Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001578

Physical Location & Seq

Genomic Coordinates Forward (+)

40043646 .. 40047198

Gene Structure 3553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1265600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGACTCCGTCTCTGTTTCTTTGTCGTCCACTCCGTCTCCACACCGCACTCGTCTTCTCCAAACACCACTTTCCTAGCAGTCCCTTATCATCATCAAATTTCTCTTTAGTCCCTGTTCGGTCTTGCTCTTCCTCTCACTCCAGCAATGCCCCCACTCCCCATGGTACTGCAGAGAAAATGGAGGAGCAGATCGTGGGTGTCGATAAAGTCGATATCTTAAAGCAGAAAATGGAGGTTATTGGGATTCTCTGTACTGATTCTTGTGTGCCTGGAAAGTATACTAATTTACTGTGTCCAAAGTGCAATGGTGGACCGACGATGGAGAGGAGTTTGTCTGTTCACATTGTCCAAAAGGGGGATTTGGCAATGTGGAGGTGTTTTCGAACGGATTGTAGTTGGGCTGACAAGGTATTTGCGGATGGCAGGGCAGCGCATAATGAGGTGAAGAAGAAAGTTCACTACTCTGGACAAATGACAGAGAAGAGCCTTAAGTTGGAACCACTAGGGGAAAAGCTAACTGCCTACTTCAGTGAGCGAATGATATCCGAGGAAACTTTGCGCAGAAATGGGGTTATGCAACGTTCCAGTAATAAGGATATCATTGCATTTACTTATAAACGCAATGGACTGCTTGTTGCCTGCAAGTATCGAACCATAGAAAAAAGTTATTGGCAGGAGAAGGCGTCAGAGAAAATACTATATGGAGTTGATGACATAAATGATGCAGCTGAAATTATCATTGTTGAAGGTGAAATTGACAAGCTTTCATTGGAGGAAGCTGGCTTCTGCAATTGTGTGAGTGTCCCTGATGGTGCACCGGTAAAAAGTTCTACTAAATTGCCACCAGTGGAAAAGGACACTGCATATCAGTATCTGTGGAATTGCAAACAGAATTTGGATAAGGTTTCTCGCATTATCCTGGCAACCGACAATGACAAACCAGGCCAAGCTTTGGCCAAAGATATAGCACGCCGCCTTGGGACACACAGATGTTGGCAAGTAAGTTGGCCGAAGAAAGATGAAGTCAGCTATTACAAAGATGCTAATGAGGTTCTCAAGGACATGGGACCTGATGCTTTGAAAAAGGTAATCGAAAATGCAGAACCGTATCAGCTATGCACCGCAGACCAAGTAGTACAAAGTTCAGACGAGCATAAGCCGGATGAAATACTGGCTTCACAGTTAACAAAGTGCACACGACGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Toprim_4

Protein Analysis

403

Amino Acids

45.13

Weight (kDa)

