Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006128

Physical Location & Seq

Genomic Coordinates Reverse (-)

36088104 .. 36091216

Gene Structure 3113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1268000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCCATCAGGTGCCAAGAAGCGAAAAGCTGCCAAGAAAAAGAAGGAGCGGCAAACCCACAACGGCACATCCAATCCTCCTCCTCCTTCTCAAGGAAATAATGATGTGAACTCCCAAGATAAGGGAGTGCCTGGGGATGCCGAGGCAGTTCAGAGAGTTGAAATTGAGAGGGAATTGAGAGACAATTCAACAGGCAAAAATGTGATTATTGAGGATGCTAAGTCTGCAAAGGGATCATCTAACGGGGACGATAGAAGCTCTAGCAGTAGTAGTTCAGATGAAGAATCTCGAGCTGTTGATAGAAGGCGAAAGGAGGATATCCATACTTCAGTTTCGGAGGAAAAACCTCATAATGATTTGGTTAAGTCAGTCGATTCTACATCAGCTGGGAAGACTACTGAAGATGCACCAGCTGGGAAGACTACAAGTTCAGCTACTACAGAGATTGCCCCTTCTTTTGATTCTGTTACGCATGAGGTTTCTGTGCACCTCTCAAAAAGGACGCCAGTTGAAATTGCACCGATCTCCAATGATGTAGTAAAAGCAGGGTTGGATAATGGTGCAGAGAAAACGTTGCCTACTGGGGATCCTGTATCAAAGAAAATTGAGGATAAAGCATCGCCATTTCTGGACGATACTGCCAAGGCATCTTCAAGTGTGGTGGAATCTGCGTCTAAAGAAAATGAGAGCAAAGTATTGCCATCATTAGGTACTTCTCTGGCCCAAGTTAGTAATGATGCTGAACCCATCAAAGATGCTGATGTTCCAGAATATTCTGAAAAGCAGCCTCTGTTAGCTCCGGCTCCACCCGTGGCGCAAAAAACATGTTGGCTTAGCTGCTGTGGAATTCTGGATGCTATAACAGGCTCCAATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

30.82

Weight (kDa)

