Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001578

Physical Location & Seq

Genomic Coordinates Forward (+)

13023808 .. 13035831

Gene Structure 12024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG132300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2115 bp

ATGCGTCTTCTTCTTCTTCTTCATCGACCTCTTCATAAGCTTTCAGCCTTATCTTCAAGCACTGCTCTTCTTATGGGTTCCAAGCAGCTACTAAAGTCCACACCTTTCACAAACCCAACTCCTCCTTCTTCACAAACACACTCCTTTCACTCTCACAGACTCGTTTTCTCTGCATTTCCGCCTAAACCCAGGTCCAAAGCTCGGCCCTTTTGCCTCAGGACTAATGGGTATTCTTATGTCTCACATGCCAATGTCAAAACCCCAAAACTAGCTGATTTGGAGATAACAGATGAACAGAGATATGAGGCTTTGACGAAAAAGTTGAAGGAGATTGGCATTGATGATGAAATATGCGAACCAGCGCAGTATGGCCACTTAATTTGTCCAATGTGCAAAGGTGGCGATTCAGAGGAAAAGAGCTTATCCATTTTTATTGAAAAAGATTGGAGTTATGCTACTTGGCAGTGCCATCGCCGAAAATGTGATTGGAAAGGTAGAACAATGGCCTTTGCAGGAAGCAAGTCTTCTTATAAAAAATCAAAGAATAGCACGACAGATAAGACAAAAAGGGAAATCGCAGTGGAAAGTTTAGGACTGGAACCACTTTGTGAGGAGGTTCTTGCATTTTTTTCGGAGCGAGGAATATCAAGGGAAACAGTACAGAGGAATAAAGTAATGCAAAAGCGTTGTTCCATAACAGATCAGATTTCTATTGCATTTACTTATTGGAGGAATGGAAAGCTGATTAGTTGCAAGTATCGGGACATCAACAAGAAGTTCTGGCAGGAGAAGGATACTGAAAGGATTTTTTACGGGCTGGATGATATAAAGGATACAAATGATATCATCATTGTAGAAGGCGAGATGGATAAGCTTGCAATGGAAGAAGCTGGCTATCGTAATTGCGTGAGTGTGCCTGATGGTGCTCCTCCCAAGGCTTCTCCTCCCGATAAGGATGTGCCACCTGAAGAGCAGGATACAAAGTATCAATTTCTGTGGAACTGCAAAGAGTACTTAAAGAAGGAATCACGCATTATACTTGCCACTGATGGAGATGGGCCTGGTCAAGCCCTAGCTGAAGAACTTGCCCGGCGCCTTGGAAGAGAAAGATGCTGGCGAGTCAGCTGGCCAAAGAAAAATGATCAGGTTGAACACTTCAAAGATGCAAACGAGGTTCTCATGTATTTGGGACCTGCTGTATTGAAGGAAGTAATTGAGAATGCTGAATTATATCCTATTCGTGGATTGTTCAGATTTCAAGATTACTTTGATGAAATTAATGCATATTACCATCGGACATATAAACATGACTGCGGTGTCAAAACTGGGTGGAGAGATCTGGATGATTTATACAATGTTGTCCCGGGTGAGTTGACTATAGTAACAGGAGTTCCTAATTCAGGCAAGAGTGAGTGGATTGATGCTCTCTTGTGCAATCTCTATGAAGGATATGGTTGGAAATTTGCACTTTGTTCCATGGAAAACAAGGTTAGGGAGCATGCACGAAAGCTGCTGGAGAAACACATACAGAAGCCTTTCTTTGATGGACGCTATGGTGGTCCTGCTGAACGAATGAGTGTTGAAGAATTTGAGCGCGGGAAACAATGGTTAAATGACACATTTCACCTCATAAGGTGTGAGGATGATTCCCTTCCAAATATCAAATGGGTTCTTGATCTTGCACGAGCAGCAGTACTTAGGCATGGGGTGCGTGGACTTGTAATTGATCCTTACAACGAGCTTGATCATCAACGTCCACCAAACCAGACAGAAACAGAGTATGTAAGTCAGATGCTTACCAATGTCAAACGGTTTGCTCAGCATCATGCTTGTCATGTTTGGTTTGTAGCACATCCCAGACAGTTGCACCATTGGGTAGGGGGTCCTCCTAATCTTTATGATATAAGTGGAAGTGCACATTTCATAAACAAATGTGACAATGGAATTGTAATTCATCGTAATCGGGATCCAGAGGCTGGGGCCCTTGATCAAGTACAGGTCTGTGTTCGTAAGGTACGGAATAAAGTTGCAGGAACCATAGGTGACGCCTATTTGTCATATGATAGGGCAACTGGTCGATATGTGGATATTCCGAAACCAAATGGGGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003697 