Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013345

Physical Location & Seq

Genomic Coordinates Reverse (-)

61060939 .. 61062830

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51345

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGCATCAGTACTCGGGCGGAGGAGGAGGAGGAGGAAGTGGGAGCTGGAATATGATCCCCAGCGTGCCGACCCACAGTAACCCTTCTACGCCGTCCAGTCAGGACCATCTCTACCTCCAACAACACCAACAGCAATTCCAGCAACAACAACAACAACAGCGTCTTCTTCTCCAACAACAACAACAGCAGCAGCAGCAACAACAGCAACAGCAACAGCAACAGCAACAACAACAACAGCATCAGTCTCTCGCCTCCCACTTCCATCTCTTCCACTTGGTGGAGAAGTTATCGGATTCGATTGAGAACGGGACGAGGGATCAGCAATCGGATGCATTGGTCGCTGATTTGAACAACCATTTCGACAAGTGCCAGCAGCTGTTGAACTCCATATCCGGATCCATCACCACCAAGGCTATGACGGTTGAGGGACAGAAGAAGAAGCTTGAAGAGAGTGAGCAATTGTTAAATCAGCGGAGGGACCTGAATAACAAGTACAAAAACTCTGTTGTTGACCTCCTCAAGTCTGAGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med9

Protein Analysis

178

Amino Acids

20.38

Weight (kDa)

6.28

Isoelectric Point (pI)

