Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013345

Physical Location & Seq

Genomic Coordinates Forward (+)

9026043 .. 9027288

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCCAACCGTAACAGGTTCCTTCTTGTTCAATTCAATCTCTGCAGTCTGCGGTGCACATATCAAAGTCCAAACCTTTTTCCATTTCCGGAGAATCTGTACGGCGGAGAGAGAATGGAGCATTCGTACTCCGGTGGCGGCGGAGGAGGAGGAAGCTGGAATATGATTCCAAGCGTGCCGACTCACAGTAACCCCTCTACGCCGTCGAGCCAGGACCATATGTACCTCCATCATCAGCAGCAGCAGCAACAACAGCAGTTTCAACAGCAGCAGCAGCGTCTTCTTCTTCAACAACAACAGCAGCAGCAGCAACAGCAACAACAGCAGCAGCAGCAGCATCACCAGTCGCTCGCCTCACATTTCCATCTCTTCCATTTGGTGGAGAAATTAGCTGACACGATCGAGAATGGAACTAGGGATCAGCAGTCTGATGCATTGGTTAGCGATCTGAAGAACCATTTTGAGAAGTGCCAGCAGCTGCTCAACTCCATATCTGGATCGATCGGCACCAAGGCTATGACGGTTGAGGGACAGAAGCGAAAGTTGGAAGAAAGTGAGCAATCGTTGCATCAGAGGAGGGACTTGATGACCAAGTACAGAAAATCTGTTGAAGACCTCCTCAAGTCTGAGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med9

Protein Analysis

212

Amino Acids

24.45

Weight (kDa)

7.21

Isoelectric Point (pI)