GO:0003824 GO:0003896 GO:0003899 GO:0004003 GO:0004386 GO:0005488 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006269 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009259 GO:0009260 GO:0009987 GO:0016043 GO:0016070 GO:0016462 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032392 GO:0032508 GO:0032774 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0042623 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046390 GO:0046483 GO:0051276 GO:0055086 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0090407 GO:0097159 GO:0097747 GO:0140097 GO:0140098 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaB_C Toprim_4

Protein Analysis

704

Amino Acids

80.87

Weight (kDa)

8.5

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Toprim_4	PF13662	281 - 367	8e-13	Toprim domain
Toprim	PF01751	282 - 364	2e-07	Toprim domain
DnaB_C	PF03796	439 - 694	2.8e-09	DnaB-like helicase C terminal domain
AAA_25	PF13481	453 - 620	4.1e-07	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30660 AT1G30660 AT1G30660 AT1G30680
fragaria_vesca	FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11220 FvH4_3g11220
malus_domestica	MD05G1265600.v1.1 MD10G1243800.v1.1
prunus_persica	Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099900_v2.0.a1 Prupe.4G099900_v2.0.a1
pyrus_communis	pycom05g24970 pycom10g20390
rosa_chinensis	RchiOBHm_Chr5g0018141 RchiOBHm_Chr5g0018171
rosa_laevigata	RLG00000032341 RLG00000032343
rosa_multiflora	Rmu_sc0006594.1_g000001 Rmu_sc0013020.1_g000001 Rmu_sc0013020.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059480 Rroxscaffold_1G00059500
rosa_rugosa	Rorug05G0040700 Rorug05G0040900
rosa_samantha	Rh5AG133500 Rh5AG133800 Rh5BG131900 Rh5BG132300 Rh5CG144200 Rh5CG144500 Rh5DG133900 Rh5DG134200
rosa_wichuraiana	Rw5G011640 Rw5G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
AasI	GACNNNNNNGTC	1 cut(s)	1316
Acc36I	ACCTGC	1 cut(s)	1201
AccB1I	GGYRCC	1 cut(s)	1092
AccB7I	CCANNNNNTGG	1 cut(s)	1976
AccII	CGCG	1 cut(s)	1596
AciI	CCGC	3 cut(s)	179, 1314, 1596
AclWI	GGATC	3 cut(s)	1721, 1961, 1974
