mediator of RNA polymerase II transcription
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G29580 AT1G55080 AT1G55080 |
| fragaria_vesca | FvH4_6g33500 |
| malus_domestica | MD09G1192700.v1.1 |
| prunus_persica | Prupe.3G049000_v2.0.a1 |
| pyrus_communis | pycom09g10920 |
| rosa_chinensis | RchiOBHm_Chr2g0143361 |
| rosa_laevigata | RLG00000020032 |
| rosa_multiflora | Rmu_sc0003507.1_g000018 Rmu_sc0024801.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00101930 |
| rosa_rugosa | Rorug02G0380900 |
| rosa_samantha | Rh2AG433800 Rh2BG441800 Rh2CG419500 Rh2DG451900 |
| rosa_wichuraiana | Rw2G035370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 274 |
| AccIII | TCCGGA | 1 cut(s) | 389 |
| AciI | CCGC | 2 cut(s) | 21, 469 |
| AclWI | GGATC | 4 cut(s) | 52, 321, 387, 400 |
| AdeI | CACNNNGTG | 1 cut(s) | 274 |
| AfaI | GTAC | 2 cut(s) | 14, 491 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 274 |
| AgsI | TTSAA | 3 cut(s) | 346, 379, 443 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 371, 403 |
| AluBI | AGCT | 2 cut(s) | 48, 439 |
| AluI | AGCT | 2 cut(s) | 48, 439 |
| Alw26I | GTCTC | 1 cut(s) | 246 |
| AlwI | GGATC | 4 cut(s) | 52, 321, 387, 400 |
| Ama87I | CYCGRG | 1 cut(s) | 16 |
| Aor13HI | TCCGGA | 1 cut(s) | 389 |
| ApeKI | GCWGC | 2 cut(s) | 193, 196 |
| AspS9I | GGNCC | 2 cut(s) | 106, 475 |
| AsuHPI | GGTGA | 1 cut(s) | 391 |
| AvaI | CYCGRG | 1 cut(s) | 16 |
| AvaII | GGWCC | 2 cut(s) | 106, 475 |
| BamHI | GGATCC | 1 cut(s) | 392 |
| BbsI | GAAGAC | 1 cut(s) | 158 |
| BbvI | GCAGC | 2 cut(s) | 205, 208 |
| BccI | CCATC | 3 cut(s) | 117, 267, 404 |
| BceAI | ACGGC | 2 cut(s) | 79, 511 |
| BcoDI | GTCTC | 1 cut(s) | 246 |
| BisI | GCNGC | 2 cut(s) | 194, 197 |
| BlsI | GCNGC | 2 cut(s) | 195, 198 |
| BmcAI | AGTACT | 1 cut(s) | 14 |
| Bme18I | GGWCC | 2 cut(s) | 106, 475 |
| BmeT110I | CYCGRG | 1 cut(s) | 16 |
| BmgT120I | GGNCC | 2 cut(s) | 106, 475 |
| BmiI | GGNNCC | 2 cut(s) | 394, 476 |
| BmrI | ACTGGG | 1 cut(s) | 57 |
| BmsI | GCATC | 3 cut(s) | 16, 244, 316 |
| BmuI | ACTGGG | 1 cut(s) | 57 |
| BpiI | GAAGAC | 1 cut(s) | 158 |
| BpuEI | CTTGAG | 1 cut(s) | 500 |
| BsaJI | CCNNGG | 1 cut(s) | 405 |
| BsaWI | WCCGGW | 1 cut(s) | 389 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 274 |
| Bse1I | ACTGG | 2 cut(s) | 63, 99 |
| BseAI | TCCGGA | 1 cut(s) | 389 |
| BseDI | CCNNGG | 1 cut(s) | 405 |
| BseGI | GGATG | 1 cut(s) | 331 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 274 |
| BseMII | CTCAG | 1 cut(s) | 513 |
| BseNI | ACTGG | 2 cut(s) | 63, 99 |
| BseRI | GAGGAG | 5 cut(s) | 39, 42, 45, 48, 503 |
| BseXI | GCAGC | 2 cut(s) | 205, 208 |
| BsiHKCI | CYCGRG | 1 cut(s) | 16 |
| BsiSI | CCGG | 1 cut(s) | 390 |
