Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013345

Physical Location & Seq

Genomic Coordinates Reverse (-)

20552905 .. 20554272

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGATCAATTCTCAGGAGGAGGAGGTAATTGGTCGATGATCCCAAACGTGCAGGCGCAAGGTAACTTCGGTACACCGACGAATCATGACCAGCAACTATTCCTCCAGCAACAACAATTACAACAACAACAACAACAACAACAACAACAACAGTTTCATCTTCAACAACAACAACAGACGCAGCAGCAACAACAACAATTCCAGCCACAACAACAACAAGAGATGCAACAATATCAGCAATTCCAACAACAGCAACACTTCATCCAACAACAGCAATTCCAACAACAACAACGGTTGTTACAATCTCCTCCTCTTCAGCCACAGTCGTTACAATCACCTCCGCCGCAACAGACGATGGTTCACACGCCTCAATCTATGATGCATACACCGCAGCAACAACAACAGTTGGTTCAAACTCCGGTGCAGACTCCTCAACAGCATCAGTCTTTAGCTTCTCATTTCCATCTCTATCCGATGGTGGAGAAATTAGCTGATGTGATCGAAAATGGAACACGAGATCAGAATTCTGACGCCCTGGTGAATGAATTGAATAGCCATTTCGACAAGTGTCAACAGTTGCTGAATTCGATTTCAGGATCACTAGGATCTAAAACTATGACTGTTGATGGCCAAAAGAGAAATGTTGAAGAAAGTGAGCAATTGCTTCAACAGAGAAGGGATTTGATTGTGGAGTATAGGAAATCTATTGAAGAGATTGTGACAATGGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med9

Protein Analysis

244

Amino Acids

28.59

Weight (kDa)

5.6

Isoelectric Point (pI)

