Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006128

Physical Location & Seq

Genomic Coordinates Reverse (-)

3695027 .. 3699419

Gene Structure 4393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGCCGTCAGGTGCTAAGAGAAGAAAGGCCGCCAAGAAAAAGAAGGAGCAGGAGACCCAGAATGGGGATTCATCAACAACCAACAAAGCCAACCCTCAAGGAGATGAAGGGAAAATCCGGGATGAGAAAGGAAGTGATAGTGGTCAGGTTGACTCTAAACCTCTAGCTAAAGAGTGGAGACCAGTTGCTAAAGGTAAGTCCGTAGAGGGAGATTCTAGTGATGCAGAGGCTACACGGAAAGATGGCGGTGTTAAATTTGAGAGGGATTTGAAGGAGGGTTCCAAGAGCAATAAGCGTGCTGGGTCTGGAAAGGAATCAAGTAAAGGTTCGAGTAGTAGCGGTAGCGGTAGTAGTAGTAGTTCAGATGGCGAGTCTCGCGTTGTTGACAGGAGAAGGAAGGAGAAGGGCGATGCTTCAGAGGAAAAACCTGCTAGTGTTTCAGAGGGAAAACCTGCTCGTGTTTCAGAGGAAAAACCTGCTAGTGTTTCAGAAGGTAAACCTGCTAGTGTTTCAGACGGAAAACCAACTCATGTTTCAAAAGAAAAACCTGCTGGTGTGTCAGAGGGAAAACCAGCTCGTGTTTCAGAGGAAAAACCTGCTAGTGTTTCGGAGGAAAAACCTGCTAGTGATTTAGTTAAGTCAGTTGATTCTTTACTAGCAGAAGTGACTCACTCTGCTGGAGATGCACCGGCTGAGAAGACTACGAGTTTAGATGCAGAAAAGACCCATTCACTTCATTCTGATAAGCCTGTAGCTTCTGTTCCTGGGATGACTGTGCACCTTACAGAAACTACTCAAGTTGACGGTCTAGTGATCTCTGGTACAGTGGTAAAACCGGCTGTGGAGAGTGGTACAGAGAAATTGTTGCCTACTGGGGATCCAGAAAGTTTGACAGATTCTCTGCCAGAGAAAATCGAGAGTATGGTGACTCCCATGCCAATTGAGAATGGTAAGGCATCTCCGAGTATGGCGGAATCTGTATCTAAAGAAAATGGGAGTAAAGTGTTGCCATCCTTAGTTGTTTCTGTCGCTCAAACTAGTAATGATGCTGGATCCATTAAAGATTCCGAAATTCCAGAGTATTCTGAAAGCCAGCCGCTAGTAGCTCCTGCCCCACGAGTGGTAGAAAAAACTTCTTGGTTTGGTTGCTGCGGAATTCTGGACGTGATAACAGGCTCTAGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

396

Amino Acids

41.16

Weight (kDa)

