mediator of RNA polymerase II transcription
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G29580 AT1G55080 AT1G55080 |
| fragaria_vesca | FvH4_6g33500 |
| malus_domestica | MD09G1192700.v1.1 |
| prunus_persica | Prupe.3G049000_v2.0.a1 |
| pyrus_communis | pycom09g10920 |
| rosa_chinensis | RchiOBHm_Chr2g0143361 |
| rosa_laevigata | RLG00000020032 |
| rosa_multiflora | Rmu_sc0003507.1_g000018 Rmu_sc0024801.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00101930 |
| rosa_rugosa | Rorug02G0380900 |
| rosa_samantha | Rh2AG433800 Rh2BG441800 Rh2CG419500 Rh2DG451900 |
| rosa_wichuraiana | Rw2G035370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 125 |
| AciI | CCGC | 1 cut(s) | 205 |
| AclWI | GGATC | 3 cut(s) | 57, 123, 136 |
| AcsI | RAATTY | 1 cut(s) | 263 |
| AfaI | GTAC | 1 cut(s) | 296 |
| AgsI | TTSAA | 3 cut(s) | 82, 115, 179 |
| AhlI | ACTAGT | 1 cut(s) | 304 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 107, 139 |
| AluBI | AGCT | 3 cut(s) | 175, 259, 278 |
| AluI | AGCT | 3 cut(s) | 175, 259, 278 |
| AlwI | GGATC | 3 cut(s) | 57, 123, 136 |
| Aor13HI | TCCGGA | 1 cut(s) | 125 |
| ApoI | RAATTY | 1 cut(s) | 263 |
| AspS9I | GGNCC | 1 cut(s) | 211 |
| AsuHPI | GGTGA | 1 cut(s) | 127 |
| AvaII | GGWCC | 1 cut(s) | 211 |
| BamHI | GGATCC | 1 cut(s) | 128 |
| BccI | CCATC | 1 cut(s) | 140 |
| BcuI | ACTAGT | 1 cut(s) | 304 |
| BfaI | CTAG | 1 cut(s) | 305 |
| BfmI | CTRYAG | 1 cut(s) | 235 |
| Bme18I | GGWCC | 1 cut(s) | 211 |
| BmgT120I | GGNCC | 1 cut(s) | 211 |
| BmiI | GGNNCC | 2 cut(s) | 130, 212 |
| BmsI | GCATC | 1 cut(s) | 52 |
| BsaJI | CCNNGG | 1 cut(s) | 141 |
| BsaWI | WCCGGW | 1 cut(s) | 125 |
| BseAI | TCCGGA | 1 cut(s) | 125 |
| BseDI | CCNNGG | 1 cut(s) | 141 |
| BseGI | GGATG | 1 cut(s) | 67 |
| BsiSI | CCGG | 1 cut(s) | 126 |
| BslFI | GGGAC | 3 cut(s) | 55, 174, 224 |
| BsmFI | GGGAC | 3 cut(s) | 55, 174, 224 |
| Bsp13I | TCCGGA | 1 cut(s) | 125 |
| Bsp143I | GATC | 2 cut(s) | 49, 128 |
| BspACI | CCGC | 1 cut(s) | 205 |
| BspEI | TCCGGA | 1 cut(s) | 125 |
| BspLI | GGNNCC | 2 cut(s) | 130, 212 |
| BspPI | GGATC | 3 cut(s) | 57, 123, 136 |
| BssECI | CCNNGG | 1 cut(s) | 141 |
| BssMI | GATC | 2 cut(s) | 49, 128 |
| BssT1I | CCWWGG | 1 cut(s) | 141 |
| Bst4CI | ACNGT | 1 cut(s) | 154 |
| Bst6I | CTCTTC | 1 cut(s) | 174 |
| BstC8I | GCNNGC | 2 cut(s) | 104, 276 |
| BstF5I | GGATG | 1 cut(s) | 67 |
| BstKTI | GATC | 2 cut(s) | 52, 131 |
| BstMBI | GATC | 2 cut(s) | 49, 128 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 71 |
| BstSFI | CTRYAG | 1 cut(s) | 235 |
| BstX2I | RGATCY | 1 cut(s) | 128 |
| BstYI | RGATCY | 1 cut(s) | 128 |
| BtsCI | GGATG | 1 cut(s) | 67 |
| Cac8I | GCNNGC | 2 cut(s) | 104, 276 |
| Cfr13I | GGNCC | 1 cut(s) | 211 |
| Csp6I | GTAC | 1 cut(s) | 295 |
| CviJI | RGCY | 4 cut(s) | 146, 175, 259, 278 |
| CviKI_1 | RGCY | 4 cut(s) | 146, 175, 259, 278 |
| CviQI | GTAC | 1 cut(s) | 295 |
| DpnI | GATC | 2 cut(s) | 51, 130 |
| DpnII | GATC | 2 cut(s) | 49, 128 |
