AT2G34310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006128
Physical Location & Seq
Reverse (-)
14477524 .. 14480078
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34310.6

Sequence Viewer

Length: 729 bp
ATGCCGCCTGGTGCCAAAAAGAGAAAGGCTTTGAAGAAGAAGCAGCAGGAGCAGGAAGCCACTGGAGTCGCTACCAACAACAAAGGCTTCAATGGTCATGGACATGATGAACATGGAAGCCAAGATGAGAGAGACAGTGATGGCAATTTGAGTTCCCCTGGATCTCAAGGAAATGAAGAATTTGGGACTAGAGATCCATCACCTCCTCCATTATCTAGTTTAGGGAAAGACATTGTTAAAGAGAAAGCAGAAGATGCAGACTTTACTGGGGGACAAGTAGCGAAAGGTGAAGACGTTATTGAAGTTGGAAGAGGAAGAACGGATCACGAGGAGAATGGTGTAAACAAACAACTCAATTCCTGTCCTGAAAATTTTACTCAAACTTCTAGAGAGGCTGATAGTACTTCAAGTTTGGAAATTTCACCTGCTCTTGATTCTGTCAAGCCTATGGGTTCTTCTGTCTCAAAAGTTGTGATGTCTGACAAAAGTAAGCAAGTTGAGAGTTCGACGGACTCGGATTCTCTCCAACAGAAGTCTGATGAAAAGGAAGAGATCCTTAGTCCAAGATCTGCTGAGGAAACTAACAAAGAAATCAAGAATGTGAAAGAATATGAAGTGCCAGAATGTTCTAAAGAAAAGAGTCTTTTGCCTTCTGGTCCACCAGTTTTTCGAACGTCGTGGTTGAGTTGCTGCGGTTTGTTTGATGTAATGGCAGGATCTGAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.14

Weight (kDa)

4.95

Isoelectric Point (pI)

