Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006128

Physical Location & Seq

Genomic Coordinates Forward (+)

8652339 .. 8656160

Gene Structure 3822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG095400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGCCGTCAGGTGCCAAGAAGAGAAAGGCCGCCAAGAAAAAGAAGGAGAAGGAGAAGGAGAATCAGACCCAAAACGGGAATTCATCAACCAGCAAAAGCAACCCTCAAGGAGACGTAAGTGATGGTGGTGAGGTTGGCTCTAAACCTCAAGCTAAAGAGTGGAGACCAGTCACTCGAGCTAAGTCCGTAGAGGGAGAATCTAGTGATGCTGAGGCTGTTCCGAAAGATGGTGGTGTTAGAATTGAGAGGGATTCGAAGGAGGGTTCCAAGAGCAACAAGCGTGCTGGGTCTGGAAAGGAATCAATTAAAGGCTCGAGTAGTAGCAGTAGCAGTGATAGGAGTAGTTCAGATGACGAGTCTCGTGTTGTTGAAAGGAGAAGGAAGGAGAAGGGTGATGCTACCGTTTCGGAGGAAAAAAAACCTGCTAGTGATTTGGTTAAGTCGGTTGATTCTTTACTAGCACAAGTGACTCACTCTCACTCTACTAATGAGGCACCAGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTTGGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTTGGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTCGGCTGAGAAGACTACAAGTTTAGTTTCAGAGAAGGCCCCTTCGGCTGAGAAGACTCCAAGTTTAGTTGCAGAGAAGGCCCCTTTGGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTTGGCTGAGAAGACTACAAGTTTAGTTGCAGAGAAGGCCCCTTTGGCTGAGAATACTGCAAGTTTAGTTGCACAGAAGGCCCCTTCGCTTGATTCTGATAAACCTGTGGTGACTGTTCACTTTACAGAAACTACTCCAGTTGACGGTCTAGTGATCTCTGGTACAGTTGTAAAACCGGCGTTGGAGAGTGGTGCAGAGAAGTCTTTAGAAACTTTGACTGATTCGCTACCAGAGAAAATCGAGAGTATAGTGTGTCCCCCGCTAATTGAGAATGGTAAGGCATCTCCGACTGTGGTGGAATCTGTATCTAAAGAAAATGGGAGTAAAGTATTGCCATCAGTAGGTGTGGTGGAATCTGTAACTAAAGAAAATGGGAGTAAAGTATTGCCATCAGTAGGTGTGGTGGAATCTGTATCTAAAGAAAATGGGAGTAAAGTATTGCCATCAGTAGGTGTCTCTCCCGCTCAAACTAGTAATGATGCTGGATCCATTAAAGATTCCGAAATTCCAGAATATTGTGAAAGCCAGCCTCTAGCTCCAGGATATAACTTCAGAATCAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

437

Amino Acids

45.53

Weight (kDa)

6.47

Isoelectric Point (pI)

