Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001578

Physical Location & Seq

Genomic Coordinates Forward (+)

26425950 .. 26430147

Gene Structure 4198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g24970.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGTCGAGCAAGTAAACTACTTCACCATAACAAGTAGTAAACTACCCTTGTTTTTTAGCAAGGTACATAATGTATCGTCAAATATATTCAATGTGATTTTACAAGATTTAGTTTTCATTCAGTATAATAGGGAAATTTTAAAAGTAAAAAACATATCCACAACCCAAAGACCAGAAACCAAAATACTTCTTTCTTTTGGTCGGAAACCAAGATTGCTGATGACTCCGTCTCTGTTTCTTTGTCGTCCACTCCGTCTCCACACCGCACTCGTCTTCTCCAAACACCACTTTCCTAACAGTCCCTTATCATCATCAAATTTCACTTTAGTCCCTGTTTGGTCTTGCTCTCCCTCTCATTCCAGCAATGCCCCCACTCCCCAAGGTACTGCAGAGAAAATGGAGCAGATCGTGGGTGTGGATAAAGTCGATATCTTGAAGCAGAAAATGGAGGTTATTGGGATTCTCTGTACTGATTATTGTGTGCCTGGAAAGTATACTAATTTACTGTGTCCAAAGTGCAATGGTGGACCGACGATGGAGAGGAGTTTGTCTGTTCACATTGTCCAAAAGGGGGATTTGGCAATGTGGAGGTGTTTTCGAACGAATTGTAGTTGGGCTGACAAGGTATTTGCGGATGGCAGGGCAGCGCATAATGAGGTGAAGAAGAAAGTTCACTACTCTGGACAAATGACAGAGAAGAGCCTTAAGTTGGAACCACTAGGGGAAAAGCTAACTGCATACTTCTGTGAGCGAATGATATCTGAGGAAACTTTGCGCAGAAACGGTGTTATGCAACGTTCCAGTAATAAGGATATCATTGCATTTACTTATAAACGCAATGGACTGCTTGTTGCCTGCAAGTATCGAACCATAGAAAAAAGTTATTGGCAGGAGAAGGCGTCAGAGAAAATACTATATGGAATTGATGACATAAATGATGCAGCTGAAATTATCATTGTTGAAGGTGAAATTGACAAGCTTTCATTGGAGGAAGCTGGCTTCTGCAATTGTGTGAGTGTCCCTGATGGTGCACCGGGAAAAAGTTCTACTAAATTGCCACCAGTGGAAAAGGACACTGCATATCAGTATCTGTGGAATTGCAAACAGAATTTGGATAAGGTTTCTCGCATTATCCTGGCAACCGACAATGACAAACCAGGCCAAGCTTTGGCCAAAGATATAGCACGCCGCCTTGGGACACACAGATGTTGGCAAGTAAGTTGGCCGAAGAAAGATGAAGTCAGCTATTACAAAGATGCTAATGAGGTTCTCAAGGACATGGGACCTGATGCTTTGAGAAAGGTAATCGAAAATGCAGAACCGTATCAGCTATGCACCGCAGACCAAGTAGTACAAAGTTCGGACGAGCATAAGCCGGATAAAATACTGGCTTCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Toprim_4

Protein Analysis

467

Amino Acids

52.73

Weight (kDa)

