Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001578

Physical Location & Seq

Genomic Coordinates Forward (+)

6604717 .. 6614799

Gene Structure 10083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11220.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGCGCTTTCTTCTTCATCGACCTCTTCATAAGCTTTCAGCCTTATCCTCAAGTACTTCTCTTCTTATGGCTTCCAAGCAACTCCTAAAGTCCACACCTTTCACAAACCCATCTCCTCCTTCTCCACAAACTCACCTCTTTCACTCTCACAGACTTGTTTTCTCTGCATTTCCGCCCAAACCCACCTCTAAAGCTCGACCCTTTTGCCTCAGGACTAATGGGTATTCTTATGCTTCACGTGCCACTGTGAAAGCCCCAAAACCAGTTGATTTGGAGATAACAGATGAGCAGAGATGTGAGTCTCTGACGAAAAAGTTGAAGGAGATTGGCATTGATGATGAGATATGTGAACCGGCGCAGTACGGCCACTTGATCTGTCCAATGTGCAAAGGTGGTGATTCAGAGGAAAAAAGCTTATCCATTTTTATAGAAAAAGATTGGAGTTATGCTACTTGGCAGTGCCACCGCCGAAAATGTGATTGGAAAGGTAGAACAATGGCTTTTGCAGGAAGCAAGTCTTCTTATAAAAAATCAAAGAATAGCACGACAGATAAGACAAAAAGGGAAATCACAGTGGAAAGTTTAGGAGTGGAACCACTTTGTGAGGAGGTTCTTGCATTTTTTTCGGAGCGAGGAATATCAAGGGAAACAGTGGCGAGGAATAAAGTAATGCAAAAGCGTTGTTCCATAACAGATCAGATTTCTATTGCATTTACTTATTGGAGGAATGGAAAGCTGATTAGTTGCAAGTATCGAGACATCAACAAGAAATTCTGGCAGGAGAAGGATACTGAAAGGATTTTTTACGGGCTGGATGATATAAAGGATACAAATGATATCATCATTGTAGAAGGCGAGATGGATAAGCTTGCAATGGAAGAAGCTGGCTATCGTAATTGCGTAAGTGTTCCTGATGGTGCTCCTCCCAAGGCTTCTCCTCCTGATAAAGATGTGCCACCTGAAGAGCAGGATACAAAGTATCAATTTCTGTGGAACTGCAAAGAGTACTTAAAGAAGGAATCACGCATTATTCTTGCCACTGATGGAGATGGGCCTGGCCAAGCCCTAGCTGAAGAACTTGCCCGCCGCCTTGGAAGAGAAAGATGCTGGAGAGTCAGCTGGCCAAAGAAAAACAACCAGGTTGAACACTTCAAGGATGCAAATGAGGTTCTCATGTATTTGGGACCTGATGTATTGAAGGAAGTAATTGAGAATGCTGAGTTATATCCTATACGTGGATTGTTCAGATTTCAAGATTACTTTGATGAAATTAATGCATATTACCATCGGACGTATAAACATGATTGTGGTGTCAAAACTGGGTGGAGAGATCTGGATGAGTTATACAATGTTGTCCCGGGTGAGTTGACTATAGTAACAGGGGTTCCTAATTCAGGCAAGAGTGAGTGGATTGATGCTCTCTTGTGCAATCTCTATGAAAGTCATGGTTGGAAGTTTGCACTTTGTTCTATGGAAAACAAGGTTAGGGAGCATGCACGAAAGCTGCTGGAGAAACACATACAGAAGCCTTTCTTCGATGGACGCTATGGTGGTCCTGCTGAACGAATGAGTGTTGAAGAATTTGAGCAAGGGAAACAATGGTTAAATGAGACATTTCACCTCATAAGGTGTGAGGATGATTCTCTTCCAAATATCAAATGGGTTCTTGATCTTGCACGAGCAGCAGTACTTAGGCATGGGGTGCGTGGACTTGTAATTGATCCTTACAACGAGCTTGATCATCAACGCCCACCAAACCAGACGGAAACAGAGTATGTAAGTCAGATGCTTACCAATGTCAAACGGTTTGCTCAGCATCATGCTTGTCATGTTTGGTTTGTAGCACATCCCAGACAGTTGCACCATTGGGTAGGGGGTCCTCCTAATCTTTATGATATAAGTGGAAGTGCACATTTCATAAACAAATGTGACAACGGAATTGTAATTCATCGTAATCGGGATCCAGATGCTGGGGAGCTTGATAAAGTACAGGTTTGTGTTCGTAAGGTACGGAATAAAGTCGCAGGGACCATAGGTGACGCCTATTTGACATATGATAGGGCAACTGGTCGATATATGGATATTCCGAAAGCAAACGAGGGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0004003 