AcoI	YGGCCR	2 cut(s)	370, 1127
AcsI	RAATTY	2 cut(s)	1460, 1586
AcuI	CTGAAG	2 cut(s)	987, 1098
AcyI	GRCGYC	2 cut(s)	1093, 2046
AdeI	CACNNNGTG	1 cut(s)	608
AfaI	GTAC	5 cut(s)	660, 1013, 1695, 1995, 2016
AfiI	CCNNNNNNNGG	5 cut(s)	201, 1241, 1400, 1976, 2105
AgsI	TTSAA	8 cut(s)	57, 325, 437, 1151, 1159, 1204, 1259, 1583
AjnI	CCWGG	2 cut(s)	188, 1060
AjuI	GAANNNNNNNTTGG	4 cut(s)	109, 141, 469, 501
Alw21I	GWGCWC	2 cut(s)	928, 1918
Alw26I	GTCTC	1 cut(s)	244
Alw44I	GTGCAC	1 cut(s)	1914
AlwI	GGATC	3 cut(s)	1721, 1961, 1974
AlwNI	CAGNNNCTG	1 cut(s)	1976
Ama87I	CYCGRG	1 cut(s)	1363
AoxI	GGCC	6 cut(s)	203, 370, 504, 1058, 1127, 1980
ApaI	GGGCCC	1 cut(s)	1984
ApaLI	GTGCAC	1 cut(s)	1914
ApeKI	GCWGC	3 cut(s)	85, 1510, 1688
ApoI	RAATTY	2 cut(s)	1460, 1586
AseI	ATTAAT	1 cut(s)	1278
Asp700I	GAANNNNTTC	1 cut(s)	1535
AspLEI	GCGC	3 cut(s)	364, 1095, 1596
AspS9I	GGNCC	8 cut(s)	192, 204, 1058, 1190, 1559, 1883, 1980, 1981
AsuC2I	CCSGG	3 cut(s)	1090, 1364, 1365
AsuHPI	GGTGA	3 cut(s)	1379, 1616, 2054
AvaI	CYCGRG	1 cut(s)	1363
AvaII	GGWCC	4 cut(s)	192, 1190, 1559, 1883
AxyI	CCTNAGG	1 cut(s)	215
BaeGI	GKGCMC	2 cut(s)	1918, 1984
BalI	TGGCCA	2 cut(s)	372, 1129
BamHI	GGATCC	1 cut(s)	1966
BanI	GGYRCC	1 cut(s)	1092
BanII	GRGCYC	1 cut(s)	1984
BauI	CACGAG	1 cut(s)	1683
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	2 cut(s)	928, 1918
BbvI	GCAGC	3 cut(s)	97, 1497, 1700
BccI	CCATC	7 cut(s)	477, 859, 914, 1043, 1049, 1299, 1538
BcgI	CGANNNNNNTGC	4 cut(s)	452, 486, 612, 646
BciT130I	CCWGG	2 cut(s)	190, 1062
BciVI	GTATCC	3 cut(s)	787, 826, 970
BclI	TGATCA	3 cut(s)	1141, 1744, 1987
BcnI	CCSGG	3 cut(s)	1090, 1364, 1365
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	269, 1073
BfmI	CTRYAG	1 cut(s)	1377
BfoI	RGCGCY	1 cut(s)	1096
BfuAI	ACCTGC	1 cut(s)	1201
BfuI	GTATCC	3 cut(s)	787, 826, 970
BglII	AGATCT	1 cut(s)	1336
BisI	GCNGC	3 cut(s)	86, 1511, 1689
BlpI	GCTNAGC	1 cut(s)	1818
BlsI	GCNGC	3 cut(s)	87, 1512, 1690
BmcAI	AGTACT	2 cut(s)	1013, 1695
Bme1390I	CCNGG	5 cut(s)	190, 1062, 1090, 1364, 1365
Bme18I	GGWCC	4 cut(s)	192, 1190, 1559, 1883
BmeT110I	CYCGRG	1 cut(s)	1363
BmgT120I	GGNCC	8 cut(s)	192, 204, 1058, 1190, 1559, 1883, 1980, 1981
BmiI	GGNNCC	9 cut(s)	79, 600, 1094, 1191, 1884, 1968, 1981, 1982, 2035
BmrFI	CCNGG	5 cut(s)	190, 1062, 1090, 1364, 1365