5.43

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29530 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310
fragaria_vesca	FvH4_3g06440 FvH4_3g06440
malus_domestica	MD05G1292200.v1.1 MD10G1268000.v1.1
prunus_persica	Prupe.4G073200_v2.0.a1
pyrus_communis	pycom10g22430
rosa_chinensis	RchiOBHm_Chr5g0012861
rosa_laevigata	RLG00000031962
rosa_multiflora	Rmu_sc0002365.1_g000030 Rmu_sc0010496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063740
rosa_rugosa	Rorug05G0004700 Rorug05G0004700 Rorug05G0004800.1
rosa_samantha	Rh5AG098700 Rh5BG095400 Rh5CG107600 Rh5DG094200
rosa_wichuraiana	Rw5G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccBSI	CCGCTC	1 cut(s)	49
AciI	CCGC	1 cut(s)	49
AclI	AACGTT	1 cut(s)	572
AclWI	GGATC	3 cut(s)	241, 581, 594
AcsI	RAATTY	1 cut(s)	846
AcuI	CTGAAG	2 cut(s)	312, 420
AcyI	GRCGYC	1 cut(s)	503
AfaI	GTAC	1 cut(s)	712
AfiI	CCNNNNNNNGG	3 cut(s)	92, 121, 707
AflIII	ACRYGT	1 cut(s)	824
AgsI	TTSAA	4 cut(s)	161, 189, 512, 654
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	8 cut(s)	29, 258, 293, 386, 413, 434, 797, 837
AluI	AGCT	8 cut(s)	29, 258, 293, 386, 413, 434, 797, 837
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	1 cut(s)	174
Alw44I	GTGCAC	1 cut(s)	485
AlwI	GGATC	3 cut(s)	241, 581, 594
AlwNI	CAGNNNCTG	1 cut(s)	790
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	1 cut(s)	720
ApaLI	GTGCAC	1 cut(s)	485
ApeKI	GCWGC	3 cut(s)	29, 784, 837
ApoI	RAATTY	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	817
AspS9I	GGNCC	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	398, 425
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	16, 796, 824
BccI	CCATC	3 cut(s)	13, 709, 755
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	438
BisI	GCNGC	4 cut(s)	30, 50, 785, 838
BlpI	GCTNAGC	1 cut(s)	833
BlsI	GCNGC	4 cut(s)	31, 51, 786, 839
Bme1390I	CCNGG	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	721
BmiI	GGNNCC	4 cut(s)	13, 588, 804, 868
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	8 cut(s)	127, 205, 394, 626, 656, 727, 745, 844
BmuI	ACTGGG	1 cut(s)	591
BpiI	GAAGAC	2 cut(s)	398, 425
Bpu1102I	GCTNAGC	1 cut(s)	833
BpuEI	CTTGAG	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	503
BsaJI	CCNNGG	4 cut(s)	131, 141, 642, 810
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 121, 707
Bse1I	ACTGG	2 cut(s)	506, 586
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	4 cut(s)	131, 141, 642, 810
BseGI	GGATG	4 cut(s)	68, 142, 220, 859
BseLI	CCNNNNNNNGG	3 cut(s)	92, 121, 707
BseNI	ACTGG	2 cut(s)	506, 586
BseRI	GAGGAG	2 cut(s)	69, 72
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	3 cut(s)	16, 796, 824
BseYI	CCCAGC	2 cut(s)	386, 413
BsgI	GTGCAG	1 cut(s)	582
BshFI	GGCC	1 cut(s)	722
BshNI	GGYRCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	489
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	800
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	3 cut(s)	92, 121, 707
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	722
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	3 cut(s)	233, 522, 586
Bsp1720I	GCTNAGC	1 cut(s)	833
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	722
BspLI	GGNNCC	4 cut(s)	13, 588, 804, 868
BspPI	GGATC	3 cut(s)	241, 581, 594
BspT107I	GGYRCC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	506, 586
BssECI	CCNNGG	4 cut(s)	131, 141, 642, 810
BssMI	GATC	3 cut(s)	233, 522, 586
BssNI	GRCGYC	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	503
BstDEI	CTNAG	2 cut(s)	219, 833
BstDSI	CCRYGG	1 cut(s)	810
BstENI	CCTNNNNNAGG	1 cut(s)	90
BstF5I	GGATG	4 cut(s)	68, 142, 220, 859
BstHHI	GCGC	1 cut(s)	817
BstKTI	GATC	3 cut(s)	236, 525, 589
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	3 cut(s)	233, 522, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	828
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	438
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	3 cut(s)	16, 796, 824
BstV2I	GAAGAC	2 cut(s)	398, 425
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
BsuRI	GGCC	1 cut(s)	722
