mediator of RNA polymerase II transcription
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G29580 AT1G55080 AT1G55080 |
| fragaria_vesca | FvH4_6g33500 |
| malus_domestica | MD09G1192700.v1.1 |
| prunus_persica | Prupe.3G049000_v2.0.a1 |
| pyrus_communis | pycom09g10920 |
| rosa_chinensis | RchiOBHm_Chr2g0143361 |
| rosa_laevigata | RLG00000020032 |
| rosa_multiflora | Rmu_sc0003507.1_g000018 Rmu_sc0024801.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00101930 |
| rosa_rugosa | Rorug02G0380900 |
| rosa_samantha | Rh2AG433800 Rh2BG441800 Rh2CG419500 Rh2DG451900 |
| rosa_wichuraiana | Rw2G035370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 256 |
| AccIII | TCCGGA | 1 cut(s) | 371 |
| AciI | CCGC | 1 cut(s) | 451 |
| AclWI | GGATC | 4 cut(s) | 43, 303, 369, 382 |
| AdeI | CACNNNGTG | 1 cut(s) | 256 |
| AfaI | GTAC | 2 cut(s) | 14, 473 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 256 |
| AgsI | TTSAA | 3 cut(s) | 328, 361, 425 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 353, 385 |
| AluBI | AGCT | 3 cut(s) | 39, 355, 421 |
| AluI | AGCT | 3 cut(s) | 39, 355, 421 |
| Alw26I | GTCTC | 1 cut(s) | 228 |
| AlwI | GGATC | 4 cut(s) | 43, 303, 369, 382 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 355 |
| Ama87I | CYCGRG | 1 cut(s) | 16 |
| Aor13HI | TCCGGA | 1 cut(s) | 371 |
| ApeKI | GCWGC | 1 cut(s) | 352 |
| AspS9I | GGNCC | 2 cut(s) | 97, 457 |
| AsuHPI | GGTGA | 1 cut(s) | 373 |
| AvaI | CYCGRG | 1 cut(s) | 16 |
| AvaII | GGWCC | 2 cut(s) | 97, 457 |
| BamHI | GGATCC | 1 cut(s) | 374 |
| BbsI | GAAGAC | 1 cut(s) | 149 |
| BbvI | GCAGC | 1 cut(s) | 364 |
| BccI | CCATC | 3 cut(s) | 108, 249, 386 |
| BceAI | ACGGC | 2 cut(s) | 70, 493 |
| BcoDI | GTCTC | 1 cut(s) | 228 |
| BisI | GCNGC | 1 cut(s) | 353 |
| BlsI | GCNGC | 1 cut(s) | 354 |
| BmcAI | AGTACT | 1 cut(s) | 14 |
| Bme18I | GGWCC | 2 cut(s) | 97, 457 |
| BmeT110I | CYCGRG | 1 cut(s) | 16 |
| BmgT120I | GGNCC | 2 cut(s) | 97, 457 |
| BmiI | GGNNCC | 2 cut(s) | 376, 458 |
| BmsI | GCATC | 3 cut(s) | 16, 226, 298 |
| BpiI | GAAGAC | 1 cut(s) | 149 |
| BpuEI | CTTGAG | 1 cut(s) | 482 |
| BsaJI | CCNNGG | 1 cut(s) | 387 |
| BsaWI | WCCGGW | 1 cut(s) | 371 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 256 |
| Bse1I | ACTGG | 1 cut(s) | 90 |
| BseAI | TCCGGA | 1 cut(s) | 371 |
| BseDI | CCNNGG | 1 cut(s) | 387 |
| BseGI | GGATG | 1 cut(s) | 313 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 256 |
| BseMII | CTCAG | 1 cut(s) | 495 |
| BseNI | ACTGG | 1 cut(s) | 90 |
| BseRI | GAGGAG | 2 cut(s) | 39, 485 |
| BseXI | GCAGC | 1 cut(s) | 364 |
| BseYI | CCCAGC | 1 cut(s) | 53 |
| BsiHKCI | CYCGRG | 1 cut(s) | 16 |
| BsiSI | CCGG | 1 cut(s) | 372 |