| Eam1104I | CTCTTC | 1 cut(s) | 174 |
| EarI | CTCTTC | 1 cut(s) | 174 |
| Eco130I | CCWWGG | 1 cut(s) | 141 |
| Eco47I | GGWCC | 1 cut(s) | 211 |
| EcoO109I | RGGNCCY | 1 cut(s) | 211 |
| EcoT14I | CCWWGG | 1 cut(s) | 141 |
| EcoT22I | ATGCAT | 1 cut(s) | 67 |
| ErhI | CCWWGG | 1 cut(s) | 141 |
| FaiI | YATR | 2 cut(s) | 122, 149 |
| FaqI | GGGAC | 3 cut(s) | 55, 174, 224 |
| FokI | GGATG | 1 cut(s) | 74 |
| FspBI | CTAG | 1 cut(s) | 305 |
| HapII | CCGG | 1 cut(s) | 126 |
| HindIII | AAGCTT | 1 cut(s) | 173 |
| HinfI | GANTC | 1 cut(s) | 26 |
| HpaII | CCGG | 1 cut(s) | 126 |
| HphI | GGTGA | 1 cut(s) | 127 |
| Hpy188I | TCNGA | 4 cut(s) | 25, 61, 269, 332 |
| Hpy188III | TCNNGA | 1 cut(s) | 126 |
| HpyAV | CCTTC | 1 cut(s) | 264 |
| HpyCH4III | ACNGT | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 4 cut(s) | 65, 248, 254, 315 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 71 |
| Kpn2I | TCCGGA | 1 cut(s) | 125 |
| Kzo9I | GATC | 2 cut(s) | 49, 128 |
| LpnPI | CCDG | 5 cut(s) | 116, 139, 227, 247, 264 |
| LweI | GCATC | 1 cut(s) | 52 |
| MaeI | CTAG | 1 cut(s) | 305 |
| MalI | GATC | 2 cut(s) | 51, 130 |
| MboI | GATC | 2 cut(s) | 49, 128 |
| MboII | GAAGA | 3 cut(s) | 178, 181, 191 |
| MfeI | CAATTG | 1 cut(s) | 191 |
| MflI | RGATCY | 1 cut(s) | 128 |
| MluCI | AATT | 3 cut(s) | 191, 227, 263 |
| MmeI | TCCRAC | 1 cut(s) | 39 |
| MnlI | CCTC | 3 cut(s) | 39, 151, 201 |
| Mph1103I | ATGCAT | 1 cut(s) | 67 |
| MroI | TCCGGA | 1 cut(s) | 125 |
| MseI | TTAA | 1 cut(s) | 197 |
| MspA1I | CMGCKG | 2 cut(s) | 205, 259 |
| MspI | CCGG | 1 cut(s) | 126 |
| MunI | CAATTG | 1 cut(s) | 191 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 71 |
| NdeII | GATC | 2 cut(s) | 49, 128 |
| NlaIV | GGNNCC | 2 cut(s) | 130, 212 |
| NsiI | ATGCAT | 1 cut(s) | 67 |
| PfeI | GAWTC | 1 cut(s) | 26 |
| PpuMI | RGGWCCY | 1 cut(s) | 211 |
| Psp5II | RGGWCCY | 1 cut(s) | 211 |
| PspN4I | GGNNCC | 2 cut(s) | 130, 212 |
| PspPI | GGNCC | 1 cut(s) | 211 |
| PspPPI | RGGWCCY | 1 cut(s) | 211 |
| PsuI | RGATCY | 1 cut(s) | 128 |
| PvuII | CAGCTG | 1 cut(s) | 259 |
| RsaI | GTAC | 1 cut(s) | 296 |
| RsaNI | GTAC | 1 cut(s) | 295 |
| SaqAI | TTAA | 1 cut(s) | 197 |
| Sau3AI | GATC | 2 cut(s) | 49, 128 |
| Sau96I | GGNCC | 1 cut(s) | 211 |
| SetI | ASST | 4 cut(s) | 177, 216, 261, 280 |
| SfaNI | GCATC | 1 cut(s) | 52 |
| SfcI | CTRYAG | 1 cut(s) | 235 |
| SinI | GGWCC | 1 cut(s) | 211 |
| SpeI | ACTAGT | 1 cut(s) | 304 |
| Sse9I | AATT | 3 cut(s) | 191, 227, 263 |
| SsiI | CCGC | 1 cut(s) | 205 |
| SspMI | CTAG | 1 cut(s) | 305 |
| StyI | CCWWGG | 1 cut(s) | 141 |
| TaaI | ACNGT | 1 cut(s) | 154 |
| TaqI | TCGA | 2 cut(s) | 29, 93 |
| TasI | AATT | 3 cut(s) | 191, 227, 263 |
| TfiI | GAWTC | 1 cut(s) | 26 |
| Tru1I | TTAA | 1 cut(s) | 197 |
| Tru9I | TTAA | 1 cut(s) | 197 |
| VpaK11BI | GGWCC | 1 cut(s) | 211 |
| XapI | RAATTY | 1 cut(s) | 263 |
| XspI | CTAG | 1 cut(s) | 305 |
| Zsp2I | ATGCAT | 1 cut(s) | 67 |