Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001578

Physical Location & Seq

Genomic Coordinates Forward (+)

10876724 .. 10879143

Gene Structure 2420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCTGAAAACGTCCCTGATCACCAAAGTACCAATGGTTTTTCATCTTCCGATTTCTTTGTTCCTGAAGAAGAAGCAGGCAAGAAGGTTGTTCTGTCTAAATTAGTGACTTTGATGCGTAAATTGTCAGAACAAGGAATCGATGCTCAAAACTGTCCTCCAGGAGTACGTAGTTGCTTGATATGTCCGAAGTGTGAAGTTGGAGACTCTGGAGAAAAAAGCTTGACTCTTTACATATACCCTGATGGTTCGTCAGCTAAATGGACTTGCAGGAGGAAGTGTGGGTTAAAAGGTGTACTACAGGTGGATGGTAAGTTGGTATCTAAAGATCCAATAGGGAAGGTTGAAAGAAAAATTACGGTGGAGAGTATAAAGCTAGAACCTCTCTGTGATGAGATTCAAGATTTTTTTGCTGCAAGAGCGATTTCAGGGAAAACACTCGAGAGAAATCGAGTTATGCAGAAAAGAATAGATGACGAGATTGTGATTGCTTTTACGTATTGGCAAAGAGGGGAGCTTGTGAGTTGCAAGTACCGATCTCTAACTAAGAAGTTCGTTCAGGAAAGGAATACACGGAAGATCTTGTATGGGCTTGATGACATAGAAGAAACATCTGAAATCATTATAGTTGAAGGGGAACCAGATAAACTTGCAATGGAAGAGGCTGGTTTTTTCAATTGTGTGTCTGTTCCTGATGGAGCTCCAGAGACGGTTTCTTCAAAGGAAATTCCATCTGAATCCAAGGACACGGCGTTTAAGTACATATGGAATTGCAATGACTATCTTAAAAAGGCGTCTCGGATTGTTATTGCTACTGACGGAGATGGACCTGGTCAAGCTCTAGCGGAAGAACTTGCACGGCGTTTGGGGAAAGAAAGATGTTGGCTTGTCAAATGGCCGAAGAAAAGTGAAGATGAACATTTCAAAGATGCAAACGAGGTGCTTATGTCTAAGGGACCTCATTTACTCAAGGAAGCTATTCTAAATGCTGAGCCTTACCCTTTGAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0004003 GO:0004386 GO:0005488 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0016043 GO:0016070 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032392 GO:0032508 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051276 GO:0055086 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0090407 GO:0097159 GO:0097747 GO:0140097 GO:0140098 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaB_C Toprim_4

Protein Analysis

337

Amino Acids

37.81

Weight (kDa)