| BslFI | GGGAC | 3 cut(s) | 301, 420, 470 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 256 |
| BsmAI | GTCTC | 1 cut(s) | 228 |
| BsmFI | GGGAC | 3 cut(s) | 301, 420, 470 |
| BsoBI | CYCGRG | 1 cut(s) | 16 |
| Bsp13I | TCCGGA | 1 cut(s) | 371 |
| Bsp143I | GATC | 3 cut(s) | 48, 295, 374 |
| BspACI | CCGC | 1 cut(s) | 451 |
| BspCNI | CTCAG | 1 cut(s) | 496 |
| BspEI | TCCGGA | 1 cut(s) | 371 |
| BspLI | GGNNCC | 2 cut(s) | 376, 458 |
| BspPI | GGATC | 4 cut(s) | 43, 303, 369, 382 |
| BsrI | ACTGG | 1 cut(s) | 90 |
| BssECI | CCNNGG | 1 cut(s) | 387 |
| BssMI | GATC | 3 cut(s) | 48, 295, 374 |
| BssT1I | CCWWGG | 1 cut(s) | 387 |
| Bst4CI | ACNGT | 2 cut(s) | 71, 400 |
| Bst6I | CTCTTC | 2 cut(s) | 251, 420 |
| BstC8I | GCNNGC | 2 cut(s) | 59, 350 |
| BstDEI | CTNAG | 1 cut(s) | 504 |
| BstF5I | GGATG | 1 cut(s) | 313 |
| BstKTI | GATC | 3 cut(s) | 51, 298, 377 |
| BstMAI | GTCTC | 1 cut(s) | 228 |
| BstMBI | GATC | 3 cut(s) | 48, 295, 374 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 133, 317 |
| BstV1I | GCAGC | 1 cut(s) | 364 |
| BstV2I | GAAGAC | 1 cut(s) | 149 |
| BstX2I | RGATCY | 1 cut(s) | 374 |
| BstYI | RGATCY | 1 cut(s) | 374 |
| BtsCI | GGATG | 1 cut(s) | 313 |
| Cac8I | GCNNGC | 2 cut(s) | 59, 350 |
| CaiI | CAGNNNCTG | 1 cut(s) | 355 |
| Cfr13I | GGNCC | 2 cut(s) | 97, 457 |
| CseI | GACGC | 1 cut(s) | 143 |
| Csp6I | GTAC | 2 cut(s) | 13, 472 |
| CviJI | RGCY | 5 cut(s) | 39, 355, 392, 421, 508 |
| CviKI_1 | RGCY | 5 cut(s) | 39, 355, 392, 421, 508 |
| CviQI | GTAC | 2 cut(s) | 13, 472 |
| DdeI | CTNAG | 1 cut(s) | 504 |
| DpnI | GATC | 3 cut(s) | 50, 297, 376 |
| DpnII | GATC | 3 cut(s) | 48, 295, 374 |
| DraIII | CACNNNGTG | 1 cut(s) | 256 |
| Eam1104I | CTCTTC | 2 cut(s) | 251, 420 |
| EarI | CTCTTC | 2 cut(s) | 251, 420 |
| Eco130I | CCWWGG | 1 cut(s) | 387 |
| Eco47I | GGWCC | 2 cut(s) | 97, 457 |
| Eco88I | CYCGRG | 1 cut(s) | 16 |
| EcoO109I | RGGNCCY | 1 cut(s) | 457 |
| EcoT14I | CCWWGG | 1 cut(s) | 387 |
| EcoT22I | ATGCAT | 1 cut(s) | 313 |
| ErhI | CCWWGG | 1 cut(s) | 387 |
| FaiI | YATR | 3 cut(s) | 47, 368, 395 |
| FaqI | GGGAC | 3 cut(s) | 301, 420, 470 |
| Fnu4HI | GCNGC | 1 cut(s) | 353 |
| FokI | GGATG | 1 cut(s) | 320 |
| Fsp4HI | GCNGC | 1 cut(s) | 353 |
| GluI | GCNGC | 1 cut(s) | 353 |
| GsaI | CCCAGC | 1 cut(s) | 57 |
| HapII | CCGG | 1 cut(s) | 372 |
| HgaI | GACGC | 1 cut(s) | 143 |
| HincII | GTYRAC | 1 cut(s) | 490 |
| HindII | GTYRAC | 1 cut(s) | 490 |
| HindIII | AAGCTT | 1 cut(s) | 419 |
| HinfI | GANTC | 1 cut(s) | 272 |
| HpaII | CCGG | 1 cut(s) | 372 |
| HphI | GGTGA | 1 cut(s) | 373 |
| Hpy166II | GTNNAC | 1 cut(s) | 490 |
| Hpy188I | TCNGA | 3 cut(s) | 271, 307, 505 |
| Hpy188III | TCNNGA | 2 cut(s) | 95, 372 |
| Hpy8I | GTNNAC | 1 cut(s) | 490 |
| HpyAV | CCTTC | 1 cut(s) | 87 |