BmrI	ACTGGG	1 cut(s)	1335
BmsI	GCATC	5 cut(s)	1100, 1153, 1411, 1782, 1831
BmuI	ACTGGG	1 cut(s)	1335
BpiI	GAAGAC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	1535
Bpu1102I	GCTNAGC	1 cut(s)	1818
BpuMI	CCSGG	3 cut(s)	1090, 1364, 1365
BsaHI	GRCGYC	2 cut(s)	1093, 2046
BsaJI	CCNNGG	5 cut(s)	188, 933, 1096, 1363, 1476
Bsc4I	CCNNNNNNNGG	5 cut(s)	201, 1241, 1400, 1976, 2105
Bse1I	ACTGG	3 cut(s)	600, 1330, 2077
Bse21I	CCTNAGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	885
BseBI	CCWGG	2 cut(s)	190, 1062
BseDI	CCNNGG	5 cut(s)	188, 933, 1096, 1363, 1476
BseGI	GGATG	5 cut(s)	826, 961, 1348, 1648, 1852
BseLI	CCNNNNNNNGG	5 cut(s)	201, 1241, 1400, 1976, 2105
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	2 cut(s)	229, 1832
BseNI	ACTGG	3 cut(s)	600, 1330, 2077
BseRI	GAGGAG	4 cut(s)	111, 626, 918, 933
BseSI	GKGCMC	2 cut(s)	1918, 1984
BseXI	GCAGC	3 cut(s)	97, 1497, 1700
BseYI	CCCAGC	1 cut(s)	1976
Bsh1236I	CGCG	1 cut(s)	1596
BshFI	GGCC	6 cut(s)	205, 372, 506, 1060, 1129, 1982
BshNI	GGYRCC	1 cut(s)	1092
BsiHKAI	GWGCWC	2 cut(s)	928, 1918
BsiHKCI	CYCGRG	1 cut(s)	1363
BsiSI	CCGG	2 cut(s)	1090, 1364
BslFI	GGGAC	3 cut(s)	776, 1203, 1346
BslI	CCNNNNNNNGG	5 cut(s)	201, 1241, 1400, 1976, 2105
BsmAI	GTCTC	1 cut(s)	244
BsmFI	GGGAC	3 cut(s)	776, 1203, 1346
BsmI	GAATGC	1 cut(s)	1225
BsnI	GGCC	6 cut(s)	205, 372, 506, 1060, 1129, 1982
BsoBI	CYCGRG	1 cut(s)	1363
Bsp120I	GGGCCC	1 cut(s)	1980
Bsp1286I	GDGCHC	3 cut(s)	928, 1918, 1984
Bsp143I	GATC	8 cut(s)	700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
Bsp1720I	GCTNAGC	1 cut(s)	1818
Bsp19I	CCATGG	1 cut(s)	1476
BspACI	CCGC	3 cut(s)	179, 1314, 1596
BspANI	GGCC	6 cut(s)	205, 372, 506, 1060, 1129, 1982
BspCNI	CTCAG	2 cut(s)	228, 1831
BspFNI	CGCG	1 cut(s)	1596
BspLI	GGNNCC	9 cut(s)	79, 600, 1094, 1191, 1884, 1968, 1981, 1982, 2035
BspMI	ACCTGC	1 cut(s)	1201
BspPI	GGATC	3 cut(s)	1721, 1961, 1974
BspQI	GCTCTTC	2 cut(s)	72, 963
BspT107I	GGYRCC	1 cut(s)	1092
BsrDI	GCAATG	1 cut(s)	885
BsrI	ACTGG	3 cut(s)	600, 1330, 2077
BssECI	CCNNGG	5 cut(s)	188, 933, 1096, 1363, 1476
BssMI	GATC	8 cut(s)	700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
BssNI	GRCGYC	2 cut(s)	1093, 2046
BssSI	CACGAG	1 cut(s)	1683
BssT1I	CCWWGG	3 cut(s)	933, 1096, 1476
Bst2BI	CACGAG	1 cut(s)	1683
Bst2UI	CCWGG	2 cut(s)	190, 1062
