Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006128

Physical Location & Seq

Genomic Coordinates Reverse (-)

42356697 .. 42360021

Gene Structure 3325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1292200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCCATCAGGTGCCAAGAAGCGAAAAGCTGCCAAGAAAAAGAAGGAGCAGGAAACCCACAACGGCACATCCAATCCTCCTCCTCCTCAAGGAAGTAATGATGTGAACTCCCAAGATAACGGAGTGCCTAGGGATGAGGGGGCTGTTCATAAAGTTGGAATTGAGAGGGAACTGAAAGACGATTCTGGGAGCAAAGATGTGGTTATTGAGGATGCTAAGTCTGGAAAGGGATCATCTAACGGGGACGTTAGAAGCTCTAGCAGTAGTAGTTCAGATGAAGAGTCTCGGGTTGTCAATAGAAGGCGAAAGGAGGATACCTATGCTTCAGTTCCGGAGGAAAAAATTCATAATGAAGATGTACCAGCTGGGAAGACTACAAGTTCAGCTACTACAGAGAGTGTCCCTTCTGTTGATTCTGTTAAGCATGAGGTTTCTGTCACAGAAAGTACGCTAGATGAAAGTGCAGCGATCTCCAATGATGTAGTAAATGCGGGGTTAGAGAATGGTACAGAGACATCACTGCCTATTGGGGATCCTGTATCAAAGAAAACTAAGGATAAATCATTGCCATTACTGAATGATACTGCCAAGGCATCTTCGAGTGTGGTGGAATCTGCGTCTAAAGAAAATGAGAGTAAAGCATTGCCATCATTAGGTACTTCTCTGGCCCAAGTTAGTAATGATGCTGAACCCATCAAGGATACTGAGGTTCCAGAATATTCTGAAAAGCAGCCTCTAGTAGCTCCGGCCCCACCCATGGGGCAAAAAGCATCTTGGCTTAGCTGCTGTGGAATTCTGGATGTGATAACAGGCTCCGGAACAACGGATGAAGCGGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

29.32

Weight (kDa)