42.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006128)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29530 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310 AT2G34310
fragaria_vesca	FvH4_3g06440 FvH4_3g06440
malus_domestica	MD05G1292200.v1.1 MD10G1268000.v1.1
prunus_persica	Prupe.4G073200_v2.0.a1
pyrus_communis	pycom10g22430
rosa_chinensis	RchiOBHm_Chr5g0012861
rosa_laevigata	RLG00000031962
rosa_multiflora	Rmu_sc0002365.1_g000030 Rmu_sc0010496.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063740
rosa_rugosa	Rorug05G0004700 Rorug05G0004700 Rorug05G0004800.1
rosa_samantha	Rh5AG098700 Rh5BG095400 Rh5CG107600 Rh5DG094200
rosa_wichuraiana	Rw5G008630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	2 cut(s)	11, 493
AccBSI	CCGCTC	1 cut(s)	1211
AciI	CCGC	3 cut(s)	30, 1007, 1209
AclWI	GGATC	2 cut(s)	1227, 1240
AcsI	RAATTY	2 cut(s)	79, 1251
AcuI	CTGAAG	1 cut(s)	1282
AfaI	GTAC	1 cut(s)	910
AfiI	CCNNNNNNNGG	6 cut(s)	75, 227, 890, 1088, 1142, 1196
AgsI	TTSAA	1 cut(s)	371
AhlI	ACTAGT	1 cut(s)	1217
AjnI	CCWGG	1 cut(s)	1285
AluBI	AGCT	4 cut(s)	152, 179, 500, 1283
AluI	AGCT	4 cut(s)	152, 179, 500, 1283
Alw26I	GTCTC	4 cut(s)	105, 157, 363, 1207
AlwI	GGATC	2 cut(s)	1227, 1240
Ama87I	CYCGRG	2 cut(s)	174, 313
AoxI	GGCC	9 cut(s)	27, 531, 573, 615, 657, 699, 741, 783, 825
ApoI	RAATTY	2 cut(s)	79, 1251
AspS9I	GGNCC	8 cut(s)	532, 574, 616, 658, 700, 742, 784, 826
AsuHPI	GGTGA	3 cut(s)	140, 404, 868
AsuII	TTCGAA	1 cut(s)	254
AvaI	CYCGRG	2 cut(s)	174, 313
BaeI	ACNNNNGTAYC	2 cut(s)	900, 933
BamHI	GGATCC	1 cut(s)	1232
BanI	GGYRCC	2 cut(s)	11, 493
BauI	CACGAG	1 cut(s)	360
BbsI	GAAGAC	7 cut(s)	512, 554, 596, 638, 680, 722, 764
BbvCI	CCTCAGC	1 cut(s)	210
BccI	CCATC	5 cut(s)	116, 221, 1090, 1144, 1198
BciT130I	CCWGG	1 cut(s)	1287
BcoDI	GTCTC	4 cut(s)	105, 157, 363, 1207
BcuI	ACTAGT	1 cut(s)	1217
BfaI	CTAG	6 cut(s)	201, 426, 458, 896, 1218, 1280
BfuAI	ACCTGC	1 cut(s)	430
BglI	GCCNNNNNGGC	7 cut(s)	539, 581, 623, 665, 707, 749, 791
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	1287
BmeT110I	CYCGRG	2 cut(s)	174, 313
BmgT120I	GGNCC	8 cut(s)	532, 574, 616, 658, 700, 742, 784, 826
BmrFI	CCNGG	1 cut(s)	1287
BmsI	GCATC	4 cut(s)	196, 385, 1037, 1216
BpiI	GAAGAC	7 cut(s)	512, 554, 596, 638, 680, 722, 764
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	2 cut(s)	867, 1269
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	90, 132
BsaI	GGTCTC	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 227, 890, 1088, 1142, 1196
Bse118I	RCCGGY	1 cut(s)	922
Bse1I	ACTGG	2 cut(s)	167, 884
BseBI	CCWGG	1 cut(s)	1287
BseLI	CCNNNNNNNGG	6 cut(s)	75, 227, 890, 1088, 1142, 1196
BseMII	CTCAG	9 cut(s)	201, 492, 534, 576, 618, 660, 702, 744, 786
BseNI	ACTGG	2 cut(s)	167, 884
BseYI	CCCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	960