Bst4CI	ACNGT	3 cut(s)	658, 1812, 1863
Bst6I	CTCTTC	4 cut(s)	36, 72, 963, 1096
BstACI	GRCGYC	2 cut(s)	1093, 2046
BstAPI	GCANNNNNTGC	1 cut(s)	1708
BstC8I	GCNNGC	5 cut(s)	876, 892, 1115, 1127, 1500
BstDEI	CTNAG	3 cut(s)	215, 1697, 1818
BstDSI	CCRYGG	1 cut(s)	1476
BstENI	CCTNNNNNAGG	1 cut(s)	1398
BstF5I	GGATG	5 cut(s)	826, 961, 1348, 1648, 1852
BstFNI	CGCG	1 cut(s)	1596
BstH2I	RGCGCY	1 cut(s)	1096
BstHHI	GCGC	3 cut(s)	364, 1095, 1596
BstKTI	GATC	8 cut(s)	703, 1144, 1339, 1678, 1729, 1747, 1969, 1990
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	8 cut(s)	700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
BstMWI	GCNNNNNNNGC	3 cut(s)	399, 1688, 1708
BstNI	CCWGG	2 cut(s)	190, 1062
BstNSI	RCATGY	2 cut(s)	248, 1502
BstSCI	CCNGG	5 cut(s)	188, 1060, 1088, 1362, 1363
BstSFI	CTRYAG	1 cut(s)	1377
BstSLI	GKGCMC	2 cut(s)	1918, 1984
BstUI	CGCG	1 cut(s)	1596
BstV1I	GCAGC	3 cut(s)	97, 1497, 1700
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	1336, 1966
BstYI	RGATCY	2 cut(s)	1336, 1966
Bsu36I	CCTNAGG	1 cut(s)	215
BsuI	GTATCC	3 cut(s)	787, 826, 970
BsuRI	GGCC	6 cut(s)	205, 372, 506, 1060, 1129, 1982
BtgI	CCRYGG	1 cut(s)	1476
BtgZI	GCGATG	1 cut(s)	455
BtsCI	GGATG	5 cut(s)	826, 961, 1348, 1648, 1852
BtsI	GCAGTG	3 cut(s)	60, 470, 585
BtsIMutI	CAGTG	4 cut(s)	60, 470, 585, 1044
BveI	ACCTGC	1 cut(s)	1201
Cac8I	GCNNGC	5 cut(s)	876, 892, 1115, 1127, 1500
CaiI	CAGNNNCTG	1 cut(s)	1976
CfoI	GCGC	3 cut(s)	364, 1095, 1596
Cfr13I	GGNCC	8 cut(s)	192, 204, 1058, 1190, 1559, 1883, 1980, 1981
Cfr9I	CCCGGG	1 cut(s)	1363
CseI	GACGC	2 cut(s)	1557, 2054
Csp6I	GTAC	5 cut(s)	659, 1012, 1694, 1994, 2015
CspCI	CAANNNNNGTGG	4 cut(s)	362, 397, 977, 1012
CviAII	CATG	8 cut(s)	245, 1180, 1307, 1477, 1499, 1703, 1826, 1835
CviQI	GTAC	5 cut(s)	659, 1012, 1694, 1994, 2015
DdeI	CTNAG	3 cut(s)	215, 1697, 1818
DinI	GGCGCC	1 cut(s)	1094
DpnI	GATC	8 cut(s)	702, 1143, 1338, 1677, 1728, 1746, 1968, 1989
DpnII	GATC	8 cut(s)	700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
DraIII	CACNNNGTG	1 cut(s)	608
DrdI	GACNNNNNNGTC	1 cut(s)	1316
DseDI	GACNNNNNNGTC	1 cut(s)	1316
EaeI	YGGCCR	2 cut(s)	370, 1127
Eam1104I	CTCTTC	4 cut(s)	36, 72, 963, 1096
EarI	CTCTTC	4 cut(s)	36, 72, 963, 1096
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	3 cut(s)	933, 1096, 1476