5.9

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Toprim_4	PF13662	198 - 284	1.7e-12	Toprim domain
Toprim	PF01751	199 - 284	4.9e-08	Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30660 AT1G30660 AT1G30660 AT1G30680
fragaria_vesca	FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11220 FvH4_3g11220
malus_domestica	MD05G1265600.v1.1 MD10G1243800.v1.1
prunus_persica	Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099900_v2.0.a1 Prupe.4G099900_v2.0.a1
pyrus_communis	pycom05g24970 pycom10g20390
rosa_chinensis	RchiOBHm_Chr5g0018141 RchiOBHm_Chr5g0018171
rosa_laevigata	RLG00000032341 RLG00000032343
rosa_multiflora	Rmu_sc0006594.1_g000001 Rmu_sc0013020.1_g000001 Rmu_sc0013020.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059480 Rroxscaffold_1G00059500
rosa_rugosa	Rorug05G0040700 Rorug05G0040900
rosa_samantha	Rh5AG133500 Rh5AG133800 Rh5BG131900 Rh5BG132300 Rh5CG144200 Rh5CG144500 Rh5DG133900 Rh5DG134200
rosa_wichuraiana	Rw5G011640 Rw5G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	845
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	896
AcsI	RAATTY	1 cut(s)	726
AcuI	CTGAAG	1 cut(s)	87
AcyI	GRCGYC	1 cut(s)	794
AfaI	GTAC	5 cut(s)	31, 168, 297, 533, 761
AgsI	TTSAA	7 cut(s)	347, 401, 632, 676, 720, 925, 1006
AjnI	CCWGG	2 cut(s)	160, 829
AluBI	AGCT	7 cut(s)	222, 257, 376, 517, 701, 839, 977
AluI	AGCT	7 cut(s)	222, 257, 376, 517, 701, 839, 977
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	3 cut(s)	198, 701, 801
AlwI	GGATC	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	896
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	1 cut(s)	726
Asp700I	GAANNNNTTC	1 cut(s)	978
AspS9I	GGNCC	2 cut(s)	827, 956
AsuHPI	GGTGA	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	2 cut(s)	827, 956
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BanII	GRGCYC	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	5 cut(s)	239, 302, 689, 739, 818
BceAI	ACGGC	2 cut(s)	765, 875
BciT130I	CCWGG	2 cut(s)	162, 831
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	198, 701, 801
BfaI	CTAG	2 cut(s)	377, 842
BfmI	CTRYAG	1 cut(s)	299
BglII	AGATCT	1 cut(s)	579
BisI	GCNGC	1 cut(s)	414
BlpI	GCTNAGC	1 cut(s)	990
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	2 cut(s)	162, 831
Bme18I	GGWCC	2 cut(s)	827, 956
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	827, 956
BmiI	GGNNCC	2 cut(s)	639, 957
BmrFI	CCNGG	2 cut(s)	162, 831
BmsI	GCATC	3 cut(s)	105, 133, 919
BpmI	CTGGAG	3 cut(s)	144, 231, 687
Bpu1102I	GCTNAGC	1 cut(s)	990
BpuEI	CTTGAG	1 cut(s)	953
Bsa29I	ATCGAT	1 cut(s)	141
BsaAI	YACGTR	2 cut(s)	170, 498
BsaHI	GRCGYC	1 cut(s)	794
BsaJI	CCNNGG	1 cut(s)	741
BsaXI	ACNNNNNCTCC	2 cut(s)	265, 295
Bse3DI	GCAATG	2 cut(s)	660, 781
BseBI	CCWGG	2 cut(s)	162, 831
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	741
BseGI	GGATG	1 cut(s)	313
BseMI	GCAATG	2 cut(s)	660, 781
BseMII	CTCAG	1 cut(s)	981
BseXI	GCAGC	1 cut(s)	400
BshFI	GGCC	1 cut(s)	898
BshVI	ATCGAT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	703
BsiHKCI	CYCGRG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	969
BsmAI	GTCTC	3 cut(s)	198, 701, 801
BsmBI	CGTCTC	2 cut(s)	701, 801
