Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001578

Physical Location & Seq

Genomic Coordinates Reverse (-)

81509039 .. 81514381

Gene Structure 5343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCTCACCAGTCTCTCAAGTATCTGCCTTTATCGTCCTCTCCGAACTGCACTCTTTTTCTCCACACACAACTTGCTAAGCAGTCCCATATCATCCAATACTTCACTCCATATTTGGTCTTGCTCTTCCTCTAGTTCCACCCAGGTCCAAATTGCACCAGCAAATGTGGAGCAGAGCATTGGTGCGCCTAAAGTTGATGTCTTGAAGCAGAAATTGGAGCTTCTTGGGATTATCTGTGATAGTTCTTGTGTGCCTGGACACTATAGTAATCTACTGTGTCCCAAGTGCAATGGTGGGCAGTCACTGGAGAGGAGCTTGTCTCTTTACATTGTCCAAAAAGGGGATTTAGCAAGGTGGAGGTGTTTTCGAACCGATTGTAATTGGGCTGACAAGGTGTTTTTAGAAGGCAAGGCAGGACACAATGAGGTGAAGAAGAAAGAATTCCAGCCACTTAGGCAAATGACAGAGGAAGGCCTCAGGCTAGTACCAATAGGAGAAAAGGTAACGGCTTACTTCAATGAGAGGAAGATATCTGAGGAAACTCTGCGGAGAAATGCTGTAATGCAACTCTCTAATGATGTGCAACGCTCTAAGGAGGATGTCATTGCATTTACTTATAGACACAATGGATTACTTGTCGGTTGCAAGTATCGGACCCTAGAAAAAAGATTTTGGACGGAGAGGGGTTCAGATAAGATATTATATGGAATTGATGATATAAATGGTGCAGCTGAAATTATCATTGTTGAAGGTGAAATAGATAAGCTTTCTATGGAGGAAGCTGGATTCTGCAATTGTGTGAGTGCTCCTGGGGGTGGAGCAGGAAAGAATTCTCCTACATTGCCATCTATGGAAAAGGACACTACATTTCAGTACCTGTGGAATTGCATACAGGAGTTGGATAAGGTTTCTCGGATTATCCTAGCAACTGACAATGATGCAACAGGCCAAGCTTTGGCCAGAGCACTAGCACGCCGCCTCGGAACAAACAGATGTTGGCAAGTAAGCTGGCCAAAGAAAGACGAATTCAGCTGTTTCAAAGATGCTAATGAGGTTCTCAAATATATGGGACCTGATGCTTTGAGAAAGGTAATTGAAAGTGCAGAACCATATCAGCTATGCATCTCAGAGACTGAGACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Toprim_4

Protein Analysis

381

Amino Acids

42.67

Weight (kDa)