83.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29580 AT1G55080 AT1G55080
fragaria_vesca	FvH4_6g33500
malus_domestica	MD09G1192700.v1.1
prunus_persica	Prupe.3G049000_v2.0.a1
pyrus_communis	pycom09g10920
rosa_chinensis	RchiOBHm_Chr2g0143361
rosa_laevigata	RLG00000020032
rosa_multiflora	Rmu_sc0003507.1_g000018 Rmu_sc0024801.1_g000003
rosa_roxburghii	Rroxscaffold_2G00101930
rosa_rugosa	Rorug02G0380900
rosa_samantha	Rh2AG433800 Rh2BG441800 Rh2CG419500 Rh2DG451900
rosa_wichuraiana	Rw2G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	341, 344, 389
AclWI	GGATC	4 cut(s)	12, 34, 604, 613
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	2 cut(s)	523, 583
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	1 cut(s)	73
AgsI	TTSAA	6 cut(s)	164, 413, 550, 647, 668, 710
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	2 cut(s)	452, 491
AluI	AGCT	2 cut(s)	452, 491
AlwI	GGATC	4 cut(s)	12, 34, 604, 613
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	1 cut(s)	628
ApeKI	GCWGC	3 cut(s)	181, 184, 391
ApoI	RAATTY	2 cut(s)	523, 583
AspLEI	GCGC	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	327, 550
BalI	TGGCCA	1 cut(s)	630
BauI	CACGAG	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	193, 196, 403
BccI	CCATC	4 cut(s)	349, 469, 471, 620
BciT130I	CCWGG	1 cut(s)	536
BfaI	CTAG	1 cut(s)	602
BisI	GCNGC	4 cut(s)	182, 185, 344, 392
BlsI	GCNGC	4 cut(s)	183, 186, 345, 393
Bme1390I	CCNGG	1 cut(s)	536
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	3 cut(s)	213, 369, 448
BoxI	GACNNNNGTC	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	27
BseRI	GAGGAG	5 cut(s)	33, 36, 297, 300, 420
BseXI	GCAGC	3 cut(s)	193, 196, 403
BsgI	GTGCAG	2 cut(s)	71, 443
BshFI	GGCC	1 cut(s)	630
BsiSI	CCGG	1 cut(s)	419
BsnI	GGCC	1 cut(s)	630
Bsp143I	GATC	6 cut(s)	4, 39, 498, 517, 596, 605
BspACI	CCGC	3 cut(s)	341, 344, 389
BspANI	GGCC	1 cut(s)	630
BspCNI	CTCAG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	85
BspPI	GGATC	4 cut(s)	12, 34, 604, 613
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	6 cut(s)	4, 39, 498, 517, 596, 605
BssNI	GRCGYC	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	513
Bst2BI	CACGAG	1 cut(s)	513
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	6 cut(s)	153, 294, 324, 405, 576, 622
Bst6I	CTCTTC	2 cut(s)	318, 705
BstACI	GRCGYC	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	6 cut(s)	7, 42, 501, 520, 599, 608
BstMBI	GATC	6 cut(s)	4, 39, 498, 517, 596, 605
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	536
BstPAI	GACNNNNGTC	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	534
BstV1I	GCAGC	3 cut(s)	193, 196, 403
BstX2I	RGATCY	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	580
CciI	TCATGA	1 cut(s)	85
CfoI	GCGC	1 cut(s)	58
CseI	GACGC	2 cut(s)	187, 539
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	6 cut(s)	205, 319, 452, 491, 555, 630
CviKI_1	RGCY	6 cut(s)	205, 319, 452, 491, 555, 630
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	6 cut(s)	6, 41, 500, 519, 598, 607
DpnII	GATC	6 cut(s)	4, 39, 498, 517, 596, 605
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	2 cut(s)	318, 705
EarI	CTCTTC	2 cut(s)	318, 705
EciI	GGCGGA	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	299
EcoRI	GAATTC	2 cut(s)	523, 583
EcoRII	CCWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	384
FaeI	CATG	1 cut(s)	89
FaiI	YATR	5 cut(s)	87, 377, 384, 617, 696
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	4 cut(s)	182, 185, 344, 392
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	4 cut(s)	182, 185, 344, 392
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	4 cut(s)	182, 185, 344, 392
GsuI	CTGGAG	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	630
HapII	CCGG	1 cut(s)	419
HgaI	GACGC	2 cut(s)	187, 539
HhaI	GCGC	1 cut(s)	58
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	1 cut(s)	572
HindII	GTYRAC	1 cut(s)	572
HinfI	GANTC	2 cut(s)	82, 427
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	2 cut(s)	327, 550
Hpy166II	GTNNAC	3 cut(s)	74, 361, 572
Hpy188I	TCNGA	3 cut(s)	474, 522, 529
Hpy188III	TCNNGA	3 cut(s)	15, 86, 594
Hpy8I	GTNNAC	3 cut(s)	74, 361, 572
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	669
HpyCH4III	ACNGT	6 cut(s)	153, 294, 324, 405, 576, 622
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	52, 226, 382, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	6 cut(s)	4, 39, 498, 517, 596, 605
LmnI	GCTCC	1 cut(s)	727
LpnPI	CCDG	8 cut(s)	38, 104, 119, 215, 432, 521, 548, 579
Lsp1109I	GCAGC	3 cut(s)	193, 196, 403
LweI	GCATC	3 cut(s)	213, 369, 448
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	4 cut(s)	62, 297, 327, 718
MalI	GATC	6 cut(s)	6, 41, 500, 519, 598, 607
MboI	GATC	6 cut(s)	4, 39, 498, 517, 596, 605
MboII	GAAGA	4 cut(s)	152, 305, 659, 722
MfeI	CAATTG	1 cut(s)	659
MflI	RGATCY	1 cut(s)	605
MlsI	TGGCCA	1 cut(s)	630
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	3 cut(s)	268, 289, 304
MnlI	CCTC	9 cut(s)	11, 14, 17, 113, 318, 321, 348, 378, 441
Mox20I	TGGCCA	1 cut(s)	630
Mph1103I	ATGCAT	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	630
Msp20I	TGGCCA	1 cut(s)	630
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	659
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	1 cut(s)	388
NdeII	GATC	6 cut(s)	4, 39, 498, 517, 596, 605
NlaIII	CATG	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	718
NsiI	ATGCAT	1 cut(s)	384
PagI	TCATGA	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	183, 186, 345, 393
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PshAI	GACNNNNGTC	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	605
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SatI	GCNGC	4 cut(s)	182, 185, 344, 392
Sau3AI	GATC	6 cut(s)	4, 39, 498, 517, 596, 605
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	536
SetI	ASST	6 cut(s)	28, 51, 64, 340, 454, 493
SfaNI	GCATC	3 cut(s)	213, 369, 448
SsiI	CCGC	3 cut(s)	341, 344, 389
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	534
TaaI	ACNGT	6 cut(s)	153, 294, 324, 405, 576, 622
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	35, 501, 561, 587
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	3 cut(s)	181, 184, 391
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	3 cut(s)	146, 250, 558
XapI	RAATTY	2 cut(s)	523, 583
XspI	CTAG	1 cut(s)	602
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.