8.25

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Toprim_4	PF13662	244 - 327	2.8e-11	Toprim domain
Toprim	PF01751	244 - 324	2.1e-09	Toprim domain
Toprim_2	PF13155	246 - 352	1.5e-07	Toprim-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30660 AT1G30660 AT1G30660 AT1G30680
fragaria_vesca	FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11220 FvH4_3g11220
malus_domestica	MD05G1265600.v1.1 MD10G1243800.v1.1
prunus_persica	Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099900_v2.0.a1 Prupe.4G099900_v2.0.a1
pyrus_communis	pycom05g24970 pycom10g20390
rosa_chinensis	RchiOBHm_Chr5g0018141 RchiOBHm_Chr5g0018171
rosa_laevigata	RLG00000032341 RLG00000032343
rosa_multiflora	Rmu_sc0006594.1_g000001 Rmu_sc0013020.1_g000001 Rmu_sc0013020.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059480 Rroxscaffold_1G00059500
rosa_rugosa	Rorug05G0040700 Rorug05G0040900
rosa_samantha	Rh5AG133500 Rh5AG133800 Rh5BG131900 Rh5BG132300 Rh5CG144200 Rh5CG144500 Rh5DG133900 Rh5DG134200
rosa_wichuraiana	Rw5G011640 Rw5G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
Acc16I	TGCGCA	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	952
AccI	GTMKAC	1 cut(s)	278
AciI	CCGC	4 cut(s)	45, 416, 973, 1122
AclI	AACGTT	1 cut(s)	580
AcoI	YGGCCR	2 cut(s)	954, 1007
AcsI	RAATTY	2 cut(s)	97, 892
AcuI	CTGAAG	1 cut(s)	511
AcyI	GRCGYC	1 cut(s)	683
AfaI	GTAC	3 cut(s)	166, 253, 1137
AfiI	CCNNNNNNNGG	3 cut(s)	355, 493, 952
AflII	CTTAAG	1 cut(s)	488
AgeI	ACCGGT	1 cut(s)	817
AgsI	TTSAA	2 cut(s)	746, 1081
AjnI	CCWGG	3 cut(s)	268, 918, 940
AluBI	AGCT	7 cut(s)	514, 728, 763, 779, 950, 1029, 1114
AluI	AGCT	7 cut(s)	514, 728, 763, 779, 950, 1029, 1114
Alw21I	GWGCWC	2 cut(s)	817, 1196
Alw26I	GTCTC	2 cut(s)	15, 41
Alw44I	GTGCAC	2 cut(s)	813, 1192
AlwNI	CAGNNNCTG	1 cut(s)	874
AoxI	GGCC	3 cut(s)	943, 954, 1007
ApaLI	GTGCAC	2 cut(s)	813, 1192
ApeKI	GCWGC	2 cut(s)	428, 725
ApoI	RAATTY	2 cut(s)	97, 892
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AsiGI	ACCGGT	1 cut(s)	817
AspLEI	GCGC	2 cut(s)	433, 561
AspS9I	GGNCC	2 cut(s)	311, 1067
AsuHPI	GGTGA	2 cut(s)	454, 761
AsuII	TTCGAA	1 cut(s)	382
AvaII	GGWCC	2 cut(s)	311, 1067
BaeGI	GKGCMC	2 cut(s)	817, 1196
BalI	TGGCCA	1 cut(s)	956
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	2 cut(s)	817, 1196
BbvI	GCAGC	2 cut(s)	440, 737
BccI	CCATC	3 cut(s)	313, 413, 803
BciT130I	CCWGG	3 cut(s)	270, 920, 942
BcoDI	GTCTC	2 cut(s)	15, 41
BfaI	CTAG	2 cut(s)	75, 503
BfmI	CTRYAG	1 cut(s)	168
BfrI	CTTAAG	1 cut(s)	488
BisI	GCNGC	3 cut(s)	429, 726, 973
BlsI	GCNGC	3 cut(s)	430, 727, 974
Bme1390I	CCNGG	3 cut(s)	270, 920, 942
Bme18I	GGWCC	2 cut(s)	311, 1067
BmgT120I	GGNCC	2 cut(s)	311, 1067
BmiI	GGNNCC	2 cut(s)	498, 1068