7.84

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Toprim_4	PF13662	245 - 328	5e-10	Toprim domain
Toprim	PF01751	245 - 324	3.4e-08	Toprim domain
Toprim_2	PF13155	247 - 352	1.8e-07	Toprim-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30660 AT1G30660 AT1G30660 AT1G30680
fragaria_vesca	FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11220 FvH4_3g11220
malus_domestica	MD05G1265600.v1.1 MD10G1243800.v1.1
prunus_persica	Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099900_v2.0.a1 Prupe.4G099900_v2.0.a1
pyrus_communis	pycom05g24970 pycom10g20390
rosa_chinensis	RchiOBHm_Chr5g0018141 RchiOBHm_Chr5g0018171
rosa_laevigata	RLG00000032341 RLG00000032343
rosa_multiflora	Rmu_sc0006594.1_g000001 Rmu_sc0013020.1_g000001 Rmu_sc0013020.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059480 Rroxscaffold_1G00059500
rosa_rugosa	Rorug05G0040700 Rorug05G0040900
rosa_samantha	Rh5AG133500 Rh5AG133800 Rh5BG131900 Rh5BG132300 Rh5CG144200 Rh5CG144500 Rh5DG133900 Rh5DG134200
rosa_wichuraiana	Rw5G011640 Rw5G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	955
AciI	CCGC	2 cut(s)	547, 976
AcoI	YGGCCR	2 cut(s)	957, 1010
AcsI	RAATTY	3 cut(s)	440, 829, 1025
AfaI	GTAC	2 cut(s)	486, 875
AfiI	CCNNNNNNNGG	3 cut(s)	340, 815, 955
AgsI	TTSAA	5 cut(s)	205, 517, 749, 1039, 1097
AjnI	CCWGG	3 cut(s)	141, 253, 808
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	9 cut(s)	220, 315, 731, 766, 782, 953, 1008, 1032, 1117
AluI	AGCT	9 cut(s)	220, 315, 731, 766, 782, 953, 1008, 1032, 1117
Alw21I	GWGCWC	2 cut(s)	808, 967
Alw26I	GTCTC	4 cut(s)	17, 324, 1124, 1130
AlwNI	CAGNNNCTG	3 cut(s)	304, 877, 1133
AoxI	GGCC	4 cut(s)	472, 946, 957, 1010
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	3 cut(s)	440, 829, 1025
Asp700I	GAANNNNTTC	2 cut(s)	440, 829
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	3 cut(s)	145, 654, 1070
AsuHPI	GGTGA	2 cut(s)	439, 764
AsuII	TTCGAA	1 cut(s)	367
AvaII	GGWCC	3 cut(s)	145, 654, 1070
AxyI	CCTNAGG	1 cut(s)	476
BalI	TGGCCA	2 cut(s)	959, 1012
Bbv12I	GWGCWC	2 cut(s)	808, 967
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	1 cut(s)	853
BceAI	ACGGC	1 cut(s)	522
BciT130I	CCWGG	3 cut(s)	143, 255, 810
BcoDI	GTCTC	4 cut(s)	17, 324, 1124, 1130
BfaI	CTAG	5 cut(s)	132, 482, 659, 923, 968
BfmI	CTRYAG	1 cut(s)	262
BglI	GCCNNNNNGGC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	729, 976
BlpI	GCTNAGC	1 cut(s)	77
BlsI	GCNGC	2 cut(s)	730, 977
Bme1390I	CCNGG	3 cut(s)	143, 255, 810
Bme18I	GGWCC	3 cut(s)	145, 654, 1070
BmgT120I	GGNCC	3 cut(s)	145, 654, 1070
BmiI	GGNNCC	2 cut(s)	656, 1071
BmrFI	CCNGG	3 cut(s)	143, 255, 810
BmsI	GCATC	4 cut(s)	928, 1033, 1066, 1131
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
BpmI	CTGGAG	1 cut(s)	326
Bpu1102I	GCTNAGC	1 cut(s)	77
Bpu14I	TTCGAA	1 cut(s)	367