Eco24I	GRGCYC	1 cut(s)	1984
Eco32I	GATATC	1 cut(s)	844
Eco47I	GGWCC	4 cut(s)	192, 1190, 1559, 1883
Eco57I	CTGAAG	2 cut(s)	987, 1098
Eco81I	CCTNAGG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	1363
EcoNI	CCTNNNNNAGG	1 cut(s)	1398
EcoO109I	RGGNCCY	4 cut(s)	1190, 1883, 1980, 1981
EcoRII	CCWGG	2 cut(s)	188, 1060
EcoRV	GATATC	1 cut(s)	844
EcoT14I	CCWWGG	3 cut(s)	933, 1096, 1476
EcoT22I	ATGCAT	1 cut(s)	1285
EcoT38I	GRGCYC	1 cut(s)	1984
EgeI	GGCGCC	1 cut(s)	1094
EheI	GGCGCC	1 cut(s)	1094
ErhI	CCWWGG	3 cut(s)	933, 1096, 1476
FaeI	CATG	8 cut(s)	248, 1183, 1310, 1480, 1502, 1706, 1829, 1838
FalI	AAGNNNNNCTT	4 cut(s)	508, 540, 1523, 1555
FaqI	GGGAC	3 cut(s)	776, 1203, 1346
FatI	CATG	8 cut(s)	244, 1179, 1306, 1476, 1498, 1702, 1825, 1834
FauI	CCCGC	1 cut(s)	1589
FauNDI	CATATG	1 cut(s)	2059
FbaI	TGATCA	3 cut(s)	1141, 1744, 1987
Fnu4HI	GCNGC	3 cut(s)	86, 1511, 1689
FokI	GGATG	5 cut(s)	833, 968, 1355, 1655, 1839
FriOI	GRGCYC	1 cut(s)	1984
Fsp4HI	GCNGC	3 cut(s)	86, 1511, 1689
FspBI	CTAG	2 cut(s)	269, 1073
GlaI	GCGC	3 cut(s)	363, 1094, 1595
GluI	GCNGC	3 cut(s)	86, 1511, 1689
GsaI	CCCAGC	1 cut(s)	1980
GsuI	CTGGAG	1 cut(s)	1535
HaeII	RGCGCY	1 cut(s)	1096
HaeIII	GGCC	6 cut(s)	205, 372, 506, 1060, 1129, 1982
HapII	CCGG	2 cut(s)	1090, 1364
HgaI	GACGC	2 cut(s)	1557, 2054
HhaI	GCGC	3 cut(s)	364, 1095, 1596
Hin1I	GRCGYC	2 cut(s)	1093, 2046
Hin1II	CATG	8 cut(s)	248, 1183, 1310, 1480, 1502, 1706, 1829, 1838
Hin6I	GCGC	3 cut(s)	362, 1093, 1594
HinP1I	GCGC	3 cut(s)	362, 1093, 1594
HincII	GTYRAC	1 cut(s)	1374
HindII	GTYRAC	1 cut(s)	1374
HindIII	AAGCTT	2 cut(s)	38, 872
HinfI	GANTC	5 cut(s)	159, 404, 1025, 1119, 1646
HpaII	CCGG	2 cut(s)	1090, 1364
HphI	GGTGA	3 cut(s)	1379, 1616, 2054
Hpy166II	GTNNAC	5 cut(s)	99, 1374, 1715, 1757, 1916
Hpy188I	TCNGA	7 cut(s)	409, 634, 705, 1253, 1296, 1791, 2094
Hpy188III	TCNNGA	8 cut(s)	217, 761, 947, 1259, 1340, 1673, 1964, 1970
Hpy8I	GTNNAC	5 cut(s)	99, 1374, 1715, 1757, 1916
HpyAV	CCTTC	8 cut(s)	135, 319, 784, 851, 1015, 1198, 1439, 1661
HpyCH4III	ACNGT	3 cut(s)	658, 1812, 1863
HpyCH4IV	ACGT	1 cut(s)	1753
HpyF10VI	GCNNNNNNNGC	3 cut(s)	399, 1688, 1708
HpyF3I	CTNAG	3 cut(s)	215, 1697, 1818
HpySE526I	ACGT	1 cut(s)	1753
Hsp92I	GRCGYC	2 cut(s)	1093, 2046
Hsp92II	CATG	8 cut(s)	248, 1183, 1310, 1480, 1502, 1706, 1829, 1838