8.79

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30660 AT1G30660 AT1G30660 AT1G30680
fragaria_vesca	FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11220 FvH4_3g11220
malus_domestica	MD05G1265600.v1.1 MD10G1243800.v1.1
prunus_persica	Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099900_v2.0.a1 Prupe.4G099900_v2.0.a1
pyrus_communis	pycom05g24970 pycom10g20390
rosa_chinensis	RchiOBHm_Chr5g0018141 RchiOBHm_Chr5g0018171
rosa_laevigata	RLG00000032341 RLG00000032343
rosa_multiflora	Rmu_sc0006594.1_g000001 Rmu_sc0013020.1_g000001 Rmu_sc0013020.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059480 Rroxscaffold_1G00059500
rosa_rugosa	Rorug05G0040700 Rorug05G0040900
rosa_samantha	Rh5AG133500 Rh5AG133800 Rh5BG131900 Rh5BG132300 Rh5CG144200 Rh5CG144500 Rh5DG133900 Rh5DG134200
rosa_wichuraiana	Rw5G011640 Rw5G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	831
Acc16I	TGCGCA	1 cut(s)	776
AccB7I	CCANNNNNTGG	1 cut(s)	1168
AccI	GTMKAC	1 cut(s)	494
AciI	CCGC	4 cut(s)	264, 632, 1189, 1338
AclI	AACGTT	1 cut(s)	796
AcoI	YGGCCR	2 cut(s)	1170, 1223
AcsI	RAATTY	3 cut(s)	135, 316, 1108
AcyI	GRCGYC	1 cut(s)	899
AfaI	GTAC	4 cut(s)	66, 385, 469, 1353
AfiI	CCNNNNNNNGG	3 cut(s)	571, 709, 1168
AflII	CTTAAG	1 cut(s)	704
AgsI	TTSAA	3 cut(s)	91, 436, 962
AjnI	CCWGG	3 cut(s)	484, 1134, 1156
AluBI	AGCT	7 cut(s)	730, 944, 979, 995, 1166, 1245, 1330
AluI	AGCT	7 cut(s)	730, 944, 979, 995, 1166, 1245, 1330
Alw21I	GWGCWC	1 cut(s)	1033
Alw26I	GTCTC	2 cut(s)	234, 260
Alw44I	GTGCAC	1 cut(s)	1029
AlwNI	CAGNNNCTG	1 cut(s)	1090
AoxI	GGCC	3 cut(s)	1159, 1170, 1223
ApaLI	GTGCAC	1 cut(s)	1029
ApeKI	GCWGC	2 cut(s)	644, 941
ApoI	RAATTY	3 cut(s)	135, 316, 1108
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
Asp700I	GAANNNNTTC	1 cut(s)	1042
AspLEI	GCGC	2 cut(s)	649, 777
AspS9I	GGNCC	2 cut(s)	527, 1283
AsuC2I	CCSGG	1 cut(s)	1035
AsuHPI	GGTGA	3 cut(s)	16, 670, 977
AsuII	TTCGAA	1 cut(s)	598
AvaII	GGWCC	2 cut(s)	527, 1283
BaeGI	GKGCMC	1 cut(s)	1033
BalI	TGGCCA	1 cut(s)	1172
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	1033
BbvI	GCAGC	2 cut(s)	656, 953
BccI	CCATC	3 cut(s)	529, 629, 1019
BciT130I	CCWGG	3 cut(s)	486, 1136, 1158
BcnI	CCSGG	1 cut(s)	1035
BcoDI	GTCTC	2 cut(s)	234, 260
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	387
BfrI	CTTAAG	1 cut(s)	704
BisI	GCNGC	3 cut(s)	645, 942, 1189
BlsI	GCNGC	3 cut(s)	646, 943, 1190
Bme1390I	CCNGG	4 cut(s)	486, 1035, 1136, 1158
Bme18I	GGWCC	2 cut(s)	527, 1283
BmgT120I	GGNCC	2 cut(s)	527, 1283
BmiI	GGNNCC	2 cut(s)	714, 1284
BmrFI	CCNGG	4 cut(s)	486, 1035, 1136, 1158