GO:0004386 GO:0005488 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0016043 GO:0016070 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032392 GO:0032508 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051276 GO:0055086 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0090407 GO:0097159 GO:0097747 GO:0140097 GO:0140098 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaB_C Toprim_4

Protein Analysis

703

Amino Acids

80.73

Weight (kDa)

8.32

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Toprim_4	PF13662	279 - 365	7.1e-13	Toprim domain
Toprim	PF01751	280 - 362	1.8e-07	Toprim domain
DnaB_C	PF03796	437 - 611	2e-06	DnaB-like helicase C terminal domain
AAA_25	PF13481	451 - 619	3.7e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30660 AT1G30660 AT1G30660 AT1G30680
fragaria_vesca	FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11220 FvH4_3g11220
malus_domestica	MD05G1265600.v1.1 MD10G1243800.v1.1
prunus_persica	Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099900_v2.0.a1 Prupe.4G099900_v2.0.a1
pyrus_communis	pycom05g24970 pycom10g20390
rosa_chinensis	RchiOBHm_Chr5g0018141 RchiOBHm_Chr5g0018171
rosa_laevigata	RLG00000032341 RLG00000032343
rosa_multiflora	Rmu_sc0006594.1_g000001 Rmu_sc0013020.1_g000001 Rmu_sc0013020.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059480 Rroxscaffold_1G00059500
rosa_rugosa	Rorug05G0040700 Rorug05G0040900
rosa_samantha	Rh5AG133500 Rh5AG133800 Rh5BG131900 Rh5BG132300 Rh5CG144200 Rh5CG144500 Rh5DG133900 Rh5DG134200
rosa_wichuraiana	Rw5G011640 Rw5G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AccB7I	CCANNNNNTGG	1 cut(s)	1970
AciI	CCGC	4 cut(s)	173, 466, 1084, 1087
AclWI	GGATC	3 cut(s)	1715, 1955, 1968
AcoI	YGGCCR	3 cut(s)	364, 1057, 1121
AcsI	RAATTY	2 cut(s)	770, 1580
AcuI	CTGAAG	2 cut(s)	981, 1092
AcvI	CACGTG	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	2040
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	6 cut(s)	55, 362, 1007, 1689, 1989, 2010
AfiI	CCNNNNNNNGG	3 cut(s)	1235, 1394, 1970
AgsI	TTSAA	6 cut(s)	319, 1145, 1153, 1198, 1253, 1577
AjnI	CCWGG	2 cut(s)	1054, 1137
AjuI	GAANNNNNNNTTGG	2 cut(s)	463, 495
Alw21I	GWGCWC	2 cut(s)	922, 1912
Alw26I	GTCTC	3 cut(s)	306, 750, 1604
Alw44I	GTGCAC	1 cut(s)	1908
AlwI	GGATC	3 cut(s)	1715, 1955, 1968
AlwNI	CAGNNNCTG	1 cut(s)	1970
Ama87I	CYCGRG	1 cut(s)	1357
AoxI	GGCC	4 cut(s)	364, 1052, 1057, 1121