BmrFI	CCNGG	3 cut(s)	270, 920, 942
BmsI	GCATC	3 cut(s)	712, 1030, 1063
BpiI	GAAGAC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	1040
BsaHI	GRCGYC	1 cut(s)	683
BsaJI	CCNNGG	3 cut(s)	160, 546, 976
BsaWI	WCCGGW	1 cut(s)	817
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 668, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 493, 952
Bse118I	RCCGGY	1 cut(s)	817
Bse1I	ACTGG	3 cut(s)	585, 845, 1176
Bse3DI	GCAATG	5 cut(s)	151, 310, 372, 600, 628
BseBI	CCWGG	3 cut(s)	270, 920, 942
BseDI	CCNNGG	3 cut(s)	160, 546, 976
BseGI	GGATG	2 cut(s)	424, 1168
BseLI	CCNNNNNNNGG	3 cut(s)	355, 493, 952
BseMI	GCAATG	5 cut(s)	151, 310, 372, 600, 628
BseNI	ACTGG	3 cut(s)	585, 845, 1176
BseRI	GAGGAG	2 cut(s)	197, 340
BseSI	GKGCMC	2 cut(s)	817, 1196
BseXI	GCAGC	2 cut(s)	440, 737
BshFI	GGCC	3 cut(s)	945, 956, 1009
BshTI	ACCGGT	1 cut(s)	817
BsiHKAI	GWGCWC	2 cut(s)	817, 1196
BsiSI	CCGG	2 cut(s)	818, 1160
BslFI	GGGAC	5 cut(s)	66, 95, 788, 994, 1080
BslI	CCNNNNNNNGG	3 cut(s)	355, 493, 952
BsmAI	GTCTC	2 cut(s)	15, 41
BsmBI	CGTCTC	2 cut(s)	15, 41
BsmFI	GGGAC	5 cut(s)	66, 95, 788, 994, 1080
BsnI	GGCC	3 cut(s)	945, 956, 1009
Bsp119I	TTCGAA	1 cut(s)	382
Bsp1286I	GDGCHC	2 cut(s)	817, 1196
Bsp143I	GATC	1 cut(s)	189
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	4 cut(s)	45, 416, 973, 1122
BspANI	GGCC	3 cut(s)	945, 956, 1009
BspLI	GGNNCC	2 cut(s)	498, 1068
BspMAI	CTGCAG	1 cut(s)	172
BspQI	GCTCTTC	2 cut(s)	133, 476
BspT104I	TTCGAA	1 cut(s)	382
BspTI	CTTAAG	1 cut(s)	488
BsrDI	GCAATG	5 cut(s)	151, 310, 372, 600, 628
BsrFI	RCCGGY	1 cut(s)	817
BsrI	ACTGG	3 cut(s)	585, 845, 1176
BssAI	RCCGGY	1 cut(s)	817
BssECI	CCNNGG	3 cut(s)	160, 546, 976
BssMI	GATC	1 cut(s)	189
BssNAI	GTATAC	1 cut(s)	279
BssNI	GRCGYC	1 cut(s)	683
BssT1I	CCWWGG	2 cut(s)	160, 976
Bst1107I	GTATAC	1 cut(s)	279
Bst2UI	CCWGG	3 cut(s)	270, 920, 942
Bst4CI	ACNGT	3 cut(s)	291, 1107, 1182
Bst6I	CTCTTC	2 cut(s)	133, 476
BstACI	GRCGYC	1 cut(s)	683
BstAFI	CTTAAG	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	382
BstC8I	GCNNGC	3 cut(s)	640, 781, 970
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	2 cut(s)	424, 1168
BstHHI	GCGC	2 cut(s)	433, 561
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	2 cut(s)	15, 41
BstMBI	GATC	1 cut(s)	189
BstNI	CCWGG	3 cut(s)	270, 920, 942
BstSCI	CCNGG	3 cut(s)	268, 918, 940
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	2 cut(s)	817, 1196
BstV1I	GCAGC	2 cut(s)	440, 737
BstV2I	GAAGAC	1 cut(s)	46
BstZ17I	GTATAC	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	945, 956, 1009
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	424, 1168
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	3 cut(s)	535, 852, 858