BmsI	GCATC	3 cut(s)	928, 1246, 1279
BpiI	GAAGAC	1 cut(s)	265
Bpu14I	TTCGAA	1 cut(s)	598
BpuEI	CTTGAG	1 cut(s)	1256
BpuMI	CCSGG	1 cut(s)	1035
BsaHI	GRCGYC	1 cut(s)	899
BsaJI	CCNNGG	2 cut(s)	379, 1192
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 884, 914
Bsc4I	CCNNNNNNNGG	3 cut(s)	571, 709, 1168
Bse1I	ACTGG	3 cut(s)	801, 1061, 1392
Bse3DI	GCAATG	5 cut(s)	370, 526, 588, 816, 844
BseBI	CCWGG	3 cut(s)	486, 1136, 1158
BseDI	CCNNGG	2 cut(s)	379, 1192
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	3 cut(s)	571, 709, 1168
BseMI	GCAATG	5 cut(s)	370, 526, 588, 816, 844
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	3 cut(s)	801, 1061, 1392
BseRI	GAGGAG	1 cut(s)	556
BseSI	GKGCMC	1 cut(s)	1033
BseXI	GCAGC	2 cut(s)	656, 953
BshFI	GGCC	3 cut(s)	1161, 1172, 1225
BsiHKAI	GWGCWC	1 cut(s)	1033
BsiSI	CCGG	2 cut(s)	1034, 1376
BslFI	GGGAC	5 cut(s)	285, 314, 1004, 1210, 1296
BslI	CCNNNNNNNGG	3 cut(s)	571, 709, 1168
BsmAI	GTCTC	2 cut(s)	234, 260
BsmBI	CGTCTC	2 cut(s)	234, 260
BsmFI	GGGAC	5 cut(s)	285, 314, 1004, 1210, 1296
BsnI	GGCC	3 cut(s)	1161, 1172, 1225
Bsp119I	TTCGAA	1 cut(s)	598
Bsp1286I	GDGCHC	1 cut(s)	1033
Bsp143I	GATC	1 cut(s)	405
BspACI	CCGC	4 cut(s)	264, 632, 1189, 1338
BspANI	GGCC	3 cut(s)	1161, 1172, 1225
BspCNI	CTCAG	1 cut(s)	754
BspLI	GGNNCC	2 cut(s)	714, 1284
BspMAI	CTGCAG	1 cut(s)	391
BspQI	GCTCTTC	1 cut(s)	692
BspT104I	TTCGAA	1 cut(s)	598
BspTI	CTTAAG	1 cut(s)	704
BsrDI	GCAATG	5 cut(s)	370, 526, 588, 816, 844
BsrI	ACTGG	3 cut(s)	801, 1061, 1392
BssECI	CCNNGG	2 cut(s)	379, 1192
BssMI	GATC	1 cut(s)	405
BssNAI	GTATAC	1 cut(s)	495
BssNI	GRCGYC	1 cut(s)	899
BssT1I	CCWWGG	2 cut(s)	379, 1192
Bst1107I	GTATAC	1 cut(s)	495
Bst2UI	CCWGG	3 cut(s)	486, 1136, 1158
Bst4CI	ACNGT	4 cut(s)	299, 507, 785, 1323
Bst6I	CTCTTC	1 cut(s)	692
BstACI	GRCGYC	1 cut(s)	899
BstAFI	CTTAAG	1 cut(s)	704
BstBI	TTCGAA	1 cut(s)	598
BstC8I	GCNNGC	3 cut(s)	856, 997, 1186
BstDEI	CTNAG	2 cut(s)	762, 1395
BstF5I	GGATG	1 cut(s)	640
BstHHI	GCGC	2 cut(s)	649, 777
BstKTI	GATC	1 cut(s)	408
BstMAI	GTCTC	2 cut(s)	234, 260
BstMBI	GATC	1 cut(s)	405
BstNI	CCWGG	3 cut(s)	486, 1136, 1158
BstSCI	CCNGG	4 cut(s)	484, 1033, 1134, 1156
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	1033
BstV1I	GCAGC	2 cut(s)	656, 953
BstV2I	GAAGAC	1 cut(s)	265
BstZ17I	GTATAC	1 cut(s)	495
BsuRI	GGCC	3 cut(s)	1161, 1172, 1225
BtsCI	GGATG	1 cut(s)	640
BtsI	GCAGTG	1 cut(s)	1074
BtsIMutI	CAGTG	2 cut(s)	1068, 1074
Cac8I	GCNNGC	3 cut(s)	856, 997, 1186
CaiI	CAGNNNCTG	1 cut(s)	1090
CfoI	GCGC	2 cut(s)	649, 777
Cfr13I	GGNCC	2 cut(s)	527, 1283