5.95

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29530 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310
fragaria_vesca	FvH4_3g06440 FvH4_3g06440
malus_domestica	MD05G1292200.v1.1 MD10G1268000.v1.1
prunus_persica	Prupe.4G073200_v2.0.a1
pyrus_communis	pycom10g22430
rosa_chinensis	RchiOBHm_Chr5g0012861
rosa_laevigata	RLG00000031962
rosa_multiflora	Rmu_sc0002365.1_g000030 Rmu_sc0010496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063740
rosa_rugosa	Rorug05G0004700 Rorug05G0004700 Rorug05G0004800.1
rosa_samantha	Rh5AG098700 Rh5BG095400 Rh5CG107600 Rh5DG094200
rosa_wichuraiana	Rw5G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	7 cut(s)	436, 460, 484, 508, 556, 604, 628
AccII	CGCG	1 cut(s)	378
AciI	CCGC	7 cut(s)	30, 246, 339, 345, 971, 1097, 1152
AclWI	GGATC	4 cut(s)	872, 885, 1047, 1060
AcsI	RAATTY	3 cut(s)	254, 1071, 1155
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	2 cut(s)	823, 853
AfiI	CCNNNNNNNGG	3 cut(s)	63, 64, 1120
AgsI	TTSAA	2 cut(s)	271, 537
AhlI	ACTAGT	1 cut(s)	1037
AjiI	CACGTC	1 cut(s)	1165
AjnI	CCWGG	1 cut(s)	763
AjuI	GAANNNNNNNTTGG	2 cut(s)	517, 549
AluBI	AGCT	4 cut(s)	167, 575, 755, 1106
AluI	AGCT	4 cut(s)	167, 575, 755, 1106
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	3 cut(s)	47, 172, 378
Alw44I	GTGCAC	1 cut(s)	776
AlwI	GGATC	4 cut(s)	872, 885, 1047, 1060
AoxI	GGCC	1 cut(s)	27
ApaLI	GTGCAC	1 cut(s)	776
ApeKI	GCWGC	1 cut(s)	1149
ApoI	RAATTY	3 cut(s)	254, 1071, 1155
AsuC2I	CCSGG	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	937
BaeGI	GKGCMC	1 cut(s)	780
BaeI	ACNNNNGTAYC	2 cut(s)	813, 846
BamHI	GGATCC	2 cut(s)	877, 1052
BauI	CACGAG	3 cut(s)	456, 576, 1116
BbsI	GAAGAC	1 cut(s)	704
Bbv12I	GWGCWC	1 cut(s)	780
BbvI	GCAGC	1 cut(s)	1136
BccI	CCATC	3 cut(s)	236, 359, 1018
BciT130I	CCWGG	1 cut(s)	765
BcnI	CCSGG	1 cut(s)	119
BcoDI	GTCTC	3 cut(s)	47, 172, 378
BcuI	ACTAGT	1 cut(s)	1037
BfmI	CTRYAG	1 cut(s)	750
BfuAI	ACCTGC	7 cut(s)	436, 460, 484, 508, 556, 604, 628
BisI	GCNGC	3 cut(s)	30, 1097, 1150
BlsI	GCNGC	3 cut(s)	31, 1098, 1151
Bme1390I	CCNGG	2 cut(s)	119, 765
BmgBI	CACGTC	1 cut(s)	1165
BmiI	GGNNCC	3 cut(s)	280, 879, 1054
BmrFI	CCNGG	2 cut(s)	119, 765
BmrI	ACTGGG	1 cut(s)	882
BmsI	GCATC	6 cut(s)	211, 400, 673, 703, 965, 1036
BmuI	ACTGGG	1 cut(s)	882
BpiI	GAAGAC	1 cut(s)	704
BpmI	CTGGAG	1 cut(s)	699
BpuEI	CTTGAG	2 cut(s)	81, 780
BpuMI	CCSGG	1 cut(s)	119
BsaI	GGTCTC	2 cut(s)	47, 172
BsaJI	CCNNGG	1 cut(s)	764
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 64, 1120
Bse118I	RCCGGY	2 cut(s)	688, 835
Bse1I	ACTGG	2 cut(s)	182, 877
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	764
BseGI	GGATG	3 cut(s)	127, 774, 1010
BseLI	CCNNNNNNNGG	3 cut(s)	63, 64, 1120
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	2 cut(s)	182, 877