Cac8I	GCNNGC	3 cut(s)	640, 781, 970
CaiI	CAGNNNCTG	1 cut(s)	874
CfoI	GCGC	2 cut(s)	433, 561
Cfr10I	RCCGGY	1 cut(s)	817
Cfr13I	GGNCC	2 cut(s)	311, 1067
CseI	GACGC	1 cut(s)	672
Csp6I	GTAC	3 cut(s)	165, 252, 1136
CspAI	ACCGGT	1 cut(s)	817
CviAII	CATG	2 cut(s)	161, 1063
CviQI	GTAC	3 cut(s)	165, 252, 1136
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
EaeI	YGGCCR	2 cut(s)	954, 1007
Eam1104I	CTCTTC	2 cut(s)	133, 476
EarI	CTCTTC	2 cut(s)	133, 476
Eco130I	CCWWGG	2 cut(s)	160, 976
Eco32I	GATATC	3 cut(s)	214, 543, 598
Eco47I	GGWCC	2 cut(s)	311, 1067
Eco57I	CTGAAG	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	1067
EcoRII	CCWGG	3 cut(s)	268, 918, 940
EcoRV	GATATC	3 cut(s)	214, 543, 598
EcoT14I	CCWWGG	2 cut(s)	160, 976
ErhI	CCWWGG	2 cut(s)	160, 976
Esp3I	CGTCTC	2 cut(s)	15, 41
FaeI	CATG	2 cut(s)	164, 1066
FaqI	GGGAC	5 cut(s)	66, 95, 788, 994, 1080
FatI	CATG	2 cut(s)	160, 1062
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	3 cut(s)	429, 726, 973
FokI	GGATG	2 cut(s)	431, 1175
Fsp4HI	GCNGC	3 cut(s)	429, 726, 973
FspBI	CTAG	2 cut(s)	75, 503
FspI	TGCGCA	1 cut(s)	560
GlaI	GCGC	2 cut(s)	432, 560
GluI	GCNGC	3 cut(s)	429, 726, 973
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	945, 956, 1009
HapII	CCGG	2 cut(s)	818, 1160
HgaI	GACGC	1 cut(s)	672
HhaI	GCGC	2 cut(s)	433, 561
Hin1I	GRCGYC	1 cut(s)	683
Hin1II	CATG	2 cut(s)	164, 1066
Hin6I	GCGC	2 cut(s)	431, 559
HinP1I	GCGC	2 cut(s)	431, 559
HincII	GTYRAC	1 cut(s)	1185
HindII	GTYRAC	1 cut(s)	1185
HindIII	AAGCTT	2 cut(s)	761, 948
HinfI	GANTC	3 cut(s)	4, 244, 257
HpaI	GTTAAC	1 cut(s)	1185
HpaII	CCGG	2 cut(s)	818, 1160
HphI	GGTGA	2 cut(s)	454, 761
Hpy166II	GTNNAC	8 cut(s)	29, 279, 311, 340, 457, 815, 1185, 1194
Hpy188I	TCNGA	3 cut(s)	547, 688, 1147
Hpy188III	TCNNGA	1 cut(s)	465
Hpy8I	GTNNAC	8 cut(s)	29, 279, 311, 340, 457, 815, 1185, 1194
Hpy99I	CGWCG	2 cut(s)	319, 1203
HpyAV	CCTTC	2 cut(s)	673, 740
HpyCH4III	ACNGT	3 cut(s)	291, 1107, 1182
HpyCH4IV	ACGT	1 cut(s)	580
HpySE526I	ACGT	1 cut(s)	580
Hsp92I	GRCGYC	1 cut(s)	683
Hsp92II	CATG	2 cut(s)	164, 1066
HspAI	GCGC	2 cut(s)	431, 559
KspAI	GTTAAC	1 cut(s)	1185
Kzo9I	GATC	1 cut(s)	189
LguI	GCTCTTC	2 cut(s)	133, 476
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	2 cut(s)	440, 737
LweI	GCATC	3 cut(s)	712, 1030, 1063
MaeI	CTAG	2 cut(s)	75, 503
MaeII	ACGT	1 cut(s)	580
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	6 cut(s)	46, 120, 457, 460, 493, 1024
MfeI	CAATTG	1 cut(s)	790
MhlI	GDGCHC	2 cut(s)	817, 1196
MlsI	TGGCCA	1 cut(s)	956
MluCI	AATT	8 cut(s)	97, 283, 732, 753, 790, 836, 880, 892
MluNI	TGGCCA	1 cut(s)	956
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	9 cut(s)	142, 175, 226, 318, 366, 433, 541, 766, 1042