| BslFI | GGGAC | 3 cut(s) | 319, 438, 488 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 274 |
| BsmAI | GTCTC | 1 cut(s) | 246 |
| BsmFI | GGGAC | 3 cut(s) | 319, 438, 488 |
| BsoBI | CYCGRG | 1 cut(s) | 16 |
| Bsp13I | TCCGGA | 1 cut(s) | 389 |
| Bsp143I | GATC | 3 cut(s) | 57, 313, 392 |
| BspACI | CCGC | 2 cut(s) | 21, 469 |
| BspCNI | CTCAG | 1 cut(s) | 514 |
| BspEI | TCCGGA | 1 cut(s) | 389 |
| BspLI | GGNNCC | 2 cut(s) | 394, 476 |
| BspPI | GGATC | 4 cut(s) | 52, 321, 387, 400 |
| BsrI | ACTGG | 2 cut(s) | 63, 99 |
| BssECI | CCNNGG | 1 cut(s) | 405 |
| BssMI | GATC | 3 cut(s) | 57, 313, 392 |
| BssT1I | CCWWGG | 1 cut(s) | 405 |
| Bst4CI | ACNGT | 2 cut(s) | 80, 418 |
| Bst6I | CTCTTC | 2 cut(s) | 269, 438 |
| BstC8I | GCNNGC | 1 cut(s) | 368 |
| BstDEI | CTNAG | 1 cut(s) | 522 |
| BstF5I | GGATG | 1 cut(s) | 331 |
| BstKTI | GATC | 3 cut(s) | 60, 316, 395 |
| BstMAI | GTCTC | 1 cut(s) | 246 |
| BstMBI | GATC | 3 cut(s) | 57, 313, 392 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 142, 205, 335 |
| BstV1I | GCAGC | 2 cut(s) | 205, 208 |
| BstV2I | GAAGAC | 1 cut(s) | 158 |
| BstX2I | RGATCY | 1 cut(s) | 392 |
| BstYI | RGATCY | 1 cut(s) | 392 |
| BtsCI | GGATG | 1 cut(s) | 331 |
| BtsIMutI | CAGTG | 1 cut(s) | 70 |
| Cac8I | GCNNGC | 1 cut(s) | 368 |
| Cfr13I | GGNCC | 2 cut(s) | 106, 475 |
| CseI | GACGC | 1 cut(s) | 152 |
| Csp6I | GTAC | 2 cut(s) | 13, 490 |
| CviJI | RGCY | 4 cut(s) | 48, 410, 439, 526 |
| CviKI_1 | RGCY | 4 cut(s) | 48, 410, 439, 526 |
| CviQI | GTAC | 2 cut(s) | 13, 490 |
| DdeI | CTNAG | 1 cut(s) | 522 |
| DpnI | GATC | 3 cut(s) | 59, 315, 394 |
| DpnII | GATC | 3 cut(s) | 57, 313, 392 |
| DraIII | CACNNNGTG | 1 cut(s) | 274 |
| Eam1104I | CTCTTC | 2 cut(s) | 269, 438 |
| EarI | CTCTTC | 2 cut(s) | 269, 438 |
| EciI | GGCGGA | 1 cut(s) | 36 |
| Eco130I | CCWWGG | 1 cut(s) | 405 |
| Eco47I | GGWCC | 2 cut(s) | 106, 475 |
| Eco88I | CYCGRG | 1 cut(s) | 16 |
| EcoO109I | RGGNCCY | 1 cut(s) | 475 |
| EcoT14I | CCWWGG | 1 cut(s) | 405 |
| EcoT22I | ATGCAT | 1 cut(s) | 331 |
| ErhI | CCWWGG | 1 cut(s) | 405 |
| FaiI | YATR | 3 cut(s) | 56, 386, 413 |
| FaqI | GGGAC | 3 cut(s) | 319, 438, 488 |
| Fnu4HI | GCNGC | 2 cut(s) | 194, 197 |
| FokI | GGATG | 1 cut(s) | 338 |
| Fsp4HI | GCNGC | 2 cut(s) | 194, 197 |
| GluI | GCNGC | 2 cut(s) | 194, 197 |
| HapII | CCGG | 1 cut(s) | 390 |
| HgaI | GACGC | 1 cut(s) | 152 |
| HincII | GTYRAC | 1 cut(s) | 508 |
| HindII | GTYRAC | 1 cut(s) | 508 |
| HindIII | AAGCTT | 1 cut(s) | 437 |
| HinfI | GANTC | 1 cut(s) | 290 |
| HpaII | CCGG | 1 cut(s) | 390 |
| HphI | GGTGA | 1 cut(s) | 391 |
| Hpy166II | GTNNAC | 1 cut(s) | 508 |
| Hpy188I | TCNGA | 3 cut(s) | 289, 325, 523 |
| Hpy188III | TCNNGA | 2 cut(s) | 104, 390 |