CseI	GACGC	1 cut(s)	888
Csp6I	GTAC	4 cut(s)	65, 384, 468, 1352
CviAII	CATG	1 cut(s)	1279
CviQI	GTAC	4 cut(s)	65, 384, 468, 1352
DdeI	CTNAG	2 cut(s)	762, 1395
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
DraI	TTTAAA	1 cut(s)	141
EaeI	YGGCCR	2 cut(s)	1170, 1223
Eam1104I	CTCTTC	1 cut(s)	692
EarI	CTCTTC	1 cut(s)	692
Eco130I	CCWWGG	2 cut(s)	379, 1192
Eco32I	GATATC	3 cut(s)	430, 759, 814
Eco47I	GGWCC	2 cut(s)	527, 1283
EcoO109I	RGGNCCY	1 cut(s)	1283
EcoRII	CCWGG	3 cut(s)	484, 1134, 1156
EcoRV	GATATC	3 cut(s)	430, 759, 814
EcoT14I	CCWWGG	2 cut(s)	379, 1192
ErhI	CCWWGG	2 cut(s)	379, 1192
Esp3I	CGTCTC	2 cut(s)	234, 260
FaeI	CATG	1 cut(s)	1282
FaqI	GGGAC	5 cut(s)	285, 314, 1004, 1210, 1296
FatI	CATG	1 cut(s)	1278
FblI	GTMKAC	1 cut(s)	494
Fnu4HI	GCNGC	3 cut(s)	645, 942, 1189
FokI	GGATG	1 cut(s)	647
Fsp4HI	GCNGC	3 cut(s)	645, 942, 1189
FspBI	CTAG	1 cut(s)	719
FspI	TGCGCA	1 cut(s)	776
GlaI	GCGC	2 cut(s)	648, 776
GluI	GCNGC	3 cut(s)	645, 942, 1189
HaeIII	GGCC	3 cut(s)	1161, 1172, 1225
HapII	CCGG	2 cut(s)	1034, 1376
HgaI	GACGC	1 cut(s)	888
HhaI	GCGC	2 cut(s)	649, 777
Hin1I	GRCGYC	1 cut(s)	899
Hin1II	CATG	1 cut(s)	1282
Hin6I	GCGC	2 cut(s)	647, 775
HinP1I	GCGC	2 cut(s)	647, 775
HindIII	AAGCTT	2 cut(s)	977, 1164
HinfI	GANTC	2 cut(s)	223, 460
HpaII	CCGG	2 cut(s)	1034, 1376
HphI	GGTGA	3 cut(s)	16, 670, 977
Hpy166II	GTNNAC	8 cut(s)	16, 41, 248, 495, 527, 556, 673, 1031
Hpy188I	TCNGA	4 cut(s)	204, 763, 904, 1363
Hpy188III	TCNNGA	2 cut(s)	433, 681
Hpy8I	GTNNAC	8 cut(s)	16, 41, 248, 495, 527, 556, 673, 1031
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	2 cut(s)	889, 956
HpyCH4III	ACNGT	4 cut(s)	299, 507, 785, 1323
HpyCH4IV	ACGT	1 cut(s)	796
HpyF3I	CTNAG	2 cut(s)	762, 1395
HpySE526I	ACGT	1 cut(s)	796
Hsp92I	GRCGYC	1 cut(s)	899
Hsp92II	CATG	1 cut(s)	1282
HspAI	GCGC	2 cut(s)	647, 775
Kzo9I	GATC	1 cut(s)	405
LguI	GCTCTTC	1 cut(s)	692
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	2 cut(s)	656, 953
LweI	GCATC	3 cut(s)	928, 1246, 1279
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	1 cut(s)	796
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	5 cut(s)	265, 673, 676, 709, 1240
MfeI	CAATTG	1 cut(s)	1006
MhlI	GDGCHC	1 cut(s)	1033
MlsI	TGGCCA	1 cut(s)	1172
MluNI	TGGCCA	1 cut(s)	1172
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	2 cut(s)	182, 690
MnlI	CCTC	8 cut(s)	361, 442, 534, 582, 649, 757, 982, 1258
Mox20I	TGGCCA	1 cut(s)	1172
MroXI	GAANNNNTTC	1 cut(s)	1042
MscI	TGGCCA	1 cut(s)	1172
MseI	TTAA	2 cut(s)	140, 705
MslI	CAYNNNNRTG	1 cut(s)	1204
Msp20I	TGGCCA	1 cut(s)	1172