BseSI	GKGCMC	1 cut(s)	780
BseXI	GCAGC	1 cut(s)	1136
BseYI	CCCAGC	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	780
BsiSI	CCGG	3 cut(s)	118, 689, 836
BslI	CCNNNNNNNGG	3 cut(s)	63, 64, 1120
BsmAI	GTCTC	3 cut(s)	47, 172, 378
BsnI	GGCC	1 cut(s)	29
Bso31I	GGTCTC	2 cut(s)	47, 172
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp143I	GATC	3 cut(s)	813, 877, 1052
BspACI	CCGC	7 cut(s)	30, 246, 339, 345, 971, 1097, 1152
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	685
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	280, 879, 1054
BspMI	ACCTGC	7 cut(s)	436, 460, 484, 508, 556, 604, 628
BspPI	GGATC	4 cut(s)	872, 885, 1047, 1060
BspTNI	GGTCTC	2 cut(s)	47, 172
BsrFI	RCCGGY	2 cut(s)	688, 835
BsrI	ACTGG	2 cut(s)	182, 877
BssAI	RCCGGY	2 cut(s)	688, 835
BssECI	CCNNGG	1 cut(s)	764
BssMI	GATC	3 cut(s)	813, 877, 1052
BssSI	CACGAG	3 cut(s)	456, 576, 1116
Bst2BI	CACGAG	3 cut(s)	456, 576, 1116
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	3 cut(s)	775, 806, 826
BstC8I	GCNNGC	2 cut(s)	297, 1094
BstDEI	CTNAG	3 cut(s)	15, 693, 1015
BstF5I	GGATG	3 cut(s)	127, 774, 1010
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	3 cut(s)	816, 880, 1055
BstMAI	GTCTC	3 cut(s)	47, 172, 378
BstMBI	GATC	3 cut(s)	813, 877, 1052
BstMWI	GCNNNNNNNGC	2 cut(s)	375, 683
BstNI	CCWGG	1 cut(s)	765
BstSCI	CCNGG	2 cut(s)	117, 763
BstSFI	CTRYAG	1 cut(s)	750
BstSLI	GKGCMC	1 cut(s)	780
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	1136
BstV2I	GAAGAC	1 cut(s)	704
BstX2I	RGATCY	2 cut(s)	877, 1052
BstYI	RGATCY	2 cut(s)	877, 1052
BsuRI	GGCC	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	1165
BtsCI	GGATG	3 cut(s)	127, 774, 1010
BtsIMutI	CAGTG	1 cut(s)	831
BveI	ACCTGC	7 cut(s)	436, 460, 484, 508, 556, 604, 628
Cac8I	GCNNGC	2 cut(s)	297, 1094
Cfr10I	RCCGGY	2 cut(s)	688, 835
Csp6I	GTAC	2 cut(s)	822, 852
CviAII	CATG	2 cut(s)	530, 934
CviQI	GTAC	2 cut(s)	822, 852
DdeI	CTNAG	3 cut(s)	15, 693, 1015
DpnI	GATC	3 cut(s)	815, 879, 1054
DpnII	GATC	3 cut(s)	813, 877, 1052
EciI	GGCGGA	1 cut(s)	986
Eco31I	GGTCTC	2 cut(s)	47, 172
Eco57I	CTGAAG	1 cut(s)	399
EcoRI	GAATTC	1 cut(s)	1155
EcoRII	CCWGG	1 cut(s)	763
FaeI	CATG	2 cut(s)	533, 937
FaiI	YATR	4 cut(s)	531, 923, 935, 968
FatI	CATG	2 cut(s)	529, 933
Fnu4HI	GCNGC	3 cut(s)	30, 1097, 1150
FokI	GGATG	3 cut(s)	134, 781, 997
Fsp4HI	GCNGC	3 cut(s)	30, 1097, 1150
GluI	GCNGC	3 cut(s)	30, 1097, 1150
GsaI	CCCAGC	1 cut(s)	303
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	3 cut(s)	118, 689, 836
Hin1II	CATG	2 cut(s)	533, 937
HincII	GTYRAC	3 cut(s)	151, 385, 802
HindII	GTYRAC	3 cut(s)	151, 385, 802
HpaII	CCGG	3 cut(s)	118, 689, 836
HphI	GGTGA	1 cut(s)	937
Hpy166II	GTNNAC	5 cut(s)	151, 385, 497, 778, 802
Hpy188III	TCNNGA	5 cut(s)	306, 881, 916, 1076, 1160
Hpy8I	GTNNAC	5 cut(s)	151, 385, 497, 778, 802