4.91

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29530 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310
fragaria_vesca	FvH4_3g06440 FvH4_3g06440
malus_domestica	MD05G1292200.v1.1 MD10G1268000.v1.1
prunus_persica	Prupe.4G073200_v2.0.a1
pyrus_communis	pycom10g22430
rosa_chinensis	RchiOBHm_Chr5g0012861
rosa_laevigata	RLG00000031962
rosa_multiflora	Rmu_sc0002365.1_g000030 Rmu_sc0010496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063740
rosa_rugosa	Rorug05G0004700 Rorug05G0004700 Rorug05G0004800.1
rosa_samantha	Rh5AG098700 Rh5BG095400 Rh5CG107600 Rh5DG094200
rosa_wichuraiana	Rw5G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccIII	TCCGGA	2 cut(s)	331, 815
AciI	CCGC	2 cut(s)	491, 833
AclWI	GGATC	3 cut(s)	238, 527, 540
AcsI	RAATTY	2 cut(s)	342, 792
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	4 cut(s)	360, 448, 508, 658
AfiI	CCNNNNNNNGG	4 cut(s)	89, 653, 757, 758
AluBI	AGCT	6 cut(s)	29, 255, 365, 386, 743, 783
AluI	AGCT	6 cut(s)	29, 255, 365, 386, 743, 783
Alw26I	GTCTC	2 cut(s)	288, 506
AlwI	GGATC	3 cut(s)	238, 527, 540
Ama87I	CYCGRG	1 cut(s)	285
Aor13HI	TCCGGA	2 cut(s)	331, 815
AoxI	GGCC	2 cut(s)	666, 747
ApeKI	GCWGC	4 cut(s)	29, 464, 730, 783
ApoI	RAATTY	2 cut(s)	342, 792
Asp700I	GAANNNNTTC	1 cut(s)	342
AspA2I	CCTAGG	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	667, 748
AvaI	CYCGRG	1 cut(s)	285
AvrII	CCTAGG	1 cut(s)	128
BaeI	ACNNNNGTAYC	2 cut(s)	693, 726
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	4 cut(s)	16, 476, 742, 770
BccI	CCATC	3 cut(s)	13, 655, 701
BceAI	ACGGC	1 cut(s)	79
BciVI	GTATCC	2 cut(s)	307, 694
BcoDI	GTCTC	2 cut(s)	288, 506
BfaI	CTAG	4 cut(s)	129, 258, 452, 737
BfmI	CTRYAG	1 cut(s)	390
BfuI	GTATCC	2 cut(s)	307, 694
BisI	GCNGC	4 cut(s)	30, 465, 731, 784
BlnI	CCTAGG	1 cut(s)	128
BlpI	GCTNAGC	1 cut(s)	779
BlsI	GCNGC	4 cut(s)	31, 466, 732, 785
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	2 cut(s)	667, 748
BmiI	GGNNCC	5 cut(s)	13, 534, 711, 750, 814
BmsI	GCATC	4 cut(s)	202, 602, 673, 779
BpiI	GAAGAC	1 cut(s)	377
Bpu1102I	GCTNAGC	1 cut(s)	779
BpuEI	CTTGAG	1 cut(s)	72
BsaJI	CCNNGG	3 cut(s)	128, 588, 756
BsaWI	WCCGGW	2 cut(s)	331, 815
Bsc4I	CCNNNNNNNGG	4 cut(s)	89, 653, 757, 758
Bse3DI	GCAATG	2 cut(s)	563, 641
BseAI	TCCGGA	2 cut(s)	331, 815
BseDI	CCNNGG	3 cut(s)	128, 588, 756
BseGI	GGATG	5 cut(s)	68, 139, 217, 805, 832
BseLI	CCNNNNNNNGG	4 cut(s)	89, 653, 757, 758
BseMI	GCAATG	2 cut(s)	563, 641
BseMII	CTCAG	1 cut(s)	696
BseRI	GAGGAG	3 cut(s)	69, 72, 75
BseXI	GCAGC	4 cut(s)	16, 476, 742, 770
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	668, 749
BshNI	GGYRCC	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	332, 746, 816
BslFI	GGGAC	2 cut(s)	257, 386
BslI	CCNNNNNNNGG	4 cut(s)	89, 653, 757, 758
BsmAI	GTCTC	2 cut(s)	288, 506
BsmFI	GGGAC	2 cut(s)	257, 386
BsnI	GGCC	2 cut(s)	668, 749
BsoBI	CYCGRG	1 cut(s)	285
Bsp13I	TCCGGA	2 cut(s)	331, 815
Bsp143I	GATC	3 cut(s)	230, 468, 532
Bsp1720I	GCTNAGC	1 cut(s)	779
Bsp19I	CCATGG	1 cut(s)	756
BspACI	CCGC	2 cut(s)	491, 833
BspANI	GGCC	2 cut(s)	668, 749
BspCNI	CTCAG	1 cut(s)	697
BspEI	TCCGGA	2 cut(s)	331, 815
BspLI	GGNNCC	5 cut(s)	13, 534, 711, 750, 814
BspPI	GGATC	3 cut(s)	238, 527, 540
BspT107I	GGYRCC	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	563, 641
BssECI	CCNNGG	3 cut(s)	128, 588, 756
BssMI	GATC	3 cut(s)	230, 468, 532
BssT1I	CCWWGG	3 cut(s)	128, 588, 756
Bst6I	CTCTTC	1 cut(s)	273
BstDEI	CTNAG	4 cut(s)	216, 552, 705, 779
BstDSI	CCRYGG	1 cut(s)	756
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	5 cut(s)	68, 139, 217, 805, 832
BstKTI	GATC	3 cut(s)	233, 471, 535
BstMAI	GTCTC	2 cut(s)	288, 506
BstMBI	GATC	3 cut(s)	230, 468, 532
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	4 cut(s)	16, 476, 742, 770
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BsuI	GTATCC	2 cut(s)	307, 694
