Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003507.1

Orthogroup ID

OG0013345

Physical Location & Seq

Genomic Coordinates Reverse (-)

92925 .. 93500

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003507.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgtgggtgtttttgatttgcggtgaattgcagttggtggagaagttatcggattcgattgagaacgggacgagggatcagcaatcggatgcattggtcgctgatttgaacaaccatttcgacaaatgccagcagctgttgaactccatatccggatccatcaccaccaaggctatgacggttgagggacagaagaagaagcttgaagagagtgagcaattgttaaatcagcggagggacctgaataacaagtacaaaaactctgttgttgacctcctcaagtctgagccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med9

Protein Analysis

97

Amino Acids

11.02

Weight (kDa)

5.08

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29580 AT1G55080 AT1G55080
fragaria_vesca	FvH4_6g33500
malus_domestica	MD09G1192700.v1.1
prunus_persica	Prupe.3G049000_v2.0.a1
pyrus_communis	pycom09g10920
rosa_chinensis	RchiOBHm_Chr2g0143361
rosa_laevigata	RLG00000020032
rosa_multiflora	Rmu_sc0003507.1_g000018 Rmu_sc0024801.1_g000003
rosa_roxburghii	Rroxscaffold_2G00101930
rosa_rugosa	Rorug02G0380900
rosa_samantha	Rh2AG433800 Rh2BG441800 Rh2CG419500 Rh2DG451900
rosa_wichuraiana	Rw2G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	2 cut(s)	21, 232
AclWI	GGATC	3 cut(s)	84, 150, 163
AfaI	GTAC	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	109, 142, 206
AloI	GAACNNNNNNTCC	2 cut(s)	134, 166
AluBI	AGCT	2 cut(s)	136, 202
AluI	AGCT	2 cut(s)	136, 202
AlwI	GGATC	3 cut(s)	84, 150, 163
AlwNI	CAGNNNCTG	1 cut(s)	136
Aor13HI	TCCGGA	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	35, 154
AvaII	GGWCC	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	274
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	157, 239
BmsI	GCATC	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	168
BsaWI	WCCGGW	1 cut(s)	152
BseAI	TCCGGA	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	3 cut(s)	82, 201, 251
BsmFI	GGGAC	3 cut(s)	82, 201, 251
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	76, 155
BspACI	CCGC	2 cut(s)	21, 232
BspCNI	CTCAG	1 cut(s)	277
BspEI	TCCGGA	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	157, 239
BspPI	GGATC	3 cut(s)	84, 150, 163
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	76, 155
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	2 cut(s)	79, 158
BstMBI	GATC	2 cut(s)	76, 155
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	131
CaiI	CAGNNNCTG	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	253
CviJI	RGCY	4 cut(s)	136, 173, 202, 289
CviKI_1	RGCY	4 cut(s)	136, 173, 202, 289
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	78, 157
DpnII	GATC	2 cut(s)	76, 155
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	168
FaiI	YATR	2 cut(s)	149, 176
FaqI	GGGAC	3 cut(s)	82, 201, 251
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	134
HapII	CCGG	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	2 cut(s)	35, 154
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	52, 88, 286
Hpy188III	TCNNGA	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	2 cut(s)	31, 92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	285
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	2 cut(s)	76, 155
LpnPI	CCDG	3 cut(s)	143, 166, 254
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	79
MalI	GATC	2 cut(s)	78, 157
MboI	GATC	2 cut(s)	76, 155
MboII	GAAGA	3 cut(s)	205, 208, 218
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	2 cut(s)	26, 218
MnlI	CCTC	5 cut(s)	66, 178, 228, 284, 287
Mph1103I	ATGCAT	1 cut(s)	94
MroI	TCCGGA	1 cut(s)	152
MseI	TTAA	1 cut(s)	224
MspA1I	CMGCKG	2 cut(s)	136, 232
MspI	CCGG	1 cut(s)	153
MunI	CAATTG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	2 cut(s)	76, 155
NlaIV	GGNNCC	2 cut(s)	157, 239
NsiI	ATGCAT	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	157, 239
PspPI	GGNCC	1 cut(s)	238
PspPPI	RGGWCCY	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	76, 155
Sau96I	GGNCC	1 cut(s)	238
SetI	ASST	4 cut(s)	138, 204, 243, 276
SfaNI	GCATC	1 cut(s)	79
SgeI	CNNG	8 cut(s)	79, 84, 142, 165, 181, 215, 253, 262
SinI	GGWCC	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	26, 218
SsiI	CCGC	2 cut(s)	21, 232
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	56, 120
TasI	AATT	2 cut(s)	26, 218
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TseI	GCWGC	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.