62.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 433
Acc36I ACCTGC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 11
AciI CCGC 2 cut(s) 5, 693
AclWI GGATC 5 cut(s) 169, 188, 330, 547, 724
AcsI RAATTY 3 cut(s) 179, 370, 417
AfaI GTAC 1 cut(s) 403
AgsI TTSAA 4 cut(s) 34, 91, 302, 408
AjnI CCWGG 2 cut(s) 7, 157
Alw26I GTCTC 2 cut(s) 126, 466
AlwI GGATC 5 cut(s) 169, 188, 330, 547, 724
AlwNI CAGNNNCTG 1 cut(s) 719
ApeKI GCWGC 2 cut(s) 43, 690
ApoI RAATTY 3 cut(s) 179, 370, 417
AspS9I GGNCC 1 cut(s) 656
AsuHPI GGTGA 3 cut(s) 192, 299, 414
AsuII TTCGAA 1 cut(s) 670
AvaII GGWCC 1 cut(s) 656
BanI GGYRCC 1 cut(s) 11
BauI CACGAG 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 297
BbvCI CCTCAGC 1 cut(s) 573
BbvI GCAGC 2 cut(s) 55, 677
BccI CCATC 2 cut(s) 134, 205
BciT130I CCWGG 2 cut(s) 9, 159
BcoDI GTCTC 2 cut(s) 126, 466
BfaI CTAG 3 cut(s) 189, 216, 387
BfuAI ACCTGC 1 cut(s) 433
BglII AGATCT 1 cut(s) 566
BisI GCNGC 3 cut(s) 5, 44, 691
BlsI GCNGC 3 cut(s) 6, 45, 692
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 9, 159
Bme18I GGWCC 1 cut(s) 656
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 9, 159
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 670
BpuEI CTTGAG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 157
Bse1I ACTGG 3 cut(s) 67, 271, 662
BseBI CCWGG 2 cut(s) 9, 159
BseDI CCNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 3 cut(s) 67, 271, 662
BseRI GAGGAG 2 cut(s) 195, 344
BseXI GCAGC 2 cut(s) 55, 677
BshNI GGYRCC 1 cut(s) 11
BslFI GGGAC 2 cut(s) 199, 285
BsmAI GTCTC 2 cut(s) 126, 466
BsmFI GGGAC 2 cut(s) 199, 285
Bsp119I TTCGAA 1 cut(s) 670
Bsp143I GATC 6 cut(s) 161, 193, 322, 552, 566, 716
BspACI CCGC 2 cut(s) 5, 693
BspCNI CTCAG 1 cut(s) 565
BspLI GGNNCC 1 cut(s) 13
BspMI ACCTGC 1 cut(s) 433
BspPI GGATC 5 cut(s) 169, 188, 330, 547, 724
BspT104I TTCGAA 1 cut(s) 670
BspT107I GGYRCC 1 cut(s) 11
BsrI ACTGG 3 cut(s) 67, 271, 662
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 6 cut(s) 161, 193, 322, 552, 566, 716
BssSI CACGAG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 326
Bst2UI CCWGG 2 cut(s) 9, 159
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 2 cut(s) 304, 543
BstAPI GCANNNNNTGC 1 cut(s) 254
BstBI TTCGAA 1 cut(s) 670
BstDEI CTNAG 2 cut(s) 557, 573
BstKTI GATC 6 cut(s) 164, 196, 325, 555, 569, 719
BstMAI GTCTC 2 cut(s) 126, 466
BstMBI GATC 6 cut(s) 161, 193, 322, 552, 566, 716
BstMWI GCNNNNNNNGC 2 cut(s) 49, 254
BstNI CCWGG 2 cut(s) 9, 159
BstSCI CCNGG 2 cut(s) 7, 157
BstV1I GCAGC 2 cut(s) 55, 677
BstV2I GAAGAC 1 cut(s) 297
BstX2I RGATCY 5 cut(s) 161, 193, 552, 566, 716
BstYI RGATCY 5 cut(s) 161, 193, 552, 566, 716
BtsIMutI CAGTG 2 cut(s) 60, 142
BveI ACCTGC 1 cut(s) 433
CaiI CAGNNNCTG 1 cut(s) 719
Cfr13I GGNCC 1 cut(s) 656
Csp6I GTAC 1 cut(s) 402
CviAII CATG 3 cut(s) 98, 104, 113
CviJI RGCY 6 cut(s) 29, 59, 87, 120, 395, 445
CviKI_1 RGCY 6 cut(s) 29, 59, 87, 120, 395, 445
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 2 cut(s) 557, 573
DpnI GATC 6 cut(s) 163, 195, 324, 554, 568, 718
DpnII GATC 6 cut(s) 161, 193, 322, 552, 566, 716
Eam1104I CTCTTC 2 cut(s) 304, 543
EarI CTCTTC 2 cut(s) 304, 543
Eco47I GGWCC 1 cut(s) 656
EcoRII CCWGG 2 cut(s) 7, 157
FaeI CATG 3 cut(s) 101, 107, 116