HpyAV	CCTTC	7 cut(s)	37, 101, 265, 387, 391, 397, 485
HpyCH4III	ACNGT	3 cut(s)	775, 806, 826
HpyCH4IV	ACGT	1 cut(s)	1164
HpyCH4V	TGCA	4 cut(s)	224, 686, 716, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	375, 683
HpyF3I	CTNAG	3 cut(s)	15, 693, 1015
HpySE526I	ACGT	1 cut(s)	1164
Hsp92II	CATG	2 cut(s)	533, 937
Kzo9I	GATC	3 cut(s)	813, 877, 1052
LmnI	GCTCC	2 cut(s)	46, 1111
Lsp1109I	GCAGC	1 cut(s)	1136
LweI	GCATC	6 cut(s)	211, 400, 673, 703, 965, 1036
MaeII	ACGT	1 cut(s)	1164
MaeIII	GTNAC	2 cut(s)	664, 925
MalI	GATC	3 cut(s)	815, 879, 1054
MboI	GATC	3 cut(s)	813, 877, 1052
MboII	GAAGA	2 cut(s)	33, 709
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	2 cut(s)	877, 1052
MhlI	GDGCHC	1 cut(s)	780
MluCI	AATT	5 cut(s)	254, 860, 939, 1071, 1155
MlyI	GAGTC	4 cut(s)	146, 380, 661, 922
MseI	TTAA	3 cut(s)	252, 636, 1059
MspI	CCGG	3 cut(s)	118, 689, 836
MspR9I	CCNGG	2 cut(s)	119, 765
MunI	CAATTG	1 cut(s)	939
MvaI	CCWGG	1 cut(s)	765
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	375, 683
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	3 cut(s)	813, 877, 1052
NlaIII	CATG	2 cut(s)	533, 937
NlaIV	GGNNCC	3 cut(s)	280, 879, 1054
NmuCI	GTSAC	2 cut(s)	664, 925
PfeI	GAWTC	7 cut(s)	68, 212, 314, 647, 896, 974, 1064
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	31, 1098, 1151
PleI	GAGTC	4 cut(s)	146, 379, 661, 922
PpsI	GAGTC	4 cut(s)	146, 379, 661, 922
Psp6I	CCWGG	1 cut(s)	763
PspFI	CCCAGC	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	3 cut(s)	280, 879, 1054
PsrI	GAACNNNNNNTAC	4 cut(s)	343, 375, 744, 776
PsuI	RGATCY	2 cut(s)	877, 1052
RsaI	GTAC	2 cut(s)	823, 853
RsaNI	GTAC	2 cut(s)	822, 852
SaqAI	TTAA	3 cut(s)	252, 636, 1059
SatI	GCNGC	3 cut(s)	30, 1097, 1150
Sau3AI	GATC	3 cut(s)	813, 877, 1052
SchI	GAGTC	4 cut(s)	146, 380, 661, 922
ScrFI	CCNGG	2 cut(s)	119, 765
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	6 cut(s)	211, 400, 673, 703, 965, 1036
SfcI	CTRYAG	1 cut(s)	750
SmlI	CTYRAG	2 cut(s)	96, 795
SmoI	CTYRAG	2 cut(s)	96, 795
SpeI	ACTAGT	1 cut(s)	1037
Sse9I	AATT	5 cut(s)	254, 860, 939, 1071, 1155
SsiI	CCGC	7 cut(s)	30, 246, 339, 345, 971, 1097, 1152
StyD4I	CCNGG	2 cut(s)	117, 763
TaaI	ACNGT	3 cut(s)	775, 806, 826
TaiI	ACGT	1 cut(s)	1167
TaqI	TCGA	2 cut(s)	329, 915
TasI	AATT	5 cut(s)	254, 860, 939, 1071, 1155
TauI	GCSGC	2 cut(s)	32, 1099
TfiI	GAWTC	7 cut(s)	68, 212, 314, 647, 896, 974, 1064
Tru1I	TTAA	3 cut(s)	252, 636, 1059
Tru9I	TTAA	3 cut(s)	252, 636, 1059
TscAI	CASTG	1 cut(s)	831
TseFI	GTSAC	2 cut(s)	664, 925
TseI	GCWGC	1 cut(s)	1149
Tsp45I	GTSAC	2 cut(s)	664, 925
TspDTI	ATGAA	3 cut(s)	60, 120, 725
TspGWI	ACGGA	3 cut(s)	190, 250, 531
TspRI	CASTG	1 cut(s)	831
VneI	GTGCAC	1 cut(s)	776
XapI	RAATTY	3 cut(s)	254, 1071, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.