HspAI	GCGC	3 cut(s)	362, 1093, 1594
KasI	GGCGCC	1 cut(s)	1092
Ksp22I	TGATCA	3 cut(s)	1141, 1744, 1987
Kzo9I	GATC	8 cut(s)	700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
LguI	GCTCTTC	2 cut(s)	72, 963
LmnI	GCTCC	3 cut(s)	634, 931, 1495
Lsp1109I	GCAGC	3 cut(s)	97, 1497, 1700
LweI	GCATC	5 cut(s)	1100, 1153, 1411, 1782, 1831
MaeI	CTAG	2 cut(s)	269, 1073
MaeII	ACGT	1 cut(s)	1753
MaeIII	GTNAC	3 cut(s)	1381, 1934, 2042
MalI	GATC	8 cut(s)	702, 1143, 1338, 1677, 1728, 1746, 1968, 1989
MboI	GATC	8 cut(s)	700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
MflI	RGATCY	2 cut(s)	1336, 1966
MhlI	GDGCHC	3 cut(s)	928, 1918, 1984
MlsI	TGGCCA	2 cut(s)	372, 1129
MluNI	TGGCCA	2 cut(s)	372, 1129
Mly113I	GGCGCC	1 cut(s)	1093
MlyI	GAGTC	2 cut(s)	153, 1128
MmeI	TCCRAC	1 cut(s)	1436
Mox20I	TGGCCA	2 cut(s)	372, 1129
Mph1103I	ATGCAT	1 cut(s)	1285
MroXI	GAANNNNTTC	1 cut(s)	1535
MscI	TGGCCA	2 cut(s)	372, 1129
MseI	TTAA	4 cut(s)	377, 1016, 1278, 1610
MslI	CAYNNNNRTG	1 cut(s)	249
Msp20I	TGGCCA	2 cut(s)	372, 1129
MspA1I	CMGCKG	1 cut(s)	1125
MspI	CCGG	2 cut(s)	1090, 1364
MspR9I	CCNGG	5 cut(s)	190, 1062, 1090, 1364, 1365
Mva1269I	GAATGC	1 cut(s)	1225
MvaI	CCWGG	2 cut(s)	190, 1062
MvnI	CGCG	1 cut(s)	1596
MwoI	GCNNNNNNNGC	3 cut(s)	399, 1688, 1708
NarI	GGCGCC	1 cut(s)	1093
NciI	CCSGG	3 cut(s)	1090, 1364, 1365
NcoI	CCATGG	1 cut(s)	1476
NdeI	CATATG	1 cut(s)	2059
NdeII	GATC	8 cut(s)	700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
NlaIII	CATG	8 cut(s)	248, 1183, 1310, 1480, 1502, 1706, 1829, 1838
NlaIV	GGNNCC	9 cut(s)	79, 600, 1094, 1191, 1884, 1968, 1981, 1982, 2035
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	1934, 2042
NsiI	ATGCAT	1 cut(s)	1285
NspI	RCATGY	2 cut(s)	248, 1502
PaeI	GCATGC	1 cut(s)	1502
PciSI	GCTCTTC	2 cut(s)	72, 963
PctI	GAATGC	1 cut(s)	1225
PdmI	GAANNNNTTC	1 cut(s)	1535
PfeI	GAWTC	3 cut(s)	404, 1025, 1646
PflMI	CCANNNNNTGG	1 cut(s)	1976
PkrI	GCNGC	3 cut(s)	87, 1512, 1690
PleI	GAGTC	2 cut(s)	153, 1127
PluTI	GGCGCC	1 cut(s)	1096
PpsI	GAGTC	2 cut(s)	153, 1127
PpuMI	RGGWCCY	2 cut(s)	1190, 1883
PshBI	ATTAAT	1 cut(s)	1278
PsiI	TTATAA	1 cut(s)	531
Psp5II	RGGWCCY	2 cut(s)	1190, 1883
Psp6I	CCWGG	2 cut(s)	188, 1060
PspFI	CCCAGC	1 cut(s)	1976
PspGI	CCWGG	2 cut(s)	188, 1060