BsaJI	CCNNGG	3 cut(s)	141, 809, 979
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	3 cut(s)	340, 815, 955
Bse1I	ACTGG	2 cut(s)	9, 309
Bse21I	CCTNAGG	1 cut(s)	476
Bse3DI	GCAATG	3 cut(s)	295, 603, 839
BseBI	CCWGG	3 cut(s)	143, 255, 810
BseDI	CCNNGG	3 cut(s)	141, 809, 979
BseGI	GGATG	2 cut(s)	92, 604
BseLI	CCNNNNNNNGG	3 cut(s)	340, 815, 955
BseMI	GCAATG	3 cut(s)	295, 603, 839
BseMII	CTCAG	4 cut(s)	490, 525, 1125, 1140
BseNI	ACTGG	2 cut(s)	9, 309
BseRI	GAGGAG	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	740
BsgI	GTGCAG	3 cut(s)	33, 747, 1122
BshFI	GGCC	4 cut(s)	474, 948, 959, 1012
BsiHKAI	GWGCWC	2 cut(s)	808, 967
BslFI	GGGAC	3 cut(s)	69, 264, 1083
BslI	CCNNNNNNNGG	3 cut(s)	340, 815, 955
BsmAI	GTCTC	4 cut(s)	17, 324, 1124, 1130
BsmFI	GGGAC	3 cut(s)	69, 264, 1083
BsnI	GGCC	4 cut(s)	474, 948, 959, 1012
Bsp119I	TTCGAA	1 cut(s)	367
Bsp1286I	GDGCHC	2 cut(s)	808, 967
Bsp1720I	GCTNAGC	1 cut(s)	77
BspACI	CCGC	2 cut(s)	547, 976
BspANI	GGCC	4 cut(s)	474, 948, 959, 1012
BspCNI	CTCAG	4 cut(s)	489, 526, 1126, 1139
BspLI	GGNNCC	2 cut(s)	656, 1071
BspQI	GCTCTTC	1 cut(s)	130
BspT104I	TTCGAA	1 cut(s)	367
BsrDI	GCAATG	3 cut(s)	295, 603, 839
BsrI	ACTGG	2 cut(s)	9, 309
BssECI	CCNNGG	3 cut(s)	141, 809, 979
Bst2UI	CCWGG	3 cut(s)	143, 255, 810
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	973, 1010
BstDEI	CTNAG	7 cut(s)	77, 452, 476, 534, 591, 1126, 1134
BstF5I	GGATG	2 cut(s)	92, 604
BstHHI	GCGC	1 cut(s)	187
BstMAI	GTCTC	4 cut(s)	17, 324, 1124, 1130
BstMWI	GCNNNNNNNGC	1 cut(s)	454
BstNI	CCWGG	3 cut(s)	143, 255, 810
BstSCI	CCNGG	3 cut(s)	141, 253, 808
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	740
Bsu36I	CCTNAGG	1 cut(s)	476
BsuRI	GGCC	4 cut(s)	474, 948, 959, 1012
BtsCI	GGATG	2 cut(s)	92, 604
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	973, 1010
CaiI	CAGNNNCTG	3 cut(s)	304, 877, 1133
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	145, 654, 1070
Csp6I	GTAC	2 cut(s)	485, 874
CviQI	GTAC	2 cut(s)	485, 874
DdeI	CTNAG	7 cut(s)	77, 452, 476, 534, 591, 1126, 1134
EaeI	YGGCCR	2 cut(s)	957, 1010
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	474
Eco32I	GATATC	1 cut(s)	531
Eco47I	GGWCC	3 cut(s)	145, 654, 1070
Eco81I	CCTNAGG	1 cut(s)	476
EcoO109I	RGGNCCY	1 cut(s)	1070
EcoRI	GAATTC	3 cut(s)	440, 829, 1025
EcoRII	CCWGG	3 cut(s)	141, 253, 808
EcoRV	GATATC	1 cut(s)	531
EcoT22I	ATGCAT	1 cut(s)	1124
FaqI	GGGAC	3 cut(s)	69, 264, 1083
Fnu4HI	GCNGC	2 cut(s)	729, 976
FokI	GGATG	2 cut(s)	79, 611
Fsp4HI	GCNGC	2 cut(s)	729, 976
FspBI	CTAG	5 cut(s)	132, 482, 659, 923, 968
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	2 cut(s)	729, 976
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	4 cut(s)	474, 948, 959, 1012
HhaI	GCGC	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HindIII	AAGCTT	2 cut(s)	764, 951
