Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006128

Physical Location & Seq

Genomic Coordinates Reverse (-)

24789429 .. 24790869

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22430.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCCATCAGGTGCCAAGAAGCGAAAAGCTGCCAAGAAAAAGAAGGAGCAGCAAACCCACAACGGCACATCCAATCCTCCTCCTCTTCCTTCTCAAGGAAATAATGATGTGAACTCCCAAGATAAGGGAGTGCCTGGGGATGCCGAGGCAGTTCAGAGGGTTGAAATTGAGAGGGAACTGAGGGACAATTCAACAAGCAAAAATGTGATTATTGAGGATGCTAAGTCTGCAAAGGGATCATCTAACGGGGACGATAGAAGCTCTAGCAGTAGTAGTTCAGATGAAGAATCTCGAGCTGTTGATAGAAGGCGAAAGGAGGATATCCATACTTCAGTTTCGGAGGAAAAACCTCATAATGATTTGGTTAAGTCAGTCGATTCTACATCAGCTGGGAAGACTACTGAAGATTCACCAGCTGAGAAGACTACAAGTTCAGCTACTACAGAGAGTGCCCCTTCTGTTGATTCTGTTACGCATGAGGTTTCTGTGCACCTCTCAAAAAGGACGCCAGTTGAAAGTGCACCGATCTCCAATGAGGTAGTAAAAGCAGGGTTGGATAATGGTGCAGAGAAAACATTGCCTACTGTGGATCCTGTATCAAAGAAAATTGAGGATAAAGCATCGCCATTACTGGACAATACTGCTAAGGCATCTTCAAGTGTGGTGGAATCTGCGTCTCAAGAAAATGAGAGCAAAGTATTGCCATCATTAGGTACTTCTCTGGCCCAAGTTAGTAATGATGCTGAACCCATCAAAGATCCTGAGGTTCCAGAATATTCTGAAAAGCAGCCTCTGTTAGCTCCGGCTCCACCCGTGGCGCAAAAAACATCTTGGCTTAGCTGCTGTGGAATTCTGGAGGCTATAACAGGCTCCAATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

30.99

Weight (kDa)