ApaLI	GTGCAC	1 cut(s)	1908
ApeKI	GCWGC	2 cut(s)	1504, 1682
ApoI	RAATTY	2 cut(s)	770, 1580
AseI	ATTAAT	1 cut(s)	1272
Asp700I	GAANNNNTTC	1 cut(s)	1529
AspLEI	GCGC	2 cut(s)	6, 358
AspS9I	GGNCC	5 cut(s)	1052, 1184, 1553, 1877, 2028
AsuC2I	CCSGG	2 cut(s)	1358, 1359
AsuHPI	GGTGA	5 cut(s)	125, 407, 1373, 1610, 2048
AvaI	CYCGRG	1 cut(s)	1357
AvaII	GGWCC	4 cut(s)	1184, 1553, 1877, 2028
AxyI	CCTNAGG	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	1912
BalI	TGGCCA	2 cut(s)	1059, 1123
BamHI	GGATCC	1 cut(s)	1960
BauI	CACGAG	1 cut(s)	1677
BbrPI	CACGTG	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	2 cut(s)	922, 1912
BbvI	GCAGC	2 cut(s)	1491, 1694
BccI	CCATC	7 cut(s)	118, 853, 908, 1037, 1043, 1293, 1532
BceAI	ACGGC	1 cut(s)	379
BcgI	CGANNNNNNTGC	4 cut(s)	186, 220, 606, 640
BciT130I	CCWGG	2 cut(s)	1056, 1139
BciVI	GTATCC	3 cut(s)	781, 820, 964
BclI	TGATCA	1 cut(s)	1738
BcnI	CCSGG	2 cut(s)	1358, 1359
BcoDI	GTCTC	3 cut(s)	306, 750, 1604
BfaI	CTAG	1 cut(s)	1067
BfmI	CTRYAG	1 cut(s)	1371
BfuI	GTATCC	3 cut(s)	781, 820, 964
BglII	AGATCT	1 cut(s)	1330
BisI	GCNGC	3 cut(s)	1087, 1505, 1683
BlpI	GCTNAGC	1 cut(s)	1812
BlsI	GCNGC	3 cut(s)	1088, 1506, 1684
BmcAI	AGTACT	3 cut(s)	55, 1007, 1689
Bme1390I	CCNGG	4 cut(s)	1056, 1139, 1358, 1359
Bme18I	GGWCC	4 cut(s)	1184, 1553, 1877, 2028
BmeT110I	CYCGRG	1 cut(s)	1357
BmgT120I	GGNCC	5 cut(s)	1052, 1184, 1553, 1877, 2028
BmiI	GGNNCC	6 cut(s)	594, 1185, 1386, 1878, 1962, 2029
BmrFI	CCNGG	4 cut(s)	1056, 1139, 1358, 1359
BmrI	ACTGGG	1 cut(s)	1329
BmsI	GCATC	6 cut(s)	1094, 1147, 1405, 1776, 1825, 1957
BmuI	ACTGGG	1 cut(s)	1329
BpiI	GAAGAC	1 cut(s)	510
BpmI	CTGGAG	2 cut(s)	1129, 1529
Bpu1102I	GCTNAGC	1 cut(s)	1812
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	1358, 1359
BsaAI	YACGTR	2 cut(s)	239, 1235
BsaHI	GRCGYC	1 cut(s)	2040
BsaJI	CCNNGG	3 cut(s)	927, 1090, 1357
Bsc4I	CCNNNNNNNGG	3 cut(s)	1235, 1394, 1970
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	3 cut(s)	263, 1324, 2071
Bse21I	CCTNAGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	879
BseBI	CCWGG	2 cut(s)	1056, 1139
BseDI	CCNNGG	3 cut(s)	927, 1090, 1357
BseGI	GGATG	5 cut(s)	820, 1162, 1342, 1642, 1846
BseLI	CCNNNNNNNGG	3 cut(s)	1235, 1394, 1970
BseMI	GCAATG	1 cut(s)	879
BseMII	CTCAG	3 cut(s)	223, 1209, 1826
BseNI	ACTGG	3 cut(s)	263, 1324, 2071
BseRI	GAGGAG	4 cut(s)	105, 620, 912, 927
BseSI	GKGCMC	1 cut(s)	1912
BseXI	GCAGC	2 cut(s)	1491, 1694