MspA1I	CMGCKG	1 cut(s)	944
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	2 cut(s)	1034, 1376
MspR9I	CCNGG	4 cut(s)	486, 1035, 1136, 1158
MunI	CAATTG	1 cut(s)	1006
MvaI	CCWGG	3 cut(s)	486, 1136, 1158
NciI	CCSGG	1 cut(s)	1035
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	1 cut(s)	1282
NlaIV	GGNNCC	2 cut(s)	714, 1284
NsbI	TGCGCA	1 cut(s)	776
NspV	TTCGAA	1 cut(s)	598
PciSI	GCTCTTC	1 cut(s)	692
PcsI	WCGNNNNNNNCGW	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	1042
PfeI	GAWTC	1 cut(s)	460
PflFI	GACNNNGTC	1 cut(s)	226
PflMI	CCANNNNNTGG	1 cut(s)	1168
PkrI	GCNGC	3 cut(s)	646, 943, 1190
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	1283
PsiI	TTATAA	1 cut(s)	831
Psp1406I	AACGTT	1 cut(s)	796
Psp5II	RGGWCCY	1 cut(s)	1283
Psp6I	CCWGG	3 cut(s)	484, 1134, 1156
PspGI	CCWGG	3 cut(s)	484, 1134, 1156
PspN4I	GGNNCC	2 cut(s)	714, 1284
PspPI	GGNCC	2 cut(s)	527, 1283
PspPPI	RGGWCCY	1 cut(s)	1283
PstI	CTGCAG	1 cut(s)	391
PstNI	CAGNNNCTG	1 cut(s)	1090
PsyI	GACNNNGTC	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	944
RsaI	GTAC	4 cut(s)	66, 385, 469, 1353
RsaNI	GTAC	4 cut(s)	65, 384, 468, 1352
RseI	CAYNNNNRTG	1 cut(s)	1204
SapI	GCTCTTC	1 cut(s)	692
SaqAI	TTAA	2 cut(s)	140, 705
SatI	GCNGC	3 cut(s)	645, 942, 1189
Sau3AI	GATC	1 cut(s)	405
Sau96I	GGNCC	2 cut(s)	527, 1283
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	4 cut(s)	486, 1035, 1136, 1158
SduI	GDGCHC	1 cut(s)	1033
SfaNI	GCATC	3 cut(s)	928, 1246, 1279
SfcI	CTRYAG	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	598
SinI	GGWCC	2 cut(s)	527, 1283
SmiMI	CAYNNNNRTG	1 cut(s)	1204
SmlI	CTYRAG	2 cut(s)	704, 1271
SmoI	CTYRAG	2 cut(s)	704, 1271
SsiI	CCGC	4 cut(s)	264, 632, 1189, 1338
SspMI	CTAG	1 cut(s)	719
StyD4I	CCNGG	4 cut(s)	484, 1033, 1134, 1156
StyI	CCWWGG	2 cut(s)	379, 1192
TaaI	ACNGT	4 cut(s)	299, 507, 785, 1323
TaiI	ACGT	1 cut(s)	799
TaqI	TCGA	5 cut(s)	6, 426, 598, 865, 1308
TaqII	GACCGA	1 cut(s)	544
TatI	WGTACW	2 cut(s)	467, 1351
TauI	GCSGC	1 cut(s)	1191
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	2 cut(s)	140, 705
Tru9I	TTAA	2 cut(s)	140, 705
TscAI	CASTG	2 cut(s)	1068, 1081
TseI	GCWGC	2 cut(s)	644, 941
TspDTI	ATGAA	3 cut(s)	106, 972, 1251
TspGWI	ACGGA	2 cut(s)	216, 242
TspRI	CASTG	2 cut(s)	1068, 1081
Tth111I	GACNNNGTC	1 cut(s)	226
Van91I	CCANNNNNTGG	1 cut(s)	1168
Vha464I	CTTAAG	1 cut(s)	704
VneI	GTGCAC	1 cut(s)	1029
VpaK11BI	GGWCC	2 cut(s)	527, 1283
XapI	RAATTY	3 cut(s)	135, 316, 1108
XmiI	GTMKAC	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	1042
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.