BshFI	GGCC	9 cut(s)	29, 533, 575, 617, 659, 701, 743, 785, 827
BshNI	GGYRCC	2 cut(s)	11, 493
BsiHKCI	CYCGRG	2 cut(s)	174, 313
BsiSI	CCGG	1 cut(s)	923
BslFI	GGGAC	1 cut(s)	987
BslI	CCNNNNNNNGG	6 cut(s)	75, 227, 890, 1088, 1142, 1196
BsmAI	GTCTC	4 cut(s)	105, 157, 363, 1207
BsmBI	CGTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	987
BsnI	GGCC	9 cut(s)	29, 533, 575, 617, 659, 701, 743, 785, 827
Bso31I	GGTCTC	1 cut(s)	157
BsoBI	CYCGRG	2 cut(s)	174, 313
Bsp119I	TTCGAA	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	900, 1232
BspACI	CCGC	3 cut(s)	30, 1007, 1209
BspANI	GGCC	9 cut(s)	29, 533, 575, 617, 659, 701, 743, 785, 827
BspCNI	CTCAG	9 cut(s)	202, 493, 535, 577, 619, 661, 703, 745, 787
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	1227, 1240
BspT104I	TTCGAA	1 cut(s)	254
BspT107I	GGYRCC	2 cut(s)	11, 493
BspTNI	GGTCTC	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	1211
BsrFI	RCCGGY	1 cut(s)	922
BsrI	ACTGG	2 cut(s)	167, 884
BssAI	RCCGGY	1 cut(s)	922
BssMI	GATC	2 cut(s)	900, 1232
BssSI	CACGAG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	1287
Bst4CI	ACNGT	5 cut(s)	403, 862, 893, 913, 1039
Bst6I	CTCTTC	1 cut(s)	14
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	282, 1274
BstKTI	GATC	2 cut(s)	903, 1235
BstMAI	GTCTC	4 cut(s)	105, 157, 363, 1207
BstMBI	GATC	2 cut(s)	900, 1232
BstNI	CCWGG	1 cut(s)	1287
BstSCI	CCNGG	1 cut(s)	1285
BstV2I	GAAGAC	7 cut(s)	512, 554, 596, 638, 680, 722, 764
BstX2I	RGATCY	1 cut(s)	1232
BstYI	RGATCY	1 cut(s)	1232
BsuRI	GGCC	9 cut(s)	29, 533, 575, 617, 659, 701, 743, 785, 827
BtsI	GCAGTG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	337
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	282, 1274
Cfr10I	RCCGGY	1 cut(s)	922
Cfr13I	GGNCC	8 cut(s)	532, 574, 616, 658, 700, 742, 784, 826
Csp6I	GTAC	1 cut(s)	909
CviAII	CATG	1 cut(s)	1311
CviQI	GTAC	1 cut(s)	909
DpnI	GATC	2 cut(s)	902, 1234
DpnII	GATC	2 cut(s)	900, 1232
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	1282
Eco88I	CYCGRG	2 cut(s)	174, 313
EcoO109I	RGGNCCY	8 cut(s)	532, 574, 616, 658, 700, 742, 784, 826
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	1285
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	1 cut(s)	1314
FaiI	YATR	3 cut(s)	995, 1293, 1312
FaqI	GGGAC	1 cut(s)	987
FatI	CATG	1 cut(s)	1310
FauI	CCCGC	2 cut(s)	1014, 1216
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	6 cut(s)	201, 426, 458, 896, 1218, 1280
GluI	GCNGC	1 cut(s)	30
GsaI	CCCAGC	1 cut(s)	288
GsuI	CTGGAG	2 cut(s)	867, 1269
HaeIII	GGCC	9 cut(s)	29, 533, 575, 617, 659, 701, 743, 785, 827
HapII	CCGG	1 cut(s)	923
Hin1II	CATG	1 cut(s)	1314
HincII	GTYRAC	1 cut(s)	889
HindII	GTYRAC	1 cut(s)	889
HpaII	CCGG	1 cut(s)	923
HphI	GGTGA	3 cut(s)	140, 404, 868
Hpy166II	GTNNAC	2 cut(s)	865, 889
Hpy188I	TCNGA	9 cut(s)	66, 222, 349, 409, 652, 844, 1035, 1249, 1301