BseYI	CCCAGC	1 cut(s)	1970
BshFI	GGCC	4 cut(s)	366, 1054, 1059, 1123
BsiHKAI	GWGCWC	2 cut(s)	922, 1912
BsiHKCI	CYCGRG	1 cut(s)	1357
BsiSI	CCGG	2 cut(s)	353, 1358
BslFI	GGGAC	3 cut(s)	1197, 1340, 2041
BslI	CCNNNNNNNGG	3 cut(s)	1235, 1394, 1970
BsmAI	GTCTC	3 cut(s)	306, 750, 1604
BsmFI	GGGAC	3 cut(s)	1197, 1340, 2041
BsmI	GAATGC	1 cut(s)	1219
BsnI	GGCC	4 cut(s)	366, 1054, 1059, 1123
BsoBI	CYCGRG	1 cut(s)	1357
Bsp1286I	GDGCHC	2 cut(s)	922, 1912
Bsp143I	GATC	7 cut(s)	372, 694, 1330, 1669, 1720, 1738, 1960
Bsp1720I	GCTNAGC	1 cut(s)	1812
BspACI	CCGC	4 cut(s)	173, 466, 1084, 1087
BspANI	GGCC	4 cut(s)	366, 1054, 1059, 1123
BspCNI	CTCAG	3 cut(s)	222, 1210, 1825
BspLI	GGNNCC	6 cut(s)	594, 1185, 1386, 1878, 1962, 2029
BspPI	GGATC	3 cut(s)	1715, 1955, 1968
BspQI	GCTCTTC	1 cut(s)	957
BsrDI	GCAATG	1 cut(s)	879
BsrFI	RCCGGY	1 cut(s)	352
BsrI	ACTGG	3 cut(s)	263, 1324, 2071
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	3 cut(s)	927, 1090, 1357
BssMI	GATC	7 cut(s)	372, 694, 1330, 1669, 1720, 1738, 1960
BssNI	GRCGYC	1 cut(s)	2040
BssSI	CACGAG	1 cut(s)	1677
BssT1I	CCWWGG	2 cut(s)	927, 1090
Bst2BI	CACGAG	1 cut(s)	1677
Bst2UI	CCWGG	2 cut(s)	1056, 1139
Bst4CI	ACNGT	5 cut(s)	247, 574, 652, 1806, 1857
Bst6I	CTCTTC	5 cut(s)	30, 66, 957, 1090, 1650
BstACI	GRCGYC	1 cut(s)	2040
BstAPI	GCANNNNNTGC	1 cut(s)	1702
BstBAI	YACGTR	2 cut(s)	239, 1235
BstC8I	GCNNGC	5 cut(s)	870, 886, 1084, 1121, 1494
BstDEI	CTNAG	4 cut(s)	209, 1218, 1691, 1812
BstENI	CCTNNNNNAGG	1 cut(s)	1392
BstF5I	GGATG	5 cut(s)	820, 1162, 1342, 1642, 1846
BstHHI	GCGC	2 cut(s)	6, 358
BstKTI	GATC	7 cut(s)	375, 697, 1333, 1672, 1723, 1741, 1963
BstMAI	GTCTC	3 cut(s)	306, 750, 1604
BstMBI	GATC	7 cut(s)	372, 694, 1330, 1669, 1720, 1738, 1960
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 1682, 1702
BstNI	CCWGG	2 cut(s)	1056, 1139
BstNSI	RCATGY	1 cut(s)	1496
BstSCI	CCNGG	4 cut(s)	1054, 1137, 1356, 1357
BstSFI	CTRYAG	1 cut(s)	1371
BstSLI	GKGCMC	1 cut(s)	1912
BstV1I	GCAGC	2 cut(s)	1491, 1694
BstV2I	GAAGAC	1 cut(s)	510
BstX2I	RGATCY	2 cut(s)	1330, 1960
BstYI	RGATCY	2 cut(s)	1330, 1960
Bsu36I	CCTNAGG	1 cut(s)	209
BsuI	GTATCC	3 cut(s)	781, 820, 964
BsuRI	GGCC	4 cut(s)	366, 1054, 1059, 1123
BtsCI	GGATG	5 cut(s)	820, 1162, 1342, 1642, 1846
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	5 cut(s)	243, 464, 579, 657, 1038
Cac8I	GCNNGC	5 cut(s)	870, 886, 1084, 1121, 1494
CaiI	CAGNNNCTG	1 cut(s)	1970
CfoI	GCGC	2 cut(s)	6, 358