PspN4I	GGNNCC	9 cut(s)	79, 600, 1094, 1191, 1884, 1968, 1981, 1982, 2035
PspOMI	GGGCCC	1 cut(s)	1980
PspPI	GGNCC	8 cut(s)	192, 204, 1058, 1190, 1559, 1883, 1980, 1981
PspPPI	RGGWCCY	2 cut(s)	1190, 1883
PsrI	GAACNNNNNNTAC	2 cut(s)	1374, 1406
PstNI	CAGNNNCTG	1 cut(s)	1976
PsuI	RGATCY	2 cut(s)	1336, 1966
PvuII	CAGCTG	1 cut(s)	1125
RsaI	GTAC	5 cut(s)	660, 1013, 1695, 1995, 2016
RsaNI	GTAC	5 cut(s)	659, 1012, 1694, 1994, 2015
RseI	CAYNNNNRTG	1 cut(s)	249
SapI	GCTCTTC	2 cut(s)	72, 963
SaqAI	TTAA	4 cut(s)	377, 1016, 1278, 1610
SatI	GCNGC	3 cut(s)	86, 1511, 1689
Sau3AI	GATC	8 cut(s)	700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
Sau96I	GGNCC	8 cut(s)	192, 204, 1058, 1190, 1559, 1883, 1980, 1981
ScaI	AGTACT	2 cut(s)	1013, 1695
SchI	GAGTC	2 cut(s)	153, 1128
ScrFI	CCNGG	5 cut(s)	190, 1062, 1090, 1364, 1365
SduI	GDGCHC	3 cut(s)	928, 1918, 1984
SfaNI	GCATC	5 cut(s)	1100, 1153, 1411, 1782, 1831
SfcI	CTRYAG	1 cut(s)	1377
SfoI	GGCGCC	1 cut(s)	1094
SinI	GGWCC	4 cut(s)	192, 1190, 1559, 1883
SmaI	CCCGGG	1 cut(s)	1365
SmiMI	CAYNNNNRTG	1 cut(s)	249
SphI	GCATGC	1 cut(s)	1502
SsiI	CCGC	3 cut(s)	179, 1314, 1596
SspDI	GGCGCC	1 cut(s)	1092
SspMI	CTAG	2 cut(s)	269, 1073
StyD4I	CCNGG	5 cut(s)	188, 1060, 1088, 1362, 1363
StyI	CCWWGG	3 cut(s)	933, 1096, 1476
TaaI	ACNGT	3 cut(s)	658, 1812, 1863
TaiI	ACGT	1 cut(s)	1756
TaqI	TCGA	2 cut(s)	25, 2077
TatI	WGTACW	4 cut(s)	658, 1011, 1693, 1993
TfiI	GAWTC	3 cut(s)	404, 1025, 1646
Tru1I	TTAA	4 cut(s)	377, 1016, 1278, 1610
Tru9I	TTAA	4 cut(s)	377, 1016, 1278, 1610
TscAI	CASTG	4 cut(s)	67, 470, 585, 1051
TseFI	GTSAC	2 cut(s)	1934, 2042
TseI	GCWGC	3 cut(s)	85, 1510, 1688
Tsp45I	GTSAC	2 cut(s)	1934, 2042
TspDTI	ATGAA	8 cut(s)	11, 23, 306, 360, 1287, 1458, 1912, 1943
TspGWI	ACGGA	1 cut(s)	2032
TspMI	CCCGGG	1 cut(s)	1363
TspRI	CASTG	4 cut(s)	67, 470, 585, 1051
Van91I	CCANNNNNTGG	1 cut(s)	1976
VneI	GTGCAC	1 cut(s)	1914
VpaK11BI	GGWCC	4 cut(s)	192, 1190, 1559, 1883
VspI	ATTAAT	1 cut(s)	1278
XagI	CCTNNNNNAGG	1 cut(s)	1398
XapI	RAATTY	2 cut(s)	1460, 1586
XceI	RCATGY	2 cut(s)	248, 1502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1662
XmaI	CCCGGG	1 cut(s)	1363
XmnI	GAANNNNTTC	1 cut(s)	1535
XspI	CTAG	2 cut(s)	269, 1073
ZrmI	AGTACT	2 cut(s)	1013, 1695
Zsp2I	ATGCAT	1 cut(s)	1285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.