| HpyCH4III | ACNGT | 2 cut(s) | 71, 400 |
| HpyCH4V | TGCA | 1 cut(s) | 311 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 133, 317 |
| HpyF3I | CTNAG | 1 cut(s) | 504 |
| Kpn2I | TCCGGA | 1 cut(s) | 371 |
| Kzo9I | GATC | 3 cut(s) | 48, 295, 374 |
| LmnI | GCTCC | 2 cut(s) | 4, 36 |
| LpnPI | CCDG | 8 cut(s) | 25, 67, 80, 103, 146, 362, 385, 473 |
| Lsp1109I | GCAGC | 1 cut(s) | 364 |
| LweI | GCATC | 3 cut(s) | 16, 226, 298 |
| MaeIII | GTNAC | 1 cut(s) | 71 |
| MalI | GATC | 3 cut(s) | 50, 297, 376 |
| MboI | GATC | 3 cut(s) | 48, 295, 374 |
| MboII | GAAGA | 6 cut(s) | 149, 152, 238, 424, 427, 437 |
| MfeI | CAATTG | 1 cut(s) | 437 |
| MflI | RGATCY | 1 cut(s) | 374 |
| MluCI | AATT | 2 cut(s) | 128, 437 |
| MmeI | TCCRAC | 2 cut(s) | 136, 190 |
| MnlI | CCTC | 9 cut(s) | 17, 20, 119, 241, 285, 397, 447, 503, 506 |
| Mph1103I | ATGCAT | 1 cut(s) | 313 |
| MroI | TCCGGA | 1 cut(s) | 371 |
| MseI | TTAA | 1 cut(s) | 443 |
| MspA1I | CMGCKG | 2 cut(s) | 355, 451 |
| MspI | CCGG | 1 cut(s) | 372 |
| MunI | CAATTG | 1 cut(s) | 437 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 133, 317 |
| NdeII | GATC | 3 cut(s) | 48, 295, 374 |
| NlaIV | GGNNCC | 2 cut(s) | 376, 458 |
| NsiI | ATGCAT | 1 cut(s) | 313 |
| PfeI | GAWTC | 1 cut(s) | 272 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 256 |
| PkrI | GCNGC | 1 cut(s) | 354 |
| PpuMI | RGGWCCY | 1 cut(s) | 457 |
| Psp5II | RGGWCCY | 1 cut(s) | 457 |
| PspFI | CCCAGC | 1 cut(s) | 53 |
| PspN4I | GGNNCC | 2 cut(s) | 376, 458 |
| PspPI | GGNCC | 2 cut(s) | 97, 457 |
| PspPPI | RGGWCCY | 1 cut(s) | 457 |
| PstNI | CAGNNNCTG | 1 cut(s) | 355 |
| PsuI | RGATCY | 1 cut(s) | 374 |
| PvuII | CAGCTG | 1 cut(s) | 355 |
| RsaI | GTAC | 2 cut(s) | 14, 473 |
| RsaNI | GTAC | 2 cut(s) | 13, 472 |
| SaqAI | TTAA | 1 cut(s) | 443 |
| SatI | GCNGC | 1 cut(s) | 353 |
| Sau3AI | GATC | 3 cut(s) | 48, 295, 374 |
| Sau96I | GGNCC | 2 cut(s) | 97, 457 |
| ScaI | AGTACT | 1 cut(s) | 14 |
| SetI | ASST | 6 cut(s) | 41, 111, 357, 423, 462, 495 |
| SfaNI | GCATC | 3 cut(s) | 16, 226, 298 |
| SinI | GGWCC | 2 cut(s) | 97, 457 |
| SmlI | CTYRAG | 1 cut(s) | 497 |
| SmoI | CTYRAG | 1 cut(s) | 497 |
| Sse9I | AATT | 2 cut(s) | 128, 437 |
| SsiI | CCGC | 1 cut(s) | 451 |
| StyI | CCWWGG | 1 cut(s) | 387 |
| TaaI | ACNGT | 2 cut(s) | 71, 400 |
| TaqI | TCGA | 2 cut(s) | 275, 339 |
| TasI | AATT | 2 cut(s) | 128, 437 |
| TatI | WGTACW | 2 cut(s) | 12, 471 |
| TfiI | GAWTC | 1 cut(s) | 272 |
| Tru1I | TTAA | 1 cut(s) | 443 |
| Tru9I | TTAA | 1 cut(s) | 443 |
| TseI | GCWGC | 1 cut(s) | 352 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 256 |
| VpaK11BI | GGWCC | 2 cut(s) | 97, 457 |
| ZrmI | AGTACT | 1 cut(s) | 14 |
| Zsp2I | ATGCAT | 1 cut(s) | 313 |