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	5 cut(s)	1052, 1184, 1553, 1877, 2028
Cfr9I	CCCGGG	1 cut(s)	1357
CseI	GACGC	2 cut(s)	1551, 2048
CsiI	ACCWGGT	1 cut(s)	1137
Csp6I	GTAC	6 cut(s)	54, 361, 1006, 1688, 1988, 2009
CspCI	CAANNNNNGTGG	2 cut(s)	971, 1006
CviAII	CATG	7 cut(s)	1174, 1301, 1445, 1493, 1697, 1820, 1829
CviQI	GTAC	6 cut(s)	54, 361, 1006, 1688, 1988, 2009
DdeI	CTNAG	4 cut(s)	209, 1218, 1691, 1812
DpnI	GATC	7 cut(s)	374, 696, 1332, 1671, 1722, 1740, 1962
DpnII	GATC	7 cut(s)	372, 694, 1330, 1669, 1720, 1738, 1960
DraIII	CACNNNGTG	1 cut(s)	602
EaeI	YGGCCR	3 cut(s)	364, 1057, 1121
Eam1104I	CTCTTC	5 cut(s)	30, 66, 957, 1090, 1650
EarI	CTCTTC	5 cut(s)	30, 66, 957, 1090, 1650
EciI	GGCGGA	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	927, 1090
Eco32I	GATATC	1 cut(s)	838
Eco47I	GGWCC	4 cut(s)	1184, 1553, 1877, 2028
Eco57I	CTGAAG	2 cut(s)	981, 1092
Eco72I	CACGTG	1 cut(s)	239
Eco81I	CCTNAGG	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	1357
EcoNI	CCTNNNNNAGG	1 cut(s)	1392
EcoO109I	RGGNCCY	2 cut(s)	1184, 1877
EcoRII	CCWGG	2 cut(s)	1054, 1137
EcoRV	GATATC	1 cut(s)	838
EcoT14I	CCWWGG	2 cut(s)	927, 1090
EcoT22I	ATGCAT	1 cut(s)	1279
ErhI	CCWWGG	2 cut(s)	927, 1090
FaeI	CATG	7 cut(s)	1177, 1304, 1448, 1496, 1700, 1823, 1832
FalI	AAGNNNNNCTT	4 cut(s)	502, 534, 1517, 1549
FaqI	GGGAC	3 cut(s)	1197, 1340, 2041
FatI	CATG	7 cut(s)	1173, 1300, 1444, 1492, 1696, 1819, 1828
FauI	CCCGC	1 cut(s)	1091
FauNDI	CATATG	1 cut(s)	2053
FbaI	TGATCA	1 cut(s)	1738
Fnu4HI	GCNGC	3 cut(s)	1087, 1505, 1683
FokI	GGATG	5 cut(s)	827, 1169, 1349, 1649, 1833
Fsp4HI	GCNGC	3 cut(s)	1087, 1505, 1683
FspBI	CTAG	1 cut(s)	1067
GlaI	GCGC	2 cut(s)	5, 357
GluI	GCNGC	3 cut(s)	1087, 1505, 1683
GsaI	CCCAGC	1 cut(s)	1974
GsuI	CTGGAG	2 cut(s)	1129, 1529
HaeIII	GGCC	4 cut(s)	366, 1054, 1059, 1123
HapII	CCGG	2 cut(s)	353, 1358
HgaI	GACGC	2 cut(s)	1551, 2048
HhaI	GCGC	2 cut(s)	6, 358
Hin1I	GRCGYC	1 cut(s)	2040
Hin1II	CATG	7 cut(s)	1177, 1304, 1448, 1496, 1700, 1823, 1832
Hin6I	GCGC	2 cut(s)	4, 356
HinP1I	GCGC	2 cut(s)	4, 356
HincII	GTYRAC	1 cut(s)	1368
HindII	GTYRAC	1 cut(s)	1368
HindIII	AAGCTT	3 cut(s)	32, 412, 866
HinfI	GANTC	5 cut(s)	299, 398, 1019, 1113, 1640
HpaII	CCGG	2 cut(s)	353, 1358
HphI	GGTGA	5 cut(s)	125, 407, 1373, 1610, 2048
Hpy166II	GTNNAC	5 cut(s)	93, 350, 1368, 1709, 1910
Hpy188I	TCNGA	8 cut(s)	306, 403, 628, 699, 1247, 1290, 1785, 2088
