	1 cut(s)	1249
AjnI	CCWGG	1 cut(s)	1262
AjuI	GAANNNNNNNTTGG	4 cut(s)	437, 469, 631, 663
AluBI	AGCT	3 cut(s)	146, 416, 1190
AluI	AGCT	3 cut(s)	146, 416, 1190
Alw26I	GTCTC	4 cut(s)	99, 151, 357, 1111
AlwI	GGATC	2 cut(s)	1131, 1144
Ama87I	CYCGRG	2 cut(s)	168, 307
AoxI	GGCC	9 cut(s)	447, 489, 531, 573, 615, 657, 699, 741, 783
ApeKI	GCWGC	2 cut(s)	29, 1233
ApoI	RAATTY	4 cut(s)	430, 1004, 1155, 1239
AspS9I	GGNCC	9 cut(s)	448, 490, 532, 574, 616, 658, 700, 742, 784
AsuHPI	GGTGA	2 cut(s)	134, 826
AsuII	TTCGAA	1 cut(s)	248
AvaI	CYCGRG	2 cut(s)	168, 307
BaeI	ACNNNNGTAYC	2 cut(s)	858, 891
BamHI	GGATCC	1 cut(s)	1136
BanI	GGYRCC	2 cut(s)	11, 409
BauI	CACGAG	2 cut(s)	354, 1200
BbsI	GAAGAC	9 cut(s)	428, 470, 512, 554, 596, 638, 680, 722, 764
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	16, 1220
BccI	CCATC	4 cut(s)	215, 842, 1048, 1102
BciT130I	CCWGG	1 cut(s)	1264
BcoDI	GTCTC	4 cut(s)	99, 151, 357, 1111
BcuI	ACTAGT	1 cut(s)	1121
BfaI	CTAG	4 cut(s)	195, 854, 1122, 1184
BglI	GCCNNNNNGGC	8 cut(s)	455, 497, 539, 581, 623, 665, 707, 749
BisI	GCNGC	2 cut(s)	30, 1234
BlsI	GCNGC	2 cut(s)	31, 1235
Bme1390I	CCNGG	1 cut(s)	1264
BmeT110I	CYCGRG	2 cut(s)	168, 307
BmgBI	CACGTC	1 cut(s)	1249
BmgT120I	GGNCC	9 cut(s)	448, 490, 532, 574, 616, 658, 700, 742, 784
BmrFI	CCNGG	1 cut(s)	1264
BmsI	GCATC	3 cut(s)	190, 995, 1120
BpiI	GAAGAC	9 cut(s)	428, 470, 512, 554, 596, 638, 680, 722, 764
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	2 cut(s)	825, 1246
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	2 cut(s)	84, 126
BsaI	GGTCTC	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 848, 1046, 1100, 1204
Bse118I	RCCGGY	1 cut(s)	880
Bse1I	ACTGG	3 cut(s)	161, 597, 842
BseBI	CCWGG	1 cut(s)	1264
BseLI	CCNNNNNNNGG	5 cut(s)	69, 848, 1046, 1100, 1204
BseNI	ACTGG	3 cut(s)	161, 597, 842
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	16, 1220
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	9 cut(s)	449, 491, 533, 575, 617, 659, 701, 743, 785
BshNI	GGYRCC	2 cut(s)	11, 409
BsiHKCI	CYCGRG	2 cut(s)	168, 307
BsiSI	CCGG	1 cut(s)	881
BslFI	GGGAC	1 cut(s)	945
BslI	CCNNNNNNNGG	5 cut(s)	69, 848, 1046, 1100, 1204
BsmAI	GTCTC	4 cut(s)	99, 151, 357, 1111
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	945
BsnI	GGCC	9 cut(s)	449, 491, 533, 575, 617, 659, 701, 743, 785
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	2 cut(s)	168, 307
Bsp119I	TTCGAA	1 cut(s)	248
Bsp143I	GATC	2 cut(s)	858, 1136
