Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013345

Physical Location & Seq

Genomic Coordinates Forward (+)

17185042 .. 17186804

Gene Structure 1763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1192700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCGAACCGTACCAGGTTCCTTCTTGTTCGATTCAATCTCTGCCGTCTGCAGTGCACAAATCAAAGTTCAAACCTTTTTCCATTTCCGGAGAATCTGTACGGCGGAGAGAGAATGGAACATTCGTACTCCGGTGGCGGCGGCGGAGGAGGAGGAAGCTGGAATATGATTCCAAGCGTGCCGACTCACAGTAACCCCTCTACGCCGTCGAGCCAGGACCATATGTACCTCCATCATCAGCAGCAGCAACAGCAACAGCAGTTTCAACAGCAGCAGCAGCGTCTTCTTCTTCAACAACAACAGCAGCAGCAGCAACAGCAACAACAGCAACAACAGCAGCAGCAGCATCACCAGTCGCTCGCCTCACATTTCCATCTCTTCCATTTGGTGGAGAAATTAGCTGACACGATCGAGAATGGAACTAGGGATCAGCAGTCTGATGCATTGGTTAGCGATCTGAAGAACCATTTTGAGAAGTGCCAGCAGCTGCTCAACTCCATATCTGGATCGATCGGCACCAAGGCCATGACGGTTGAGGGACAGAAGCGAAAGTTGGAAGAAAGTGAGCAATCGTTGCATCAGAGGAGGTGTGGACTTGATGACCAAGTACAGAAAATCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med9

Protein Analysis

208

Amino Acids

23.83

Weight (kDa)

7.2

Isoelectric Point (pI)