Hpy188III	TCNNGA	9 cut(s)	211, 755, 911, 941, 1253, 1334, 1667, 1958, 1964
Hpy8I	GTNNAC	5 cut(s)	93, 350, 1368, 1709, 1910
HpyAV	CCTTC	6 cut(s)	129, 313, 778, 845, 1009, 1192
HpyCH4III	ACNGT	5 cut(s)	247, 574, 652, 1806, 1857
HpyCH4IV	ACGT	3 cut(s)	238, 1234, 1292
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 1682, 1702
HpyF3I	CTNAG	4 cut(s)	209, 1218, 1691, 1812
HpySE526I	ACGT	3 cut(s)	238, 1234, 1292
Hsp92I	GRCGYC	1 cut(s)	2040
Hsp92II	CATG	7 cut(s)	1177, 1304, 1448, 1496, 1700, 1823, 1832
HspAI	GCGC	2 cut(s)	4, 356
Ksp22I	TGATCA	1 cut(s)	1738
Kzo9I	GATC	7 cut(s)	372, 694, 1330, 1669, 1720, 1738, 1960
LguI	GCTCTTC	1 cut(s)	957
LmnI	GCTCC	4 cut(s)	628, 925, 1489, 1975
Lsp1109I	GCAGC	2 cut(s)	1491, 1694
LweI	GCATC	6 cut(s)	1094, 1147, 1405, 1776, 1825, 1957
MabI	ACCWGGT	1 cut(s)	1137
MaeI	CTAG	1 cut(s)	1067
MaeII	ACGT	3 cut(s)	238, 1234, 1292
MaeIII	GTNAC	3 cut(s)	1375, 1928, 2036
MalI	GATC	7 cut(s)	374, 696, 1332, 1671, 1722, 1740, 1962
MboI	GATC	7 cut(s)	372, 694, 1330, 1669, 1720, 1738, 1960
MflI	RGATCY	2 cut(s)	1330, 1960
MhlI	GDGCHC	2 cut(s)	922, 1912
MlsI	TGGCCA	2 cut(s)	1059, 1123
MluNI	TGGCCA	2 cut(s)	1059, 1123
MlyI	GAGTC	2 cut(s)	308, 1122
MmeI	TCCRAC	1 cut(s)	1430
Mox20I	TGGCCA	2 cut(s)	1059, 1123
Mph1103I	ATGCAT	1 cut(s)	1279
MroXI	GAANNNNTTC	1 cut(s)	1529
MscI	TGGCCA	2 cut(s)	1059, 1123
MseI	TTAA	3 cut(s)	1010, 1272, 1604
MslI	CAYNNNNRTG	1 cut(s)	1305
Msp20I	TGGCCA	2 cut(s)	1059, 1123
MspA1I	CMGCKG	1 cut(s)	1119
MspI	CCGG	2 cut(s)	353, 1358
MspR9I	CCNGG	4 cut(s)	1056, 1139, 1358, 1359
Mva1269I	GAATGC	1 cut(s)	1219
MvaI	CCWGG	2 cut(s)	1056, 1139
MwoI	GCNNNNNNNGC	3 cut(s)	239, 1682, 1702
NciI	CCSGG	2 cut(s)	1358, 1359
NdeI	CATATG	1 cut(s)	2053
NdeII	GATC	7 cut(s)	372, 694, 1330, 1669, 1720, 1738, 1960
NlaIII	CATG	7 cut(s)	1177, 1304, 1448, 1496, 1700, 1823, 1832
NlaIV	GGNNCC	6 cut(s)	594, 1185, 1386, 1878, 1962, 2029
NmuCI	GTSAC	2 cut(s)	1928, 2036
NsiI	ATGCAT	1 cut(s)	1279
NspI	RCATGY	1 cut(s)	1496
PaeI	GCATGC	1 cut(s)	1496
PciSI	GCTCTTC	1 cut(s)	957
PctI	GAATGC	1 cut(s)	1219
PdmI	GAANNNNTTC	1 cut(s)	1529
PfeI	GAWTC	3 cut(s)	398, 1019, 1640
PflMI	CCANNNNNTGG	1 cut(s)	1970
PkrI	GCNGC	3 cut(s)	1088, 1506, 1684
PleI	GAGTC	2 cut(s)	307, 1121
PmaCI	CACGTG	1 cut(s)	239
PmlI	CACGTG	1 cut(s)	239
PpsI	GAGTC	2 cut(s)	307, 1121
Ppu21I	YACGTR	2 cut(s)	239, 1235
PpuMI	RGGWCCY	2 cut(s)	1184, 1877
PshBI	ATTAAT	1 cut(s)	1272
PsiI	TTATAA	1 cut(s)	525
Psp5II	RGGWCCY	2 cut(s)	1184, 1877