BspACI	CCGC	2 cut(s)	1113, 1236
BspANI	GGCC	9 cut(s)	449, 491, 533, 575, 617, 659, 701, 743, 785
BspPI	GGATC	2 cut(s)	1131, 1144
BspT104I	TTCGAA	1 cut(s)	248
BspT107I	GGYRCC	2 cut(s)	11, 409
BspTNI	GGTCTC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	1115
BsrFI	RCCGGY	1 cut(s)	880
BsrI	ACTGG	3 cut(s)	161, 597, 842
BssAI	RCCGGY	1 cut(s)	880
BssMI	GATC	2 cut(s)	858, 1136
BssSI	CACGAG	2 cut(s)	354, 1200
Bst2BI	CACGAG	2 cut(s)	354, 1200
Bst2UI	CCWGG	1 cut(s)	1264
Bst4CI	ACNGT	3 cut(s)	820, 871, 997
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	276, 1178
BstKTI	GATC	2 cut(s)	861, 1139
BstMAI	GTCTC	4 cut(s)	99, 151, 357, 1111
BstMBI	GATC	2 cut(s)	858, 1136
BstNI	CCWGG	1 cut(s)	1264
BstSCI	CCNGG	1 cut(s)	1262
BstV1I	GCAGC	2 cut(s)	16, 1220
BstV2I	GAAGAC	9 cut(s)	428, 470, 512, 554, 596, 638, 680, 722, 764
BstX2I	RGATCY	1 cut(s)	1136
BstYI	RGATCY	1 cut(s)	1136
BsuRI	GGCC	9 cut(s)	449, 491, 533, 575, 617, 659, 701, 743, 785
BtrI	CACGTC	1 cut(s)	1249
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	276, 1178
Cfr10I	RCCGGY	1 cut(s)	880
Cfr13I	GGNCC	9 cut(s)	448, 490, 532, 574, 616, 658, 700, 742, 784
Csp6I	GTAC	1 cut(s)	867
CviQI	GTAC	1 cut(s)	867
DpnI	GATC	2 cut(s)	860, 1138
DpnII	GATC	2 cut(s)	858, 1136
Eco31I	GGTCTC	1 cut(s)	151
Eco88I	CYCGRG	2 cut(s)	168, 307
EcoO109I	RGGNCCY	9 cut(s)	448, 490, 532, 574, 616, 658, 700, 742, 784
EcoRI	GAATTC	1 cut(s)	1239
EcoRII	CCWGG	1 cut(s)	1262
Esp3I	CGTCTC	1 cut(s)	99
FaiI	YATR	1 cut(s)	953
FaqI	GGGAC	1 cut(s)	945
FauI	CCCGC	1 cut(s)	1120
Fnu4HI	GCNGC	2 cut(s)	30, 1234
Fsp4HI	GCNGC	2 cut(s)	30, 1234
FspBI	CTAG	4 cut(s)	195, 854, 1122, 1184
GluI	GCNGC	2 cut(s)	30, 1234
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	825, 1246
HaeIII	GGCC	9 cut(s)	449, 491, 533, 575, 617, 659, 701, 743, 785
HapII	CCGG	1 cut(s)	881
HpaII	CCGG	1 cut(s)	881
HphI	GGTGA	2 cut(s)	134, 826
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188III	TCNNGA	4 cut(s)	285, 946, 1160, 1244
Hpy8I	GTNNAC	1 cut(s)	823
HpyCH4III	ACNGT	3 cut(s)	820, 871, 997
HpyCH4IV	ACGT	2 cut(s)	108, 1248
HpyCH4V	TGCA	7 cut(s)	440, 482, 524, 692, 734, 764, 776
HpySE526I	ACGT	2 cut(s)	108, 1248
Kzo9I	GATC	2 cut(s)	858, 1136
LmnI	GCTCC	2 cut(s)	1195, 1265
Lsp1109I	GCAGC	2 cut(s)	16, 1220
LweI	GCATC	3 cut(s)	190, 995, 1120
MaeI	CTAG	4 cut(s)	195, 854, 1122, 1184
MaeII	ACGT	2 cut(s)	108, 1248
MaeIII	GTNAC	3 cut(s)	163, 388, 814
MalI	GATC	2 cut(s)	860, 1138
MbiI	CCGCTC	1 cut(s)	1115