BsmFI	GGGAC	1 cut(s)	969
BsnI	GGCC	1 cut(s)	898
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	703
Bsp143I	GATC	4 cut(s)	19, 328, 536, 579
Bsp1720I	GCTNAGC	1 cut(s)	990
BspACI	CCGC	1 cut(s)	845
BspANI	GGCC	1 cut(s)	898
BspCNI	CTCAG	1 cut(s)	982
BspDI	ATCGAT	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	1010
BspLI	GGNNCC	2 cut(s)	639, 957
BspPI	GGATC	1 cut(s)	323
BsrDI	GCAATG	2 cut(s)	660, 781
BssECI	CCNNGG	1 cut(s)	741
BssMI	GATC	4 cut(s)	19, 328, 536, 579
BssNI	GRCGYC	1 cut(s)	794
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	162, 831
Bst4CI	ACNGT	3 cut(s)	155, 361, 712
Bst6I	CTCTTC	1 cut(s)	654
BstACI	GRCGYC	1 cut(s)	794
BstBAI	YACGTR	2 cut(s)	170, 498
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	3 cut(s)	546, 951, 990
BstF5I	GGATG	1 cut(s)	313
BstKTI	GATC	4 cut(s)	22, 331, 539, 582
BstMAI	GTCTC	3 cut(s)	198, 701, 801
BstMBI	GATC	4 cut(s)	19, 328, 536, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	2 cut(s)	162, 831
BstSCI	CCNGG	2 cut(s)	160, 829
BstSFI	CTRYAG	1 cut(s)	299
BstSNI	TACGTA	2 cut(s)	170, 498
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	2 cut(s)	328, 579
BstYI	RGATCY	2 cut(s)	328, 579
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	898
BsuTUI	ATCGAT	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	79
CciI	TCATGA	1 cut(s)	1010
Cfr13I	GGNCC	2 cut(s)	827, 956
ClaI	ATCGAT	1 cut(s)	141
CseI	GACGC	1 cut(s)	783
CsiI	ACCWGGT	1 cut(s)	829
Csp6I	GTAC	5 cut(s)	30, 167, 296, 532, 760
CviAII	CATG	1 cut(s)	1011
CviQI	GTAC	5 cut(s)	30, 167, 296, 532, 760
DdeI	CTNAG	3 cut(s)	546, 951, 990
DpnI	GATC	4 cut(s)	21, 330, 538, 581
DpnII	GATC	4 cut(s)	19, 328, 536, 579
EaeI	YGGCCR	1 cut(s)	896
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Ecl136II	GAGCTC	1 cut(s)	701
Eco105I	TACGTA	2 cut(s)	170, 498
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	703
Eco47I	GGWCC	2 cut(s)	827, 956
Eco53kI	GAGCTC	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	440
EcoICRI	GAGCTC	1 cut(s)	701
EcoO109I	RGGNCCY	1 cut(s)	956
EcoRII	CCWGG	2 cut(s)	160, 829
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	703
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	2 cut(s)	701, 801
FaeI	CATG	1 cut(s)	1014
FaqI	GGGAC	1 cut(s)	969
FatI	CATG	1 cut(s)	1010
FauNDI	CATATG	1 cut(s)	764
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	703
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	2 cut(s)	377, 842
GluI	GCNGC	1 cut(s)	414
GsuI	CTGGAG	3 cut(s)	144, 231, 687
HaeIII	GGCC	1 cut(s)	898
HgaI	GACGC	1 cut(s)	783
Hin1I	GRCGYC	1 cut(s)	794
Hin1II	CATG	1 cut(s)	1014
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	5 cut(s)	138, 206, 226, 397, 737
HphI	GGTGA	1 cut(s)	14
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	7 cut(s)	7, 52, 130, 189, 616, 736, 801
Hpy188III	TCNNGA	8 cut(s)	65, 210, 401, 442, 560, 692, 704, 1011
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	3 cut(s)	79, 334, 626
HpyCH4III	ACNGT	3 cut(s)	155, 361, 712
HpyCH4IV	ACGT	3 cut(s)	12, 169, 497
HpyCH4V	TGCA	8 cut(s)	270, 416, 460, 528, 653, 774, 857, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	3 cut(s)	546, 951, 990