Psp6I	CCWGG	2 cut(s)	1054, 1137
PspCI	CACGTG	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	1970
PspGI	CCWGG	2 cut(s)	1054, 1137
PspN4I	GGNNCC	6 cut(s)	594, 1185, 1386, 1878, 1962, 2029
PspPI	GGNCC	5 cut(s)	1052, 1184, 1553, 1877, 2028
PspPPI	RGGWCCY	2 cut(s)	1184, 1877
PsrI	GAACNNNNNNTAC	2 cut(s)	1368, 1400
PstNI	CAGNNNCTG	1 cut(s)	1970
PsuI	RGATCY	2 cut(s)	1330, 1960
PvuII	CAGCTG	1 cut(s)	1119
RsaI	GTAC	6 cut(s)	55, 362, 1007, 1689, 1989, 2010
RsaNI	GTAC	6 cut(s)	54, 361, 1006, 1688, 1988, 2009
RseI	CAYNNNNRTG	1 cut(s)	1305
SapI	GCTCTTC	1 cut(s)	957
SaqAI	TTAA	3 cut(s)	1010, 1272, 1604
SatI	GCNGC	3 cut(s)	1087, 1505, 1683
Sau3AI	GATC	7 cut(s)	372, 694, 1330, 1669, 1720, 1738, 1960
Sau96I	GGNCC	5 cut(s)	1052, 1184, 1553, 1877, 2028
ScaI	AGTACT	3 cut(s)	55, 1007, 1689
SchI	GAGTC	2 cut(s)	308, 1122
ScrFI	CCNGG	4 cut(s)	1056, 1139, 1358, 1359
SduI	GDGCHC	2 cut(s)	922, 1912
SexAI	ACCWGGT	1 cut(s)	1137
SfaNI	GCATC	6 cut(s)	1094, 1147, 1405, 1776, 1825, 1957
SfcI	CTRYAG	1 cut(s)	1371
SinI	GGWCC	4 cut(s)	1184, 1553, 1877, 2028
SmaI	CCCGGG	1 cut(s)	1359
SmiMI	CAYNNNNRTG	1 cut(s)	1305
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
SphI	GCATGC	1 cut(s)	1496
SsiI	CCGC	4 cut(s)	173, 466, 1084, 1087
SspMI	CTAG	1 cut(s)	1067
StyD4I	CCNGG	4 cut(s)	1054, 1137, 1356, 1357
StyI	CCWWGG	2 cut(s)	927, 1090
TaaI	ACNGT	5 cut(s)	247, 574, 652, 1806, 1857
TaiI	ACGT	3 cut(s)	241, 1237, 1295
TaqI	TCGA	5 cut(s)	19, 196, 754, 1536, 2071
TatI	WGTACW	4 cut(s)	53, 1005, 1687, 1987
TauI	GCSGC	1 cut(s)	1089
TfiI	GAWTC	3 cut(s)	398, 1019, 1640
Tru1I	TTAA	3 cut(s)	1010, 1272, 1604
Tru9I	TTAA	3 cut(s)	1010, 1272, 1604
TscAI	CASTG	5 cut(s)	250, 464, 579, 657, 1045
TseFI	GTSAC	2 cut(s)	1928, 2036
TseI	GCWGC	2 cut(s)	1504, 1682
Tsp45I	GTSAC	2 cut(s)	1928, 2036
TspDTI	ATGAA	6 cut(s)	5, 17, 1281, 1452, 1906, 1937
TspGWI	ACGGA	3 cut(s)	1778, 1950, 2026
TspMI	CCCGGG	1 cut(s)	1357
TspRI	CASTG	5 cut(s)	250, 464, 579, 657, 1045
Van91I	CCANNNNNTGG	1 cut(s)	1970
VneI	GTGCAC	1 cut(s)	1908
VpaK11BI	GGWCC	4 cut(s)	1184, 1553, 1877, 2028
VspI	ATTAAT	1 cut(s)	1272
XagI	CCTNNNNNAGG	1 cut(s)	1392
XapI	RAATTY	2 cut(s)	770, 1580
XceI	RCATGY	1 cut(s)	1496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1656
XmaI	CCCGGG	1 cut(s)	1357
XmnI	GAANNNNTTC	1 cut(s)	1529
XspI	CTAG	1 cut(s)	1067
ZrmI	AGTACT	3 cut(s)	55, 1007, 1689
Zsp2I	ATGCAT	1 cut(s)	1279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.