Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013345

Physical Location & Seq

Genomic Coordinates Forward (+)

3459678 .. 3462004

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G049000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAGCATTCGTACTCTGGAGGAGGAGGAGGAGGGGGAGGAAGCTGGAATATGATTCCAAGCGTGCCGACTCACAGTAACCCCTCTACACCCTCGAGTCAGGACCATATGTACCTCCATCATCAGCAGCAGCAGCAGCAGCAGCAACAACAACAGTTTCAACAGCAACAACAGCGCCTTCTTCTTCAACAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCATCACCAGTCACTCGCCTCACACTTCCATCTCTTCCATTTGGTGGAGAAATTAGCTGACACCATCGAGAATGGCACTAGGGATCAGCAATCTGAATCATTGATCAGTGATTTGAACAACCACTTTGAGAAGTGCCAGCAGCTGTTGAACTCCATATCCGGATCAATCAGCACCAAGGCTATGACGGTTGAGGGACAGAAGCGAAAGCTGGAAGAAAGTGAACAATTGTTGAATCAGAGGAGGGACCTGATTACCAAGTACAGAAACTCTGTTGAAGACCTCCTCAAGTCTGAGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med9

Protein Analysis

184

Amino Acids

21.19

Weight (kDa)

6.23

Isoelectric Point (pI)

79.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29580 AT1G55080 AT1G55080
fragaria_vesca	FvH4_6g33500
malus_domestica	MD09G1192700.v1.1
prunus_persica	Prupe.3G049000_v2.0.a1
pyrus_communis	pycom09g10920
rosa_chinensis	RchiOBHm_Chr2g0143361
rosa_laevigata	RLG00000020032
rosa_multiflora	Rmu_sc0003507.1_g000018 Rmu_sc0024801.1_g000003
rosa_roxburghii	Rroxscaffold_2G00101930
rosa_rugosa	Rorug02G0380900
rosa_samantha	Rh2AG433800 Rh2BG441800 Rh2CG419500 Rh2DG451900
rosa_wichuraiana	Rw2G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccIII	TCCGGA	1 cut(s)	410
AclWI	GGATC	2 cut(s)	342, 421
AfaI	GTAC	3 cut(s)	14, 113, 512
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	6 cut(s)	161, 188, 367, 400, 484, 527
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	4 cut(s)	45, 308, 394, 460
AluI	AGCT	4 cut(s)	45, 308, 394, 460
AlwI	GGATC	2 cut(s)	342, 421
AlwNI	CAGNNNCTG	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	94
Aor13HI	TCCGGA	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	103, 496
AsuHPI	GGTGA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	2 cut(s)	103, 496
BbsI	GAAGAC	1 cut(s)	534
BccI	CCATC	3 cut(s)	126, 288, 323
BceAI	ACGGC	1 cut(s)	532
BclI	TGATCA	1 cut(s)	354
BfaI	CTAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	178
Bme18I	GGWCC	2 cut(s)	103, 496
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	103, 496
BmiI	GGNNCC	1 cut(s)	497
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	259
BseAI	TCCGGA	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	6 cut(s)	36, 39, 42, 45, 505, 524
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	411
BslFI	GGGAC	2 cut(s)	459, 509
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmFI	GGGAC	2 cut(s)	459, 509
BsmI	GAATGC	1 cut(s)	7
BsoBI	CYCGRG	1 cut(s)	94
Bsp13I	TCCGGA	1 cut(s)	410
Bsp143I	GATC	3 cut(s)	334, 354, 413
BspCNI	CTCAG	1 cut(s)	535
BspEI	TCCGGA	1 cut(s)	410
BspLI	GGNNCC	1 cut(s)	497
BspPI	GGATC	2 cut(s)	342, 421
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	3 cut(s)	334, 354, 413
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	3 cut(s)	77, 156, 439
Bst6I	CTCTTC	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	65, 389
BstDEI	CTNAG	1 cut(s)	543
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	337, 357, 416
BstMBI	GATC	3 cut(s)	334, 354, 413
BstV2I	GAAGAC	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	65, 389
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	103, 496
Csp6I	GTAC	3 cut(s)	13, 112, 511
CviJI	RGCY	6 cut(s)	45, 308, 394, 431, 460, 547
CviKI_1	RGCY	6 cut(s)	45, 308, 394, 431, 460, 547
CviQI	GTAC	3 cut(s)	13, 112, 511
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	3 cut(s)	336, 356, 415
DpnII	GATC	3 cut(s)	334, 354, 413
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	103, 496
Eco88I	CYCGRG	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaiI	YATR	5 cut(s)	53, 108, 110, 407, 434
FaqI	GGGAC	2 cut(s)	459, 509
FauNDI	CATATG	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	354
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	178
HapII	CCGG	1 cut(s)	411
HhaI	GCGC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	5 cut(s)	55, 70, 97, 347, 484
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	3 cut(s)	346, 489, 544
Hpy188III	TCNNGA	4 cut(s)	18, 101, 319, 411
Hpy8I	GTNNAC	1 cut(s)	473
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	3 cut(s)	77, 156, 439
HpyF3I	CTNAG	1 cut(s)	543
HspAI	GCGC	1 cut(s)	175
Kpn2I	TCCGGA	1 cut(s)	410
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	334, 354, 413
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	3, 31, 86, 272, 401, 424, 446, 512
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	77, 261
MalI	GATC	3 cut(s)	336, 356, 415
MboI	GATC	3 cut(s)	334, 354, 413
MboII	GAAGA	5 cut(s)	173, 176, 277, 476, 539
MfeI	CAATTG	1 cut(s)	476
MluCI	AATT	2 cut(s)	302, 476
MlyI	GAGTC	2 cut(s)	64, 106
MroI	TCCGGA	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	7
NdeI	CATATG	1 cut(s)	108
NdeII	GATC	3 cut(s)	334, 354, 413
NlaIV	GGNNCC	1 cut(s)	497
NmuCI	GTSAC	1 cut(s)	261
PaeR7I	CTCGAG	1 cut(s)	94
PctI	GAATGC	1 cut(s)	7
PfeI	GAWTC	3 cut(s)	55, 347, 484
PflMI	CCANNNNNTGG	1 cut(s)	295
PleI	GAGTC	2 cut(s)	64, 105
PpsI	GAGTC	2 cut(s)	64, 105
PpuMI	RGGWCCY	1 cut(s)	496
Psp5II	RGGWCCY	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	497
PspPI	GGNCC	2 cut(s)	103, 496
PspPPI	RGGWCCY	1 cut(s)	496
PspXI	VCTCGAGB	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	3 cut(s)	14, 113, 512
RsaNI	GTAC	3 cut(s)	13, 112, 511
Sau3AI	GATC	3 cut(s)	334, 354, 413
Sau96I	GGNCC	2 cut(s)	103, 496
SchI	GAGTC	2 cut(s)	64, 106
SetI	ASST	7 cut(s)	47, 117, 310, 396, 462, 501, 534
SfaNI	GCATC	1 cut(s)	262
Sfr274I	CTCGAG	1 cut(s)	94
SinI	GGWCC	2 cut(s)	103, 496
SlaI	CTCGAG	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	94, 536
SmoI	CTYRAG	2 cut(s)	94, 536
Sse9I	AATT	2 cut(s)	302, 476
SspMI	CTAG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	77, 156, 439
TaqI	TCGA	2 cut(s)	95, 318
TasI	AATT	2 cut(s)	302, 476
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	3 cut(s)	55, 347, 484
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	261
TspRI	CASTG	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	103, 496
XhoI	CTCGAG	1 cut(s)	94
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.