| Hpy8I | GTNNAC | 1 cut(s) | 508 |
| HpyAV | CCTTC | 1 cut(s) | 96 |
| HpyCH4III | ACNGT | 2 cut(s) | 80, 418 |
| HpyCH4V | TGCA | 1 cut(s) | 329 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 142, 205, 335 |
| HpyF3I | CTNAG | 1 cut(s) | 522 |
| Kpn2I | TCCGGA | 1 cut(s) | 389 |
| Kzo9I | GATC | 3 cut(s) | 57, 313, 392 |
| LmnI | GCTCC | 2 cut(s) | 4, 45 |
| LpnPI | CCDG | 8 cut(s) | 34, 76, 89, 112, 155, 380, 403, 491 |
| Lsp1109I | GCAGC | 2 cut(s) | 205, 208 |
| LweI | GCATC | 3 cut(s) | 16, 244, 316 |
| MaeIII | GTNAC | 1 cut(s) | 80 |
| MalI | GATC | 3 cut(s) | 59, 315, 394 |
| MboI | GATC | 3 cut(s) | 57, 313, 392 |
| MboII | GAAGA | 6 cut(s) | 158, 161, 256, 442, 445, 455 |
| MfeI | CAATTG | 1 cut(s) | 455 |
| MflI | RGATCY | 1 cut(s) | 392 |
| MluCI | AATT | 2 cut(s) | 137, 455 |
| MmeI | TCCRAC | 3 cut(s) | 145, 199, 303 |
| Mph1103I | ATGCAT | 1 cut(s) | 331 |
| MroI | TCCGGA | 1 cut(s) | 389 |
| MseI | TTAA | 1 cut(s) | 461 |
| MspA1I | CMGCKG | 1 cut(s) | 469 |
| MspI | CCGG | 1 cut(s) | 390 |
| MunI | CAATTG | 1 cut(s) | 455 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 142, 205, 335 |
| NdeII | GATC | 3 cut(s) | 57, 313, 392 |
| NlaIV | GGNNCC | 2 cut(s) | 394, 476 |
| NsiI | ATGCAT | 1 cut(s) | 331 |
| PfeI | GAWTC | 1 cut(s) | 290 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 274 |
| PkrI | GCNGC | 2 cut(s) | 195, 198 |
| PpuMI | RGGWCCY | 1 cut(s) | 475 |
| Psp5II | RGGWCCY | 1 cut(s) | 475 |
| PspN4I | GGNNCC | 2 cut(s) | 394, 476 |
| PspPI | GGNCC | 2 cut(s) | 106, 475 |
| PspPPI | RGGWCCY | 1 cut(s) | 475 |
| PsuI | RGATCY | 1 cut(s) | 392 |
| RsaI | GTAC | 2 cut(s) | 14, 491 |
| RsaNI | GTAC | 2 cut(s) | 13, 490 |
| SaqAI | TTAA | 1 cut(s) | 461 |
| SatI | GCNGC | 2 cut(s) | 194, 197 |
| Sau3AI | GATC | 3 cut(s) | 57, 313, 392 |
| Sau96I | GGNCC | 2 cut(s) | 106, 475 |
| ScaI | AGTACT | 1 cut(s) | 14 |
| SetI | ASST | 5 cut(s) | 50, 120, 441, 480, 513 |
| SfaNI | GCATC | 3 cut(s) | 16, 244, 316 |
| SinI | GGWCC | 2 cut(s) | 106, 475 |
| SmlI | CTYRAG | 1 cut(s) | 515 |
| SmoI | CTYRAG | 1 cut(s) | 515 |
| Sse9I | AATT | 2 cut(s) | 137, 455 |
| SsiI | CCGC | 2 cut(s) | 21, 469 |
| StyI | CCWWGG | 1 cut(s) | 405 |
| TaaI | ACNGT | 2 cut(s) | 80, 418 |
| TaqI | TCGA | 2 cut(s) | 293, 357 |
| TasI | AATT | 2 cut(s) | 137, 455 |
| TatI | WGTACW | 2 cut(s) | 12, 489 |
| TfiI | GAWTC | 1 cut(s) | 290 |
| Tru1I | TTAA | 1 cut(s) | 461 |
| Tru9I | TTAA | 1 cut(s) | 461 |
| TscAI | CASTG | 1 cut(s) | 70 |
| TseI | GCWGC | 2 cut(s) | 193, 196 |
| TspRI | CASTG | 1 cut(s) | 70 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 274 |
| VpaK11BI | GGWCC | 2 cut(s) | 106, 475 |
| ZrmI | AGTACT | 1 cut(s) | 14 |
| Zsp2I | ATGCAT | 1 cut(s) | 331 |