BtgI	CCRYGG	1 cut(s)	810
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	4 cut(s)	68, 142, 220, 859
CaiI	CAGNNNCTG	1 cut(s)	790
CfoI	GCGC	1 cut(s)	817
Cfr13I	GGNCC	1 cut(s)	721
CseI	GACGC	2 cut(s)	511, 660
Csp6I	GTAC	1 cut(s)	711
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	2 cut(s)	473, 825
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	2 cut(s)	219, 833
DpnI	GATC	3 cut(s)	235, 524, 588
DpnII	GATC	3 cut(s)	233, 522, 586
Eco130I	CCWWGG	1 cut(s)	642
Eco32I	GATATC	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	312, 420
Eco88I	CYCGRG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	2 cut(s)	476, 828
FaiI	YATR	5 cut(s)	324, 351, 474, 826, 860
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	472, 824
Fnu4HI	GCNGC	4 cut(s)	30, 50, 785, 838
FokI	GGATG	4 cut(s)	55, 149, 227, 866
Fsp4HI	GCNGC	4 cut(s)	30, 50, 785, 838
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	816
GluI	GCNGC	4 cut(s)	30, 50, 785, 838
GsaI	CCCAGC	2 cut(s)	390, 417
HaeIII	GGCC	1 cut(s)	722
HapII	CCGG	1 cut(s)	800
HgaI	GACGC	2 cut(s)	511, 660
HhaI	GCGC	1 cut(s)	817
Hin1I	GRCGYC	1 cut(s)	503
Hin1II	CATG	2 cut(s)	476, 828
Hin6I	GCGC	1 cut(s)	815
HinP1I	GCGC	1 cut(s)	815
HinfI	GANTC	4 cut(s)	284, 374, 461, 665
HpaII	CCGG	1 cut(s)	800
Hpy166II	GTNNAC	2 cut(s)	109, 487
Hpy188I	TCNGA	4 cut(s)	153, 277, 337, 778
Hpy188III	TCNNGA	4 cut(s)	288, 629, 767, 851
Hpy8I	GTNNAC	2 cut(s)	109, 487
HpyAV	CCTTC	4 cut(s)	37, 96, 297, 462
HpyCH4IV	ACGT	1 cut(s)	572
HpyCH4V	TGCA	5 cut(s)	227, 407, 487, 518, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	2 cut(s)	219, 833
HpySE526I	ACGT	1 cut(s)	572
Hsp92I	GRCGYC	1 cut(s)	503
Hsp92II	CATG	2 cut(s)	476, 828
HspAI	GCGC	1 cut(s)	815
Kzo9I	GATC	3 cut(s)	233, 522, 586
LmnI	GCTCC	4 cut(s)	46, 802, 808, 872
Lsp1109I	GCAGC	3 cut(s)	16, 796, 824
LweI	GCATC	8 cut(s)	127, 205, 394, 626, 656, 727, 745, 844
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	1 cut(s)	572
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	3 cut(s)	235, 524, 588
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	3 cut(s)	233, 522, 586
MboII	GAAGA	5 cut(s)	293, 403, 413, 430, 642
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	489
MluCI	AATT	6 cut(s)	162, 173, 184, 513, 603, 846
MmeI	TCCRAC	1 cut(s)	531
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	386, 413
MspI	CCGG	1 cut(s)	800
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	3 cut(s)	233, 522, 586
NlaIII	CATG	2 cut(s)	476, 828
NlaIV	GGNNCC	4 cut(s)	13, 588, 804, 868
NmeAIII	GCCGAG	1 cut(s)	166
NspI	RCATGY	1 cut(s)	828
PaeR7I	CTCGAG	1 cut(s)	288
PciI	ACATGT	1 cut(s)	824
PfeI	GAWTC	4 cut(s)	284, 374, 461, 665
PkrI	GCNGC	4 cut(s)	31, 51, 786, 839
PscI	ACATGT	1 cut(s)	824
Psp1406I	AACGTT	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	2 cut(s)	386, 413
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	4 cut(s)	13, 588, 804, 868
PspPI	GGNCC	1 cut(s)	721
PstNI	CAGNNNCTG	1 cut(s)	790
PsuI	RGATCY	1 cut(s)	586
PvuII	CAGCTG	2 cut(s)	386, 413
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	4 cut(s)	30, 50, 785, 838
Sau3AI	GATC	3 cut(s)	233, 522, 586
Sau96I	GGNCC	1 cut(s)	721
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	8 cut(s)	127, 205, 394, 626, 656, 727, 745, 844
SfcI	CTRYAG	1 cut(s)	438
Sfr274I	CTCGAG	1 cut(s)	288
SlaI	CTCGAG	1 cut(s)	288
SmlI	CTYRAG	2 cut(s)	90, 288
SmoI	CTYRAG	2 cut(s)	90, 288
Sse9I	AATT	6 cut(s)	162, 173, 184, 513, 603, 846
SsiI	CCGC	1 cut(s)	49
SspI	AATATT	1 cut(s)	773
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	642
TaiI	ACGT	1 cut(s)	575
TaqI	TCGA	2 cut(s)	289, 372
TasI	AATT	6 cut(s)	162, 173, 184, 513, 603, 846
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	4 cut(s)	284, 374, 461, 665
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseI	GCWGC	3 cut(s)	29, 784, 837
TspDTI	ATGAA	1 cut(s)	294
VneI	GTGCAC	1 cut(s)	485
XagI	CCTNNNNNAGG	1 cut(s)	90
XapI	RAATTY	1 cut(s)	846
XceI	RCATGY	1 cut(s)	828
XhoI	CTCGAG	1 cut(s)	288
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.