73.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29580 AT1G55080 AT1G55080
fragaria_vesca	FvH4_6g33500
malus_domestica	MD09G1192700.v1.1
prunus_persica	Prupe.3G049000_v2.0.a1
pyrus_communis	pycom09g10920
rosa_chinensis	RchiOBHm_Chr2g0143361
rosa_laevigata	RLG00000020032
rosa_multiflora	Rmu_sc0003507.1_g000018 Rmu_sc0024801.1_g000003
rosa_roxburghii	Rroxscaffold_2G00101930
rosa_rugosa	Rorug02G0380900
rosa_samantha	Rh2AG433800 Rh2BG441800 Rh2CG419500 Rh2DG451900
rosa_wichuraiana	Rw2G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccIII	TCCGGA	1 cut(s)	395
AciI	CCGC	2 cut(s)	21, 475
AclWI	GGATC	4 cut(s)	52, 327, 393, 406
AdeI	CACNNNGTG	1 cut(s)	280
AfaI	GTAC	2 cut(s)	14, 497
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	3 cut(s)	352, 385, 449
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
AluBI	AGCT	3 cut(s)	48, 379, 445
AluI	AGCT	3 cut(s)	48, 379, 445
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	4 cut(s)	52, 327, 393, 406
AlwNI	CAGNNNCTG	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	395
ApeKI	GCWGC	4 cut(s)	190, 193, 196, 376
AspS9I	GGNCC	2 cut(s)	106, 481
AsuHPI	GGTGA	1 cut(s)	397
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	106, 481
BamHI	GGATCC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	158
BbvI	GCAGC	4 cut(s)	202, 205, 208, 388
BccI	CCATC	3 cut(s)	117, 273, 410
BceAI	ACGGC	2 cut(s)	79, 517
BcoDI	GTCTC	1 cut(s)	252
BisI	GCNGC	4 cut(s)	191, 194, 197, 377
BlsI	GCNGC	4 cut(s)	192, 195, 198, 378
BmcAI	AGTACT	1 cut(s)	14
Bme18I	GGWCC	2 cut(s)	106, 481
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	106, 481
BmiI	GGNNCC	2 cut(s)	400, 482
BmsI	GCATC	3 cut(s)	16, 250, 322
BpiI	GAAGAC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	395
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	5 cut(s)	39, 42, 45, 48, 509
BseXI	GCAGC	4 cut(s)	202, 205, 208, 388
BseYI	CCCAGC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	3 cut(s)	325, 444, 494
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	252
BsmFI	GGGAC	3 cut(s)	325, 444, 494
BsoBI	CYCGRG	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	3 cut(s)	57, 319, 398
BspACI	CCGC	2 cut(s)	21, 475
BspCNI	CTCAG	1 cut(s)	520
BspEI	TCCGGA	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	400, 482
BspPI	GGATC	4 cut(s)	52, 327, 393, 406
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	3 cut(s)	57, 319, 398
BssT1I	CCWWGG	1 cut(s)	411
Bst4CI	ACNGT	2 cut(s)	80, 424
Bst6I	CTCTTC	2 cut(s)	275, 444
BstC8I	GCNNGC	2 cut(s)	68, 374
BstDEI	CTNAG	1 cut(s)	528
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	3 cut(s)	60, 322, 401
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	3 cut(s)	57, 319, 398
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 196, 205, 341
BstV1I	GCAGC	4 cut(s)	202, 205, 208, 388
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	68, 374
CaiI	CAGNNNCTG	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	106, 481
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	13, 496
CviJI	RGCY	5 cut(s)	48, 379, 416, 445, 532
CviKI_1	RGCY	5 cut(s)	48, 379, 416, 445, 532
CviQI	GTAC	2 cut(s)	13, 496
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	3 cut(s)	59, 321, 400
DpnII	GATC	3 cut(s)	57, 319, 398
DraIII	CACNNNGTG	1 cut(s)	280
Eam1104I	CTCTTC	2 cut(s)	275, 444
EarI	CTCTTC	2 cut(s)	275, 444
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	106, 481
Eco88I	CYCGRG	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	411
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	411
FaiI	YATR	3 cut(s)	56, 392, 419
FaqI	GGGAC	3 cut(s)	325, 444, 494
Fnu4HI	GCNGC	4 cut(s)	191, 194, 197, 377
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	4 cut(s)	191, 194, 197, 377
GluI	GCNGC	4 cut(s)	191, 194, 197, 377
GsaI	CCCAGC	1 cut(s)	66
HapII	CCGG	1 cut(s)	396
HgaI	GACGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	295, 331, 529
Hpy188III	TCNNGA	2 cut(s)	104, 396
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	2 cut(s)	80, 424
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 196, 205, 341
HpyF3I	CTNAG	1 cut(s)	528
Kpn2I	TCCGGA	1 cut(s)	395
Kzo9I	GATC	3 cut(s)	57, 319, 398
LmnI	GCTCC	2 cut(s)	4, 45
LpnPI	CCDG	8 cut(s)	34, 76, 89, 112, 155, 386, 409, 497
Lsp1109I	GCAGC	4 cut(s)	202, 205, 208, 388
LweI	GCATC	3 cut(s)	16, 250, 322
MaeIII	GTNAC	1 cut(s)	80
MalI	GATC	3 cut(s)	59, 321, 400
MboI	GATC	3 cut(s)	57, 319, 398
MboII	GAAGA	6 cut(s)	158, 161, 262, 448, 451, 461
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	2 cut(s)	137, 461
MmeI	TCCRAC	2 cut(s)	145, 199
Mph1103I	ATGCAT	1 cut(s)	337
MroI	TCCGGA	1 cut(s)	395
MseI	TTAA	1 cut(s)	467
MspA1I	CMGCKG	2 cut(s)	379, 475
MspI	CCGG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	461
MwoI	GCNNNNNNNGC	4 cut(s)	142, 196, 205, 341
NdeII	GATC	3 cut(s)	57, 319, 398
NlaIV	GGNNCC	2 cut(s)	400, 482
NsiI	ATGCAT	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	4 cut(s)	192, 195, 198, 378
PpuMI	RGGWCCY	1 cut(s)	481
Psp5II	RGGWCCY	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	400, 482
PspPI	GGNCC	2 cut(s)	106, 481
PspPPI	RGGWCCY	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	2 cut(s)	14, 497
RsaNI	GTAC	2 cut(s)	13, 496
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	4 cut(s)	191, 194, 197, 377
Sau3AI	GATC	3 cut(s)	57, 319, 398
Sau96I	GGNCC	2 cut(s)	106, 481
ScaI	AGTACT	1 cut(s)	14
SetI	ASST	6 cut(s)	50, 120, 381, 447, 486, 519
SfaNI	GCATC	3 cut(s)	16, 250, 322
SinI	GGWCC	2 cut(s)	106, 481
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	2 cut(s)	137, 461
SsiI	CCGC	2 cut(s)	21, 475
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	2 cut(s)	80, 424
TaqI	TCGA	2 cut(s)	299, 363
TasI	AATT	2 cut(s)	137, 461
TatI	WGTACW	2 cut(s)	12, 495
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TseI	GCWGC	4 cut(s)	190, 193, 196, 376
Van91I	CCANNNNNTGG	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	106, 481
ZrmI	AGTACT	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.