FaiI YATR 5 cut(s) 99, 105, 114, 449, 612
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 2 cut(s) 199, 285
FatI CATG 3 cut(s) 97, 103, 112
Fnu4HI GCNGC 3 cut(s) 5, 44, 691
Fsp4HI GCNGC 3 cut(s) 5, 44, 691
FspBI CTAG 3 cut(s) 189, 216, 387
GluI GCNGC 3 cut(s) 5, 44, 691
GsuI CTGGAG 1 cut(s) 84
Hin1II CATG 3 cut(s) 101, 107, 116
HinfI GANTC 5 cut(s) 66, 434, 512, 518, 640
HphI GGTGA 3 cut(s) 192, 299, 414
Hpy166II GTNNAC 2 cut(s) 343, 659
Hpy188I TCNGA 4 cut(s) 481, 517, 538, 721
Hpy188III TCNNGA 5 cut(s) 326, 365, 387, 431, 595
Hpy8I GTNNAC 2 cut(s) 343, 659
Hpy99I CGWCG 2 cut(s) 511, 679
HpyAV CCTTC 1 cut(s) 660
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 2 cut(s) 294, 674
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 254
HpyF3I CTNAG 2 cut(s) 557, 573
HpySE526I ACGT 2 cut(s) 294, 674
Hsp92II CATG 3 cut(s) 101, 107, 116
Kzo9I GATC 6 cut(s) 161, 193, 322, 552, 566, 716
LmnI GCTCC 1 cut(s) 49
Lsp1109I GCAGC 2 cut(s) 55, 677
LweI GCATC 1 cut(s) 244
MaeI CTAG 3 cut(s) 189, 216, 387
MaeII ACGT 2 cut(s) 294, 674
MalI GATC 6 cut(s) 163, 195, 324, 554, 568, 718
MboI GATC 6 cut(s) 161, 193, 322, 552, 566, 716
MboII GAAGA 9 cut(s) 46, 49, 188, 263, 302, 321, 327, 447, 560
MflI RGATCY 5 cut(s) 161, 193, 552, 566, 716
MluCI AATT 5 cut(s) 145, 179, 355, 370, 417
MlyI GAGTC 3 cut(s) 75, 506, 649
MmeI TCCRAC 2 cut(s) 286, 550
MnlI CCTC 6 cut(s) 213, 216, 305, 322, 385, 568
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 9, 159
MvaI CCWGG 2 cut(s) 9, 159
MwoI GCNNNNNNNGC 2 cut(s) 49, 254
NdeII GATC 6 cut(s) 161, 193, 322, 552, 566, 716
NlaIII CATG 3 cut(s) 101, 107, 116
NlaIV GGNNCC 1 cut(s) 13
NspV TTCGAA 1 cut(s) 670
PaqCI CACCTGC 1 cut(s) 433
PfeI GAWTC 2 cut(s) 434, 518
PkrI GCNGC 3 cut(s) 6, 45, 692
PleI GAGTC 3 cut(s) 74, 506, 648
PpsI GAGTC 3 cut(s) 74, 506, 648
Psp6I CCWGG 2 cut(s) 7, 157
PspGI CCWGG 2 cut(s) 7, 157
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 656
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 5 cut(s) 161, 193, 552, 566, 716
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 3 cut(s) 5, 44, 691
Sau3AI GATC 6 cut(s) 161, 193, 322, 552, 566, 716
Sau96I GGNCC 1 cut(s) 656
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 3 cut(s) 75, 506, 649
ScrFI CCNGG 2 cut(s) 9, 159
SetI ASST 5 cut(s) 205, 289, 297, 427, 677
SfaNI GCATC 1 cut(s) 244
SfuI TTCGAA 1 cut(s) 670
SinI GGWCC 1 cut(s) 656
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 165
SmoI CTYRAG 1 cut(s) 165
Sse9I AATT 5 cut(s) 145, 179, 355, 370, 417
SsiI CCGC 2 cut(s) 5, 693
SspMI CTAG 3 cut(s) 189, 216, 387
StyD4I CCNGG 2 cut(s) 7, 157
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 2 cut(s) 297, 677
TaqI TCGA 2 cut(s) 506, 670
TasI AATT 5 cut(s) 145, 179, 355, 370, 417
TatI WGTACW 1 cut(s) 401
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 434, 518
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 67, 142
TseI GCWGC 2 cut(s) 43, 690
TspDTI ATGAA 4 cut(s) 123, 189, 555, 627
TspGWI ACGGA 2 cut(s) 335, 524
TspRI CASTG 2 cut(s) 67, 142
VpaK11BI GGWCC 1 cut(s) 656
XapI RAATTY 3 cut(s) 179, 370, 417
XbaI TCTAGA 1 cut(s) 386
XspI CTAG 3 cut(s) 189, 216, 387
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.