5.26

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29530 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310
fragaria_vesca	FvH4_3g06440 FvH4_3g06440
malus_domestica	MD05G1292200.v1.1 MD10G1268000.v1.1
prunus_persica	Prupe.4G073200_v2.0.a1
pyrus_communis	pycom10g22430
rosa_chinensis	RchiOBHm_Chr5g0012861
rosa_laevigata	RLG00000031962
rosa_multiflora	Rmu_sc0002365.1_g000030 Rmu_sc0010496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063740
rosa_rugosa	Rorug05G0004700 Rorug05G0004700 Rorug05G0004800.1
rosa_samantha	Rh5AG098700 Rh5BG095400 Rh5CG107600 Rh5DG094200
rosa_wichuraiana	Rw5G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AclWI	GGATC	4 cut(s)	244, 584, 597, 752
AcsI	RAATTY	1 cut(s)	849
AcuI	CTGAAG	2 cut(s)	315, 423
AcyI	GRCGYC	1 cut(s)	506
AfaI	GTAC	1 cut(s)	715
AfiI	CCNNNNNNNGG	3 cut(s)	95, 124, 710
AgsI	TTSAA	4 cut(s)	164, 192, 515, 657
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	8 cut(s)	29, 261, 296, 389, 416, 437, 800, 840
AluI	AGCT	8 cut(s)	29, 261, 296, 389, 416, 437, 800, 840
Alw21I	GWGCWC	2 cut(s)	492, 523
Alw26I	GTCTC	1 cut(s)	681
Alw44I	GTGCAC	2 cut(s)	488, 519
AlwI	GGATC	4 cut(s)	244, 584, 597, 752
AlwNI	CAGNNNCTG	1 cut(s)	793
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	1 cut(s)	723
ApaLI	GTGCAC	2 cut(s)	488, 519
ApeKI	GCWGC	4 cut(s)	29, 49, 787, 840
ApoI	RAATTY	1 cut(s)	849
AspLEI	GCGC	1 cut(s)	820
AspS9I	GGNCC	1 cut(s)	724
AsuHPI	GGTGA	1 cut(s)	402
AvaI	CYCGRG	1 cut(s)	291
AxyI	CCTNAGG	1 cut(s)	762
BaeGI	GKGCMC	3 cut(s)	454, 492, 523
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	401, 428
Bbv12I	GWGCWC	2 cut(s)	492, 523
BbvI	GCAGC	4 cut(s)	16, 61, 799, 827
BccI	CCATC	3 cut(s)	13, 712, 758
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	681
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	441
BisI	GCNGC	4 cut(s)	30, 50, 788, 841
BlpI	GCTNAGC	1 cut(s)	836
BlsI	GCNGC	4 cut(s)	31, 51, 789, 842
Bme1390I	CCNGG	1 cut(s)	135
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	724
BmiI	GGNNCC	5 cut(s)	13, 591, 768, 807, 871
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	5 cut(s)	130, 208, 629, 659, 730
BpiI	GAAGAC	2 cut(s)	401, 428
BpmI	CTGGAG	1 cut(s)	875
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu1102I	GCTNAGC	1 cut(s)	836
BpuEI	CTTGAG	2 cut(s)	78, 663
BsaHI	GRCGYC	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	134, 144, 813
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 124, 710
Bse1I	ACTGG	2 cut(s)	509, 636
Bse21I	CCTNAGG	1 cut(s)	762
Bse3DI	GCAATG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	134, 144, 813
BseGI	GGATG	3 cut(s)	68, 145, 223
BseLI	CCNNNNNNNGG	3 cut(s)	95, 124, 710
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	3 cut(s)	170, 408, 753
BseNI	ACTGG	2 cut(s)	509, 636
BseRI	GAGGAG	2 cut(s)	69, 72
BseSI	GKGCMC	3 cut(s)	454, 492, 523
BseXI	GCAGC	4 cut(s)	16, 61, 799, 827
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	585
BshFI	GGCC	1 cut(s)	725
BshNI	GGYRCC	1 cut(s)	11
BsiHKAI	GWGCWC	2 cut(s)	492, 523
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	803
BslFI	GGGAC	2 cut(s)	197, 263
BslI	CCNNNNNNNGG	3 cut(s)	95, 124, 710
BsmAI	GTCTC	1 cut(s)	681
BsmBI	CGTCTC	1 cut(s)	681
BsmFI	GGGAC	2 cut(s)	197, 263
BsnI	GGCC	1 cut(s)	725
BsoBI	CYCGRG	1 cut(s)	291
Bsp1286I	GDGCHC	3 cut(s)	454, 492, 523
Bsp143I	GATC	4 cut(s)	236, 525, 589, 757
Bsp1720I	GCTNAGC	1 cut(s)	836
BspANI	GGCC	1 cut(s)	725
BspCNI	CTCAG	3 cut(s)	171, 409, 754
BspLI	GGNNCC	5 cut(s)	13, 591, 768, 807, 871
BspPI	GGATC	4 cut(s)	244, 584, 597, 752
BspT107I	GGYRCC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	575
BsrI	ACTGG	2 cut(s)	509, 636
BssECI	CCNNGG	3 cut(s)	134, 144, 813
BssMI	GATC	4 cut(s)	236, 525, 589, 757
BssNI	GRCGYC	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	506
BstDEI	CTNAG	6 cut(s)	179, 222, 417, 645, 762, 836
BstDSI	CCRYGG	1 cut(s)	813
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	68, 145, 223
BstHHI	GCGC	1 cut(s)	820
BstKTI	GATC	4 cut(s)	239, 528, 592, 760
BstMAI	GTCTC	1 cut(s)	681
BstMBI	GATC	4 cut(s)	236, 525, 589, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	441