BsuRI	GGCC	2 cut(s)	668, 749
BtgI	CCRYGG	1 cut(s)	756
BtsCI	GGATG	5 cut(s)	68, 139, 217, 805, 832
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	1 cut(s)	518
Cfr13I	GGNCC	2 cut(s)	667, 748
CseI	GACGC	1 cut(s)	606
Csp6I	GTAC	4 cut(s)	359, 447, 507, 657
CviAII	CATG	2 cut(s)	425, 757
CviQI	GTAC	4 cut(s)	359, 447, 507, 657
DdeI	CTNAG	4 cut(s)	216, 552, 705, 779
DpnI	GATC	3 cut(s)	232, 470, 534
DpnII	GATC	3 cut(s)	230, 468, 532
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	3 cut(s)	128, 588, 756
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	285
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	792
EcoT14I	CCWWGG	3 cut(s)	128, 588, 756
ErhI	CCWWGG	3 cut(s)	128, 588, 756
FaeI	CATG	2 cut(s)	428, 760
FaiI	YATR	5 cut(s)	150, 321, 348, 426, 758
FaqI	GGGAC	2 cut(s)	257, 386
FatI	CATG	2 cut(s)	424, 756
FauI	CCCGC	1 cut(s)	484
Fnu4HI	GCNGC	4 cut(s)	30, 465, 731, 784
FokI	GGATG	5 cut(s)	55, 146, 224, 812, 839
Fsp4HI	GCNGC	4 cut(s)	30, 465, 731, 784
FspBI	CTAG	4 cut(s)	129, 258, 452, 737
GluI	GCNGC	4 cut(s)	30, 465, 731, 784
GsaI	CCCAGC	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	668, 749
HapII	CCGG	3 cut(s)	332, 746, 816
HgaI	GACGC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	428, 760
HinfI	GANTC	4 cut(s)	182, 281, 413, 611
HpaII	CCGG	3 cut(s)	332, 746, 816
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	274, 724
Hpy188III	TCNNGA	5 cut(s)	222, 332, 713, 797, 816
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	3 cut(s)	37, 294, 414
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	464
HpyF3I	CTNAG	4 cut(s)	216, 552, 705, 779
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	428, 760
Kpn2I	TCCGGA	2 cut(s)	331, 815
Kzo9I	GATC	3 cut(s)	230, 468, 532
LmnI	GCTCC	4 cut(s)	46, 189, 748, 818
Lsp1109I	GCAGC	4 cut(s)	16, 476, 742, 770
LweI	GCATC	4 cut(s)	202, 602, 673, 779
MaeI	CTAG	4 cut(s)	129, 258, 452, 737
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	232, 470, 534
MboI	GATC	3 cut(s)	230, 468, 532
MboII	GAAGA	4 cut(s)	290, 365, 382, 588
MflI	RGATCY	1 cut(s)	532
MluCI	AATT	3 cut(s)	159, 342, 792
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	136
MroI	TCCGGA	2 cut(s)	331, 815
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	3 cut(s)	332, 746, 816
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	3 cut(s)	230, 468, 532
NlaIII	CATG	2 cut(s)	428, 760
NlaIV	GGNNCC	5 cut(s)	13, 534, 711, 750, 814
NmuCI	GTSAC	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	3 cut(s)	182, 413, 611
PkrI	GCNGC	4 cut(s)	31, 466, 732, 785
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	365
PspN4I	GGNNCC	5 cut(s)	13, 534, 711, 750, 814
PspPI	GGNCC	2 cut(s)	667, 748
PsuI	RGATCY	1 cut(s)	532
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	4 cut(s)	360, 448, 508, 658
RsaNI	GTAC	4 cut(s)	359, 447, 507, 657
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	4 cut(s)	30, 465, 731, 784
Sau3AI	GATC	3 cut(s)	230, 468, 532
Sau96I	GGNCC	2 cut(s)	667, 748
SchI	GAGTC	1 cut(s)	290
SfaNI	GCATC	4 cut(s)	202, 602, 673, 779
SfcI	CTRYAG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	3 cut(s)	159, 342, 792
SsiI	CCGC	2 cut(s)	491, 833
SspI	AATATT	1 cut(s)	719
SspMI	CTAG	4 cut(s)	129, 258, 452, 737
StyI	CCWWGG	3 cut(s)	128, 588, 756
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	599
TasI	AATT	3 cut(s)	159, 342, 792
TfiI	GAWTC	3 cut(s)	182, 413, 611
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	4 cut(s)	29, 464, 730, 783
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	6 cut(s)	137, 291, 335, 366, 471, 843
TspGWI	ACGGA	2 cut(s)	135, 839
TspRI	CASTG	1 cut(s)	525
XagI	CCTNNNNNAGG	1 cut(s)	87
XapI	RAATTY	2 cut(s)	342, 792
XmaJI	CCTAGG	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	4 cut(s)	129, 258, 452, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.