72.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29580 AT1G55080 AT1G55080
fragaria_vesca	FvH4_6g33500
malus_domestica	MD09G1192700.v1.1
prunus_persica	Prupe.3G049000_v2.0.a1
pyrus_communis	pycom09g10920
rosa_chinensis	RchiOBHm_Chr2g0143361
rosa_laevigata	RLG00000020032
rosa_multiflora	Rmu_sc0003507.1_g000018 Rmu_sc0024801.1_g000003
rosa_roxburghii	Rroxscaffold_2G00101930
rosa_rugosa	Rorug02G0380900
rosa_samantha	Rh2AG433800 Rh2BG441800 Rh2CG419500 Rh2DG451900
rosa_wichuraiana	Rw2G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	388
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	4 cut(s)	105, 138, 141, 144
AclWI	GGATC	2 cut(s)	435, 514
AcuI	CTGAAG	1 cut(s)	479
AfaI	GTAC	5 cut(s)	13, 101, 128, 227, 609
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	4 cut(s)	37, 72, 266, 293
AjnI	CCWGG	2 cut(s)	14, 213
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	3 cut(s)	159, 401, 487
AluI	AGCT	3 cut(s)	159, 401, 487
Alw21I	GWGCWC	1 cut(s)	59
Alw44I	GTGCAC	1 cut(s)	55
AlwI	GGATC	2 cut(s)	435, 514
AlwNI	CAGNNNCTG	1 cut(s)	487
Aor13HI	TCCGGA	1 cut(s)	88
AoxI	GGCC	1 cut(s)	522
ApaLI	GTGCAC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	59
BccI	CCATC	2 cut(s)	240, 381
BceAI	ACGGC	3 cut(s)	30, 118, 190
BciT130I	CCWGG	2 cut(s)	16, 215
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	16, 215
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	20, 517
BmrFI	CCNGG	2 cut(s)	16, 215
BmsI	GCATC	3 cut(s)	355, 430, 586
BpiI	GAAGAC	1 cut(s)	275
Bsa29I	ATCGAT	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	2 cut(s)	88, 131
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	352
BseAI	TCCGGA	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	16, 215
BseCI	ATCGAT	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	3 cut(s)	162, 165, 598
BseSI	GKGCMC	1 cut(s)	59
Bsh1285I	CGRYCG	2 cut(s)	411, 513
BshFI	GGCC	1 cut(s)	524
BshNI	GGYRCC	1 cut(s)	515
BshVI	ATCGAT	1 cut(s)	509
BsiEI	CGRYCG	2 cut(s)	411, 513
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	89, 132
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp13I	TCCGGA	1 cut(s)	88
Bsp143I	GATC	5 cut(s)	408, 427, 454, 506, 510
BspACI	CCGC	4 cut(s)	105, 138, 141, 144
BspANI	GGCC	1 cut(s)	524
BspDI	ATCGAT	1 cut(s)	509
BspEI	TCCGGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	20, 517
BspMAI	CTGCAG	1 cut(s)	54
BspPI	GGATC	2 cut(s)	435, 514
BspT107I	GGYRCC	1 cut(s)	515
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	5 cut(s)	408, 427, 454, 506, 510
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	16, 215
Bst4CI	ACNGT	3 cut(s)	11, 191, 532
Bst6I	CTCTTC	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	574
BstC8I	GCNNGC	3 cut(s)	179, 360, 482
BstKTI	GATC	5 cut(s)	411, 430, 457, 509, 513
BstMBI	GATC	5 cut(s)	408, 427, 454, 506, 510
BstMCI	CGRYCG	2 cut(s)	411, 513
BstMWI	GCNNNNNNNGC	8 cut(s)	250, 277, 310, 316, 325, 334, 343, 574
BstNI	CCWGG	2 cut(s)	16, 215
BstSCI	CCNGG	2 cut(s)	14, 213
BstSFI	CTRYAG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	509
BsuRI	GGCC	1 cut(s)	524
BsuTUI	ATCGAT	1 cut(s)	509
BtsI	GCAGTG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	3 cut(s)	179, 360, 482
CaiI	CAGNNNCTG	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	217
ClaI	ATCGAT	1 cut(s)	509
CseI	GACGC	1 cut(s)	269
CsiI	ACCWGGT	1 cut(s)	14
Csp6I	GTAC	5 cut(s)	12, 100, 127, 226, 608
CviAII	CATG	1 cut(s)	526
CviJI	RGCY	5 cut(s)	159, 213, 401, 487, 524
CviKI_1	RGCY	5 cut(s)	159, 213, 401, 487, 524
CviQI	GTAC	5 cut(s)	12, 100, 127, 226, 608
DpnI	GATC	5 cut(s)	410, 429, 456, 508, 512
DpnII	GATC	5 cut(s)	408, 427, 454, 506, 510
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
EciI	GGCGGA	2 cut(s)	120, 159
Eco130I	CCWWGG	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	479
EcoRII	CCWGG	2 cut(s)	14, 213
EcoT14I	CCWWGG	1 cut(s)	519
EcoT22I	ATGCAT	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	1 cut(s)	529
FaiI	YATR	5 cut(s)	167, 222, 224, 500, 527
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	1 cut(s)	525
FauNDI	CATATG	1 cut(s)	222
FspBI	CTAG	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	524
HapII	CCGG	2 cut(s)	89, 132
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	529
HinfI	GANTC	4 cut(s)	33, 94, 169, 184
HpaII	CCGG	2 cut(s)	89, 132
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	2 cut(s)	57, 593
Hpy188I	TCNGA	3 cut(s)	439, 459, 582
Hpy188III	TCNNGA	3 cut(s)	89, 412, 504
Hpy8I	GTNNAC	2 cut(s)	57, 593
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	3 cut(s)	11, 191, 532
HpyCH4V	TGCA	4 cut(s)	52, 57, 443, 577
HpyF10VI	GCNNNNNNNGC	8 cut(s)	250, 277, 310, 316, 325, 334, 343, 574
Hsp92II	CATG	1 cut(s)	529
Kpn2I	TCCGGA	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	408, 427, 454, 506, 510
LpnPI	CCDG	9 cut(s)	28, 102, 145, 145, 200, 227, 365, 489, 494
LweI	GCATC	3 cut(s)	355, 430, 586
MabI	ACCWGGT	1 cut(s)	14
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	5 cut(s)	410, 429, 456, 508, 512
MboI	GATC	5 cut(s)	408, 427, 454, 506, 510
MboII	GAAGA	6 cut(s)	275, 278, 281, 370, 472, 569
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	9 cut(s)	140, 143, 146, 208, 239, 373, 529, 576, 579
Mph1103I	ATGCAT	1 cut(s)	445
MroI	TCCGGA	1 cut(s)	88
MspA1I	CMGCKG	1 cut(s)	487
MspI	CCGG	2 cut(s)	89, 132
MspR9I	CCNGG	2 cut(s)	16, 215
MvaI	CCWGG	2 cut(s)	16, 215
MwoI	GCNNNNNNNGC	8 cut(s)	250, 277, 310, 316, 325, 334, 343, 574
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	5 cut(s)	408, 427, 454, 506, 510
NlaIII	CATG	1 cut(s)	529
NlaIV	GGNNCC	2 cut(s)	20, 517
NsiI	ATGCAT	1 cut(s)	445
PfeI	GAWTC	3 cut(s)	33, 94, 169
PflMI	CCANNNNNTGG	1 cut(s)	388
Ple19I	CGATCG	2 cut(s)	411, 513
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	14, 213
PspGI	CCWGG	2 cut(s)	14, 213
PspN4I	GGNNCC	2 cut(s)	20, 517
PspPI	GGNCC	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	487
PvuI	CGATCG	2 cut(s)	411, 513
PvuII	CAGCTG	1 cut(s)	487
RsaI	GTAC	5 cut(s)	13, 101, 128, 227, 609
RsaNI	GTAC	5 cut(s)	12, 100, 127, 226, 608
Sau3AI	GATC	5 cut(s)	408, 427, 454, 506, 510
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	16, 215
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	7 cut(s)	20, 78, 161, 231, 403, 489, 590
SexAI	ACCWGGT	1 cut(s)	14
SfaNI	GCATC	3 cut(s)	355, 430, 586
SfcI	CTRYAG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	217
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	4 cut(s)	105, 138, 141, 144
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	14, 213
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	3 cut(s)	11, 191, 532
TaqI	TCGA	5 cut(s)	5, 31, 209, 411, 509
TasI	AATT	1 cut(s)	395
TatI	WGTACW	1 cut(s)	607
TauI	GCSGC	2 cut(s)	141, 144
TfiI	GAWTC	3 cut(s)	33, 94, 169
TscAI	CASTG	1 cut(s)	59
TspRI	CASTG	1 cut(s)	59
Van91I	CCANNNNNTGG	1 cut(s)	388
VneI	GTGCAC	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	217
XspI	CTAG	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.