Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013345

Physical Location & Seq

Genomic Coordinates Forward (+)

10338443 .. 10339146

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCAGAAGCCACAATCCCATACAACGCAGCAACAACAATCTGTGCAGACTCCGCTGCAACATCAGACGTTAGCTTCTCATCTCTATCCCTTGGTGGAAAATTTAAAAGATGTGACTGAATCTAGAGCACGAGATCAGAACTCTGATGCCCTGTATGTTGATGTACAGAAGCAAAATCTAGAAGAAAGTGAACAATTGCTTCAACAAAGAATGGAATTGATTGAGGAATACAAGAAATCTGTCGAAGAGATTGTGAAAAAAGAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med9

Protein Analysis

89

Amino Acids

10.46

Weight (kDa)

5.1

Isoelectric Point (pI)

66.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29580 AT1G55080 AT1G55080
fragaria_vesca	FvH4_6g33500
malus_domestica	MD09G1192700.v1.1
prunus_persica	Prupe.3G049000_v2.0.a1
pyrus_communis	pycom09g10920
rosa_chinensis	RchiOBHm_Chr2g0143361
rosa_laevigata	RLG00000020032
rosa_multiflora	Rmu_sc0003507.1_g000018 Rmu_sc0024801.1_g000003
rosa_roxburghii	Rroxscaffold_2G00101930
rosa_rugosa	Rorug02G0380900
rosa_samantha	Rh2AG433800 Rh2BG441800 Rh2CG419500 Rh2DG451900
rosa_wichuraiana	Rw2G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	28, 55
ApoI	RAATTY	1 cut(s)	100
BauI	CACGAG	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	40, 42
BfaI	CTAG	2 cut(s)	123, 179
BisI	GCNGC	2 cut(s)	29, 56
BlsI	GCNGC	2 cut(s)	30, 57
BmsI	GCATC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	40, 42
BsgI	GTGCAG	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	53
BsrGI	TGTACA	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	133
BssSI	CACGAG	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	240
BstAUI	TGTACA	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	40, 42
Csp6I	GTAC	1 cut(s)	164
CviJI	RGCY	3 cut(s)	10, 74, 265
CviKI_1	RGCY	3 cut(s)	10, 74, 265
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
DraI	TTTAAA	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaiI	YATR	2 cut(s)	21, 156
Fnu4HI	GCNGC	2 cut(s)	29, 56
Fsp4HI	GCNGC	2 cut(s)	29, 56
FspBI	CTAG	2 cut(s)	123, 179
GluI	GCNGC	2 cut(s)	29, 56
HinfI	GANTC	2 cut(s)	49, 119
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	3 cut(s)	66, 138, 145
Hpy188III	TCNNGA	2 cut(s)	123, 179
Hpy8I	GTNNAC	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	4, 46, 58
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	1 cut(s)	164
Lsp1109I	GCAGC	2 cut(s)	40, 42
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	123, 179
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	194, 257
MfeI	CAATTG	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	3 cut(s)	100, 194, 215
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	1 cut(s)	217
MseI	TTAA	1 cut(s)	104
MspA1I	CMGCKG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	30, 57
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	2 cut(s)	29, 56
Sau3AI	GATC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	2 cut(s)	71, 76
SfaNI	GCATC	1 cut(s)	136
SgeI	CNNG	7 cut(s)	103, 135, 141, 143, 163, 191, 244
Sse9I	AATT	3 cut(s)	100, 194, 215
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	2 cut(s)	123, 179
StyI	CCWWGG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	1 cut(s)	243
TasI	AATT	3 cut(s)	100, 194, 215
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	2 cut(s)	28, 55
Tsp45I	GTSAC	1 cut(s)	112
XapI	RAATTY	1 cut(s)	100
XbaI	TCTAGA	2 cut(s)	122, 178
XspI	CTAG	2 cut(s)	123, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.