MboI	GATC	2 cut(s)	858, 1136
MboII	GAAGA	9 cut(s)	433, 475, 517, 559, 601, 643, 685, 727, 769
MflI	RGATCY	1 cut(s)	1136
MluCI	AATT	7 cut(s)	234, 297, 430, 969, 1004, 1155, 1239
MlyI	GAGTC	5 cut(s)	359, 385, 628, 670, 712
MmeI	TCCRAC	2 cut(s)	867, 1016
MseI	TTAA	2 cut(s)	300, 1143
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	1 cut(s)	881
MspR9I	CCNGG	1 cut(s)	1264
MvaI	CCWGG	1 cut(s)	1264
NdeII	GATC	2 cut(s)	858, 1136
NmuCI	GTSAC	3 cut(s)	163, 388, 814
NspV	TTCGAA	1 cut(s)	248
PaeR7I	CTCGAG	2 cut(s)	168, 307
PfeI	GAWTC	8 cut(s)	55, 191, 245, 293, 797, 926, 1058, 1148
PflMI	CCANNNNNTGG	1 cut(s)	848
PfoI	TCCNGGA	1 cut(s)	1262
PkrI	GCNGC	2 cut(s)	31, 1235
PleI	GAGTC	5 cut(s)	358, 385, 628, 670, 712
PpsI	GAGTC	5 cut(s)	358, 385, 628, 670, 712
Psp6I	CCWGG	1 cut(s)	1262
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	1262
PspPI	GGNCC	9 cut(s)	448, 490, 532, 574, 616, 658, 700, 742, 784
PspXI	VCTCGAGB	2 cut(s)	168, 307
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PsuI	RGATCY	1 cut(s)	1136
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	868
RsaNI	GTAC	1 cut(s)	867
SaqAI	TTAA	2 cut(s)	300, 1143
SatI	GCNGC	2 cut(s)	30, 1234
Sau3AI	GATC	2 cut(s)	858, 1136
Sau96I	GGNCC	9 cut(s)	448, 490, 532, 574, 616, 658, 700, 742, 784
SchI	GAGTC	5 cut(s)	359, 385, 628, 670, 712
ScrFI	CCNGG	1 cut(s)	1264
SfaNI	GCATC	3 cut(s)	190, 995, 1120
Sfr274I	CTCGAG	2 cut(s)	168, 307
SfuI	TTCGAA	1 cut(s)	248
SlaI	CTCGAG	2 cut(s)	168, 307
SmlI	CTYRAG	4 cut(s)	99, 141, 168, 307
SmoI	CTYRAG	4 cut(s)	99, 141, 168, 307
SpeI	ACTAGT	1 cut(s)	1121
Sse9I	AATT	7 cut(s)	234, 297, 430, 969, 1004, 1155, 1239
SsiI	CCGC	2 cut(s)	1113, 1236
SspI	AATATT	2 cut(s)	1089, 1166
SspMI	CTAG	4 cut(s)	195, 854, 1122, 1184
StyD4I	CCNGG	1 cut(s)	1262
TaaI	ACNGT	3 cut(s)	820, 871, 997
TaiI	ACGT	2 cut(s)	111, 1251
TaqI	TCGA	4 cut(s)	169, 248, 308, 945
TasI	AATT	7 cut(s)	234, 297, 430, 969, 1004, 1155, 1239
TfiI	GAWTC	8 cut(s)	55, 191, 245, 293, 797, 926, 1058, 1148
Tru1I	TTAA	2 cut(s)	300, 1143
Tru9I	TTAA	2 cut(s)	300, 1143
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	3 cut(s)	163, 388, 814
TseI	GCWGC	2 cut(s)	29, 1233
Tsp45I	GTSAC	3 cut(s)	163, 388, 814
TspDTI	ATGAA	1 cut(s)	66
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	848
XapI	RAATTY	4 cut(s)	430, 1004, 1155, 1239
XhoI	CTCGAG	2 cut(s)	168, 307
XspI	CTAG	4 cut(s)	195, 854, 1122, 1184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.