HinfI	GANTC	1 cut(s)	786
HphI	GGTGA	2 cut(s)	439, 764
Hpy188I	TCNGA	7 cut(s)	44, 535, 654, 691, 915, 983, 1129
Hpy188III	TCNNGA	1 cut(s)	202
HpyAV	CCTTC	3 cut(s)	398, 464, 743
HpyCH4III	ACNGT	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	454
HpyF3I	CTNAG	7 cut(s)	77, 452, 476, 534, 591, 1126, 1134
HspAI	GCGC	1 cut(s)	185
LguI	GCTCTTC	1 cut(s)	130
LmnI	GCTCC	5 cut(s)	169, 217, 312, 811, 818
Lsp1109I	GCAGC	1 cut(s)	740
LweI	GCATC	4 cut(s)	928, 1033, 1066, 1131
MaeI	CTAG	5 cut(s)	132, 482, 659, 923, 968
MaeIII	GTNAC	2 cut(s)	300, 502
MboII	GAAGA	4 cut(s)	117, 442, 445, 538
MfeI	CAATTG	1 cut(s)	793
MhlI	GDGCHC	2 cut(s)	808, 967
MlsI	TGGCCA	2 cut(s)	959, 1012
MluNI	TGGCCA	2 cut(s)	959, 1012
MmeI	TCCRAC	1 cut(s)	879
Mox20I	TGGCCA	2 cut(s)	959, 1012
Mph1103I	ATGCAT	1 cut(s)	1124
MroXI	GAANNNNTTC	2 cut(s)	440, 829
MscI	TGGCCA	2 cut(s)	959, 1012
Msp20I	TGGCCA	2 cut(s)	959, 1012
MspA1I	CMGCKG	2 cut(s)	731, 1032
MspR9I	CCNGG	3 cut(s)	143, 255, 810
MunI	CAATTG	1 cut(s)	793
MvaI	CCWGG	3 cut(s)	143, 255, 810
MwoI	GCNNNNNNNGC	1 cut(s)	454
NlaIV	GGNNCC	2 cut(s)	656, 1071
NmuCI	GTSAC	1 cut(s)	300
NsiI	ATGCAT	1 cut(s)	1124
NspV	TTCGAA	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	474
PciSI	GCTCTTC	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PdmI	GAANNNNTTC	2 cut(s)	440, 829
PfeI	GAWTC	1 cut(s)	786
PflMI	CCANNNNNTGG	1 cut(s)	955
PkrI	GCNGC	2 cut(s)	730, 977
PpuMI	RGGWCCY	1 cut(s)	1070
Psp5II	RGGWCCY	1 cut(s)	1070
Psp6I	CCWGG	3 cut(s)	141, 253, 808
PspGI	CCWGG	3 cut(s)	141, 253, 808
PspN4I	GGNNCC	2 cut(s)	656, 1071
PspPI	GGNCC	3 cut(s)	145, 654, 1070
PspPPI	RGGWCCY	1 cut(s)	1070
PstNI	CAGNNNCTG	3 cut(s)	304, 877, 1133
PvuII	CAGCTG	2 cut(s)	731, 1032
RsaI	GTAC	2 cut(s)	486, 875
RsaNI	GTAC	2 cut(s)	485, 874
SapI	GCTCTTC	1 cut(s)	130
SatI	GCNGC	2 cut(s)	729, 976
Sau96I	GGNCC	3 cut(s)	145, 654, 1070
ScrFI	CCNGG	3 cut(s)	143, 255, 810
SduI	GDGCHC	2 cut(s)	808, 967
SfaNI	GCATC	4 cut(s)	928, 1033, 1066, 1131
SfcI	CTRYAG	1 cut(s)	262
SfuI	TTCGAA	1 cut(s)	367
SinI	GGWCC	3 cut(s)	145, 654, 1070
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
SseBI	AGGCCT	1 cut(s)	474
SsiI	CCGC	2 cut(s)	547, 976
SspMI	CTAG	5 cut(s)	132, 482, 659, 923, 968
StuI	AGGCCT	1 cut(s)	474
StyD4I	CCNGG	3 cut(s)	141, 253, 808
TaaI	ACNGT	1 cut(s)	276
TaqI	TCGA	1 cut(s)	367
TauI	GCSGC	1 cut(s)	978
TfiI	GAWTC	1 cut(s)	786
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	1 cut(s)	300
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	692
TspRI	CASTG	1 cut(s)	309
Van91I	CCANNNNNTGG	1 cut(s)	955
VpaK11BI	GGWCC	3 cut(s)	145, 654, 1070
XapI	RAATTY	3 cut(s)	440, 829, 1025
XmnI	GAANNNNTTC	2 cut(s)	440, 829
XspI	CTAG	5 cut(s)	132, 482, 659, 923, 968
Zsp2I	ATGCAT	1 cut(s)	1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.