HpySE526I	ACGT	3 cut(s)	12, 169, 497
Hsp92I	GRCGYC	1 cut(s)	794
Hsp92II	CATG	1 cut(s)	1014
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	19, 328, 536, 579
LmnI	GCTCC	3 cut(s)	514, 698, 706
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	3 cut(s)	105, 133, 919
MabI	ACCWGGT	1 cut(s)	829
MaeI	CTAG	2 cut(s)	377, 842
MaeII	ACGT	3 cut(s)	12, 169, 497
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	21, 330, 538, 581
MboI	GATC	4 cut(s)	19, 328, 536, 579
MfeI	CAATTG	1 cut(s)	676
MflI	RGATCY	2 cut(s)	328, 579
MhlI	GDGCHC	1 cut(s)	703
MluCI	AATT	6 cut(s)	101, 122, 354, 676, 726, 769
MlyI	GAGTC	2 cut(s)	200, 220
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	7 cut(s)	168, 267, 393, 503, 655, 931, 969
MroXI	GAANNNNTTC	1 cut(s)	978
MseI	TTAA	3 cut(s)	287, 756, 786
MspR9I	CCNGG	2 cut(s)	162, 831
MunI	CAATTG	1 cut(s)	676
MvaI	CCWGG	2 cut(s)	162, 831
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeI	CATATG	1 cut(s)	764
NdeII	GATC	4 cut(s)	19, 328, 536, 579
NlaIII	CATG	1 cut(s)	1014
NlaIV	GGNNCC	2 cut(s)	639, 957
NmuCI	GTSAC	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	440
PagI	TCATGA	1 cut(s)	1010
PdmI	GAANNNNTTC	1 cut(s)	978
PfeI	GAWTC	3 cut(s)	138, 397, 737
PflFI	GACNNNGTC	1 cut(s)	831
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	2 cut(s)	200, 220
PpsI	GAGTC	2 cut(s)	200, 220
Ppu21I	YACGTR	2 cut(s)	170, 498
PpuMI	RGGWCCY	1 cut(s)	956
Psp124BI	GAGCTC	1 cut(s)	703
Psp5II	RGGWCCY	1 cut(s)	956
Psp6I	CCWGG	2 cut(s)	160, 829
PspGI	CCWGG	2 cut(s)	160, 829
PspN4I	GGNNCC	2 cut(s)	639, 957
PspPI	GGNCC	2 cut(s)	827, 956
PspPPI	RGGWCCY	1 cut(s)	956
PsuI	RGATCY	2 cut(s)	328, 579
PsyI	GACNNNGTC	1 cut(s)	831
RsaI	GTAC	5 cut(s)	31, 168, 297, 533, 761
RsaNI	GTAC	5 cut(s)	30, 167, 296, 532, 760
SacI	GAGCTC	1 cut(s)	703
SaqAI	TTAA	3 cut(s)	287, 756, 786
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	4 cut(s)	19, 328, 536, 579
Sau96I	GGNCC	2 cut(s)	827, 956
SchI	GAGTC	2 cut(s)	200, 220
ScrFI	CCNGG	2 cut(s)	162, 831
SduI	GDGCHC	1 cut(s)	703
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	3 cut(s)	105, 133, 919
SfcI	CTRYAG	1 cut(s)	299
Sfr274I	CTCGAG	1 cut(s)	440
SinI	GGWCC	2 cut(s)	827, 956
SlaI	CTCGAG	1 cut(s)	440
SmlI	CTYRAG	2 cut(s)	440, 968
SmoI	CTYRAG	2 cut(s)	440, 968
SnaBI	TACGTA	2 cut(s)	170, 498
Sse9I	AATT	6 cut(s)	101, 122, 354, 676, 726, 769
SsiI	CCGC	1 cut(s)	845
SspMI	CTAG	2 cut(s)	377, 842
SstI	GAGCTC	1 cut(s)	703
StyD4I	CCNGG	2 cut(s)	160, 829
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	3 cut(s)	155, 361, 712
TaiI	ACGT	3 cut(s)	15, 172, 500
TaqI	TCGA	3 cut(s)	141, 441, 451
TasI	AATT	6 cut(s)	101, 122, 354, 676, 726, 769
TatI	WGTACW	2 cut(s)	295, 759
TfiI	GAWTC	3 cut(s)	138, 397, 737
Tru1I	TTAA	3 cut(s)	287, 756, 786
Tru9I	TTAA	3 cut(s)	287, 756, 786
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	33, 930
TspGWI	ACGGA	2 cut(s)	589, 834
Tth111I	GACNNNGTC	1 cut(s)	831
VpaK11BI	GGWCC	2 cut(s)	827, 956
XapI	RAATTY	1 cut(s)	726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XhoI	CTCGAG	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	978
XspI	CTAG	2 cut(s)	377, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.