BstSLI	GKGCMC	3 cut(s)	454, 492, 523
BstV1I	GCAGC	4 cut(s)	16, 61, 799, 827
BstV2I	GAAGAC	2 cut(s)	401, 428
BstX2I	RGATCY	2 cut(s)	589, 757
BstYI	RGATCY	2 cut(s)	589, 757
Bsu36I	CCTNAGG	1 cut(s)	762
BsuRI	GGCC	1 cut(s)	725
BtgI	CCRYGG	1 cut(s)	813
BtgZI	GCGATG	1 cut(s)	606
BtsCI	GGATG	3 cut(s)	68, 145, 223
CaiI	CAGNNNCTG	1 cut(s)	793
CfoI	GCGC	1 cut(s)	820
Cfr13I	GGNCC	1 cut(s)	724
CseI	GACGC	2 cut(s)	514, 663
Csp6I	GTAC	1 cut(s)	714
CspCI	CAANNNNNGTGG	2 cut(s)	645, 680
CviAII	CATG	1 cut(s)	476
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	6 cut(s)	179, 222, 417, 645, 762, 836
DpnI	GATC	4 cut(s)	238, 527, 591, 759
DpnII	GATC	4 cut(s)	236, 525, 589, 757
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	315, 423
Eco81I	CCTNAGG	1 cut(s)	762
Eco88I	CYCGRG	1 cut(s)	291
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	849
EcoRII	CCWGG	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	681
FaeI	CATG	1 cut(s)	479
FaiI	YATR	4 cut(s)	327, 354, 477, 863
FaqI	GGGAC	2 cut(s)	197, 263
FatI	CATG	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	30, 50, 788, 841
FokI	GGATG	3 cut(s)	55, 152, 230
Fsp4HI	GCNGC	4 cut(s)	30, 50, 788, 841
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	819
GluI	GCNGC	4 cut(s)	30, 50, 788, 841
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	875
HaeIII	GGCC	1 cut(s)	725
HapII	CCGG	1 cut(s)	803
HgaI	GACGC	2 cut(s)	514, 663
HhaI	GCGC	1 cut(s)	820
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	1 cut(s)	479
Hin6I	GCGC	1 cut(s)	818
HinP1I	GCGC	1 cut(s)	818
HinfI	GANTC	5 cut(s)	287, 377, 407, 464, 668
HpaII	CCGG	1 cut(s)	803
HphI	GGTGA	1 cut(s)	402
Hpy166II	GTNNAC	3 cut(s)	112, 490, 521
Hpy188I	TCNGA	4 cut(s)	156, 280, 340, 781
Hpy188III	TCNNGA	5 cut(s)	291, 680, 761, 770, 854
Hpy8I	GTNNAC	3 cut(s)	112, 490, 521
HpyAV	CCTTC	4 cut(s)	37, 99, 300, 465
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4V	TGCA	4 cut(s)	230, 490, 521, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	6 cut(s)	179, 222, 417, 645, 762, 836
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	1 cut(s)	479
HspAI	GCGC	1 cut(s)	818
Kzo9I	GATC	4 cut(s)	236, 525, 589, 757
LmnI	GCTCC	4 cut(s)	46, 805, 811, 875
Lsp1109I	GCAGC	4 cut(s)	16, 61, 799, 827
LweI	GCATC	5 cut(s)	130, 208, 629, 659, 730
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	4 cut(s)	238, 527, 591, 759
MboI	GATC	4 cut(s)	236, 525, 589, 757
MboII	GAAGA	6 cut(s)	77, 296, 406, 416, 433, 645
MflI	RGATCY	2 cut(s)	589, 757
MhlI	GDGCHC	3 cut(s)	454, 492, 523
MluCI	AATT	4 cut(s)	165, 187, 606, 849
MmeI	TCCRAC	1 cut(s)	534
MseI	TTAA	1 cut(s)	366
MspA1I	CMGCKG	2 cut(s)	389, 416
MspI	CCGG	1 cut(s)	803
MspR9I	CCNGG	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	4 cut(s)	236, 525, 589, 757
NlaIII	CATG	1 cut(s)	479
NlaIV	GGNNCC	5 cut(s)	13, 591, 768, 807, 871
NmeAIII	GCCGAG	1 cut(s)	169
PaeR7I	CTCGAG	1 cut(s)	291
PfeI	GAWTC	5 cut(s)	287, 377, 407, 464, 668
PkrI	GCNGC	4 cut(s)	31, 51, 789, 842
Psp6I	CCWGG	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	5 cut(s)	13, 591, 768, 807, 871
PspPI	GGNCC	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	589, 757
PvuII	CAGCTG	2 cut(s)	389, 416
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	4 cut(s)	30, 50, 788, 841
Sau3AI	GATC	4 cut(s)	236, 525, 589, 757
Sau96I	GGNCC	1 cut(s)	724
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	3 cut(s)	454, 492, 523
SfaNI	GCATC	5 cut(s)	130, 208, 629, 659, 730
SfcI	CTRYAG	1 cut(s)	441
Sfr274I	CTCGAG	1 cut(s)	291
SlaI	CTCGAG	1 cut(s)	291
SmlI	CTYRAG	3 cut(s)	93, 291, 678
SmoI	CTYRAG	3 cut(s)	93, 291, 678
Sse9I	AATT	4 cut(s)	165, 187, 606, 849
SspI	AATATT	1 cut(s)	776
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	586
TaqI	TCGA	2 cut(s)	292, 375
TasI	AATT	4 cut(s)	165, 187, 606, 849
TfiI	GAWTC	5 cut(s)	287, 377, 407, 464, 668
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseI	GCWGC	4 cut(s)	29, 49, 787, 840
TspDTI	ATGAA	1 cut(s)	297
VneI	GTGCAC	2 cut(s)	488, 519
XagI	CCTNNNNNAGG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	849
XhoI	CTCGAG	1 cut(s)	291
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.