72.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29580 AT1G55080 AT1G55080
fragaria_vesca	FvH4_6g33500
malus_domestica	MD09G1192700.v1.1
prunus_persica	Prupe.3G049000_v2.0.a1
pyrus_communis	pycom09g10920
rosa_chinensis	RchiOBHm_Chr2g0143361
rosa_laevigata	RLG00000020032
rosa_multiflora	Rmu_sc0003507.1_g000018 Rmu_sc0024801.1_g000003
rosa_roxburghii	Rroxscaffold_2G00101930
rosa_rugosa	Rorug02G0380900
rosa_samantha	Rh2AG433800 Rh2BG441800 Rh2CG419500 Rh2DG451900
rosa_wichuraiana	Rw2G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	506
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	4 cut(s)	52, 105, 138, 141
AclWI	GGATC	2 cut(s)	426, 505
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	4 cut(s)	101, 128, 224, 596
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	5 cut(s)	32, 37, 263, 290, 611
AjnI	CCWGG	1 cut(s)	210
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	3 cut(s)	156, 392, 478
AluI	AGCT	3 cut(s)	156, 392, 478
Alw21I	GWGCWC	1 cut(s)	59
Alw44I	GTGCAC	1 cut(s)	55
AlwI	GGATC	2 cut(s)	426, 505
AlwNI	CAGNNNCTG	1 cut(s)	478
Aor13HI	TCCGGA	1 cut(s)	88
ApaLI	GTGCAC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	506
BbsI	GAAGAC	2 cut(s)	272, 618
Bbv12I	GWGCWC	1 cut(s)	59
BccI	CCATC	2 cut(s)	237, 372
BceAI	ACGGC	3 cut(s)	118, 187, 616
BciT130I	CCWGG	1 cut(s)	212
BfaI	CTAG	1 cut(s)	414
BfmI	CTRYAG	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	20, 508
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	3 cut(s)	346, 421, 577
BpiI	GAAGAC	2 cut(s)	272, 618
BpuEI	CTTGAG	1 cut(s)	605
Bsa29I	ATCGAT	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	2 cut(s)	88, 131
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 110, 113, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	343
BseAI	TCCGGA	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	212
BseCI	ATCGAT	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	510
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	4 cut(s)	159, 162, 589, 608
BseSI	GKGCMC	1 cut(s)	59
Bsh1285I	CGRYCG	2 cut(s)	402, 504
BshNI	GGYRCC	1 cut(s)	506
BshVI	ATCGAT	1 cut(s)	500
BsiEI	CGRYCG	2 cut(s)	402, 504
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	89, 132
BslFI	GGGAC	2 cut(s)	543, 593
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmFI	GGGAC	2 cut(s)	543, 593
BsmI	GAATGC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp13I	TCCGGA	1 cut(s)	88
Bsp143I	GATC	5 cut(s)	399, 418, 445, 497, 501
BspACI	CCGC	4 cut(s)	52, 105, 138, 141
BspCNI	CTCAG	1 cut(s)	619
BspDI	ATCGAT	1 cut(s)	500
BspEI	TCCGGA	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	20, 508
BspMAI	CTGCAG	1 cut(s)	47
BspPI	GGATC	2 cut(s)	426, 505
BspT107I	GGYRCC	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	5 cut(s)	399, 418, 445, 497, 501
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	3 cut(s)	11, 188, 523
Bst6I	CTCTTC	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	565
BstC8I	GCNNGC	3 cut(s)	176, 351, 473
BstDEI	CTNAG	1 cut(s)	627
BstKTI	GATC	5 cut(s)	402, 421, 448, 500, 504
BstMBI	GATC	5 cut(s)	399, 418, 445, 497, 501
BstMCI	CGRYCG	2 cut(s)	402, 504
BstMWI	GCNNNNNNNGC	9 cut(s)	244, 253, 274, 307, 313, 322, 331, 334, 565
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	43
BstSLI	GKGCMC	1 cut(s)	59
BstV2I	GAAGAC	2 cut(s)	272, 618
Bsu15I	ATCGAT	1 cut(s)	500
BsuTUI	ATCGAT	1 cut(s)	500
Cac8I	GCNNGC	3 cut(s)	176, 351, 473
CaiI	CAGNNNCTG	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	500
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	4 cut(s)	100, 127, 223, 595
CviJI	RGCY	6 cut(s)	156, 210, 392, 478, 515, 631
CviKI_1	RGCY	6 cut(s)	156, 210, 392, 478, 515, 631
CviQI	GTAC	4 cut(s)	100, 127, 223, 595
DdeI	CTNAG	1 cut(s)	627
DpnI	GATC	5 cut(s)	401, 420, 447, 499, 503
DpnII	GATC	5 cut(s)	399, 418, 445, 497, 501
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
EciI	GGCGGA	2 cut(s)	120, 156
Eco130I	CCWWGG	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	510
FaiI	YATR	6 cut(s)	61, 164, 219, 221, 491, 518
FaqI	GGGAC	2 cut(s)	543, 593
FauNDI	CATATG	1 cut(s)	219
FspBI	CTAG	1 cut(s)	414
HapII	CCGG	2 cut(s)	89, 132
HgaI	GACGC	1 cut(s)	266
HinfI	GANTC	3 cut(s)	94, 166, 181
HpaII	CCGG	2 cut(s)	89, 132
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	4 cut(s)	430, 450, 573, 628
Hpy188III	TCNNGA	3 cut(s)	89, 403, 495
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	32
HpyCH4III	ACNGT	3 cut(s)	11, 188, 523
HpyCH4V	TGCA	4 cut(s)	45, 57, 434, 568
HpyF10VI	GCNNNNNNNGC	9 cut(s)	244, 253, 274, 307, 313, 322, 331, 334, 565
HpyF3I	CTNAG	1 cut(s)	627
Kpn2I	TCCGGA	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	399, 418, 445, 497, 501
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	8 cut(s)	102, 142, 145, 197, 224, 356, 480, 485
LweI	GCATC	3 cut(s)	346, 421, 577
MaeI	CTAG	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	11, 188
MalI	GATC	5 cut(s)	401, 420, 447, 499, 503
MboI	GATC	5 cut(s)	399, 418, 445, 497, 501
MboII	GAAGA	7 cut(s)	272, 275, 278, 361, 463, 560, 623
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	2 cut(s)	32, 386
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	2 cut(s)	30, 525
Mph1103I	ATGCAT	1 cut(s)	436
MroI	TCCGGA	1 cut(s)	88
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	2 cut(s)	89, 132
MspR9I	CCNGG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	9 cut(s)	244, 253, 274, 307, 313, 322, 331, 334, 565
NdeI	CATATG	1 cut(s)	219
NdeII	GATC	5 cut(s)	399, 418, 445, 497, 501
NlaIV	GGNNCC	2 cut(s)	20, 508
NsiI	ATGCAT	1 cut(s)	436
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	94, 166
PflMI	CCANNNNNTGG	1 cut(s)	379
Ple19I	CGATCG	2 cut(s)	402, 504
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	20, 508
PspPI	GGNCC	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	478
PvuI	CGATCG	2 cut(s)	402, 504
PvuII	CAGCTG	1 cut(s)	478
RsaI	GTAC	4 cut(s)	101, 128, 224, 596
RsaNI	GTAC	4 cut(s)	100, 127, 223, 595
Sau3AI	GATC	5 cut(s)	399, 418, 445, 497, 501
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	7 cut(s)	20, 78, 158, 228, 394, 480, 618
SfaNI	GCATC	3 cut(s)	346, 421, 577
SfcI	CTRYAG	1 cut(s)	43
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	2 cut(s)	32, 386
SsiI	CCGC	4 cut(s)	52, 105, 138, 141
SspMI	CTAG	1 cut(s)	414
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	3 cut(s)	11, 188, 523
TaqI	TCGA	3 cut(s)	206, 402, 500
TasI	AATT	2 cut(s)	32, 386
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	94, 166
Van91I	CCANNNNNTGG	1 cut(s)	379
VneI	GTGCAC	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	214
XspI	CTAG	1 cut(s)	414
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.