Mox20I	TGGCCA	1 cut(s)	956
MscI	TGGCCA	1 cut(s)	956
MseI	TTAA	3 cut(s)	218, 489, 1184
MslI	CAYNNNNRTG	1 cut(s)	988
Msp20I	TGGCCA	1 cut(s)	956
MspA1I	CMGCKG	1 cut(s)	728
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	2 cut(s)	818, 1160
MspR9I	CCNGG	3 cut(s)	270, 920, 942
MunI	CAATTG	1 cut(s)	790
MvaI	CCWGG	3 cut(s)	270, 920, 942
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	2 cut(s)	164, 1066
NlaIV	GGNNCC	2 cut(s)	498, 1068
NsbI	TGCGCA	1 cut(s)	560
NspV	TTCGAA	1 cut(s)	382
PciSI	GCTCTTC	2 cut(s)	133, 476
PcsI	WCGNNNNNNNCGW	3 cut(s)	31, 198, 207
PfeI	GAWTC	2 cut(s)	244, 257
PflFI	GACNNNGTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	952
PinAI	ACCGGT	1 cut(s)	817
PkrI	GCNGC	3 cut(s)	430, 727, 974
PpuMI	RGGWCCY	1 cut(s)	1067
PsiI	TTATAA	1 cut(s)	615
Psp1406I	AACGTT	1 cut(s)	580
Psp5II	RGGWCCY	1 cut(s)	1067
Psp6I	CCWGG	3 cut(s)	268, 918, 940
PspGI	CCWGG	3 cut(s)	268, 918, 940
PspN4I	GGNNCC	2 cut(s)	498, 1068
PspPI	GGNCC	2 cut(s)	311, 1067
PspPPI	RGGWCCY	1 cut(s)	1067
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	874
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	3 cut(s)	166, 253, 1137
RsaNI	GTAC	3 cut(s)	165, 252, 1136
RseI	CAYNNNNRTG	1 cut(s)	988
SapI	GCTCTTC	2 cut(s)	133, 476
SaqAI	TTAA	3 cut(s)	218, 489, 1184
SatI	GCNGC	3 cut(s)	429, 726, 973
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	2 cut(s)	311, 1067
ScrFI	CCNGG	3 cut(s)	270, 920, 942
SduI	GDGCHC	2 cut(s)	817, 1196
SfaNI	GCATC	3 cut(s)	712, 1030, 1063
SfcI	CTRYAG	1 cut(s)	168
SfuI	TTCGAA	1 cut(s)	382
SinI	GGWCC	2 cut(s)	311, 1067
SmiMI	CAYNNNNRTG	1 cut(s)	988
SmlI	CTYRAG	2 cut(s)	488, 1055
SmoI	CTYRAG	2 cut(s)	488, 1055
Sse9I	AATT	8 cut(s)	97, 283, 732, 753, 790, 836, 880, 892
SsiI	CCGC	4 cut(s)	45, 416, 973, 1122
SspMI	CTAG	2 cut(s)	75, 503
StyD4I	CCNGG	3 cut(s)	268, 918, 940
StyI	CCWWGG	2 cut(s)	160, 976
TaaI	ACNGT	3 cut(s)	291, 1107, 1182
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	5 cut(s)	201, 210, 382, 649, 1092
TaqII	GACCGA	2 cut(s)	108, 328
TasI	AATT	8 cut(s)	97, 283, 732, 753, 790, 836, 880, 892
TatI	WGTACW	2 cut(s)	251, 1135
TauI	GCSGC	1 cut(s)	975
TfiI	GAWTC	2 cut(s)	244, 257
Tru1I	TTAA	3 cut(s)	218, 489, 1184
Tru9I	TTAA	3 cut(s)	218, 489, 1184
TscAI	CASTG	3 cut(s)	535, 852, 865
TseI	GCWGC	2 cut(s)	428, 725
TspDTI	ATGAA	3 cut(s)	756, 1035, 1179
TspGWI	ACGGA	2 cut(s)	23, 401
TspRI	CASTG	3 cut(s)	535, 852, 865
Tth111I	GACNNNGTC	1 cut(s)	7
Van91I	CCANNNNNTGG	1 cut(s)	952
Vha464I	CTTAAG	1 cut(s)	488
VneI	GTGCAC	2 cut(s)	813, 1192
VpaK11BI	GGWCC	2 cut(s)	311, 1067
XapI	RAATTY	2 cut(s)	97, 892
XmiI	GTMKAC	1 cut(s)	278
XspI	CTAG	2 cut(s)	75, 503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.