Hpy188III	TCNNGA	3 cut(s)	291, 988, 1256
Hpy8I	GTNNAC	2 cut(s)	865, 889
HpyCH4III	ACNGT	5 cut(s)	403, 862, 893, 913, 1039
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	9 cut(s)	524, 566, 608, 692, 734, 776, 806, 818, 941
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	1314
Kzo9I	GATC	2 cut(s)	900, 1232
LmnI	GCTCC	1 cut(s)	1288
LweI	GCATC	4 cut(s)	196, 385, 1037, 1216
MaeI	CTAG	6 cut(s)	201, 426, 458, 896, 1218, 1280
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	4 cut(s)	169, 466, 856, 1105
MalI	GATC	2 cut(s)	902, 1234
MbiI	CCGCTC	1 cut(s)	1211
MboI	GATC	2 cut(s)	900, 1232
MboII	GAAGA	8 cut(s)	31, 517, 559, 601, 643, 685, 727, 769
MflI	RGATCY	1 cut(s)	1232
MluCI	AATT	5 cut(s)	79, 240, 303, 1011, 1251
MlyI	GAGTC	3 cut(s)	365, 463, 670
MmeI	TCCRAC	2 cut(s)	909, 1058
MseI	TTAA	3 cut(s)	306, 438, 1239
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	923
MspR9I	CCNGG	1 cut(s)	1287
MvaI	CCWGG	1 cut(s)	1287
NdeII	GATC	2 cut(s)	900, 1232
NlaIII	CATG	1 cut(s)	1314
NmuCI	GTSAC	3 cut(s)	169, 466, 856
NspV	TTCGAA	1 cut(s)	254
PaeR7I	CTCGAG	2 cut(s)	174, 313
PfoI	TCCNGGA	1 cut(s)	1285
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	3 cut(s)	364, 463, 670
PpsI	GAGTC	3 cut(s)	364, 463, 670
Psp6I	CCWGG	1 cut(s)	1285
PspFI	CCCAGC	1 cut(s)	284
PspGI	CCWGG	1 cut(s)	1285
PspPI	GGNCC	8 cut(s)	532, 574, 616, 658, 700, 742, 784, 826
PspXI	VCTCGAGB	2 cut(s)	174, 313
PsuI	RGATCY	1 cut(s)	1232
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	910
RsaNI	GTAC	1 cut(s)	909
SaqAI	TTAA	3 cut(s)	306, 438, 1239
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	900, 1232
Sau96I	GGNCC	8 cut(s)	532, 574, 616, 658, 700, 742, 784, 826
SchI	GAGTC	3 cut(s)	365, 463, 670
ScrFI	CCNGG	1 cut(s)	1287
SfaNI	GCATC	4 cut(s)	196, 385, 1037, 1216
Sfr274I	CTCGAG	2 cut(s)	174, 313
SfuI	TTCGAA	1 cut(s)	254
SlaI	CTCGAG	2 cut(s)	174, 313
SmlI	CTYRAG	4 cut(s)	105, 147, 174, 313
SmoI	CTYRAG	4 cut(s)	105, 147, 174, 313
SpeI	ACTAGT	1 cut(s)	1217
Sse9I	AATT	5 cut(s)	79, 240, 303, 1011, 1251
SsiI	CCGC	3 cut(s)	30, 1007, 1209
SspI	AATATT	1 cut(s)	1262
SspMI	CTAG	6 cut(s)	201, 426, 458, 896, 1218, 1280
StyD4I	CCNGG	1 cut(s)	1285
TaaI	ACNGT	5 cut(s)	403, 862, 893, 913, 1039
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	4 cut(s)	175, 254, 314, 987
TasI	AATT	5 cut(s)	79, 240, 303, 1011, 1251
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	3 cut(s)	306, 438, 1239
Tru9I	TTAA	3 cut(s)	306, 438, 1239
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	3 cut(s)	169, 466, 856
Tsp45I	GTSAC	3 cut(s)	169, 466, 856
TspDTI	ATGAA	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	2 cut(s)	79, 1251
XhoI	CTCGAG	2 cut(s)	174, 313
XspI	CTAG	6 cut(s)	201, 426, 458, 896, 1218, 1280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.