Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001578

Physical Location & Seq

Genomic Coordinates Reverse (-)

5095509 .. 5100559

Gene Structure 5051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G099900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAGTGCTTCAAGTCTGTGCCTTTATCGTCCTCTCATCACTGCACTCTTCTTCTCCAGACGCCGCTTAATTAGCAGTTCCCTATCATCAAGTCTCCCTTTAGTCCGTGTTTGGTCTTACTCTTCCTCTCATTCCAGCAATGGCCCAACTCCACCACCAGCTATTGTGGAAAAAATGGAGGAGCAGACCATTGGCGTGGCTAAAGTCGATACCTTGAAGCAGAAAATGGAGCTTCTTGGGATTCTTTGTAATGATTCTTGTGTGCCTGGACGCTATACTAATCTACTGTGTCCCAAGTGCAACGGTGGACCGTCAATGGAGAGGAGCTTGTCTGTTCACATTGTCCAAAAGGGGGATTTGGCAATGTGGAGGTGTTTTCGAACTGATTGTAGTTGGGGTGACCAGGTATTCATAGATGGCAGGGCAGCACATAATGAGGTGAAGAAGATAGTCCAATTCTCTGGACAAATGACAGAGGAGAGCCTCAGGTTAGAACCACCAGGGGAAAAGATAACTGCATACTTCAGTGAGCGAATGATATCTGACGAAACTCTGCGGAGAAATGCTGTAATGCAACGTTCTGGTGATAAGGATATCATTGCATTTACTTATAAACGTAATGGACTGCTTGTTGGCTGCAAGTTCCGAAGCATAGAAAAAAGATACTGGAAGGAGAAGGGTTCTGAGAAAACACTATATGGAATTGATGACATAAATGATGCAGCTGAAATTATCTTTGTTGAAGGGGAAATAGACAAGCTTTCAGTGGAGGAAGCTGGCTTCTGCAATTGTGTGAGTGTCCCTGATGGTGCGCCAGGAAAGAGTTCTAATAAATTGCCACCTGTGGAAAAGGACTCTAGATATCAGTATCTGCGGAGTTGCAAACAGCATTTGGATAAGGTTTCTCGGATTATCCTGGCAACTGACAATGATAAACCAGGACAAGCTTTGGCCAGAGATATAGCACTCCGCCTTGGGACACACAGATGTTGGCAAGTAAGTTGGCCAAAGAAAGATGAGTCCAGCTATTACAAAGATGCTAATGAGGTTCTAAGGCATATGGGACCTGATGCTTTGAGAAAGGTAATTGAAAATGCCAAACCGTATCAGCTATGCATCTCAGACCGAGTAGTAAGTTCAGACAAGCATAAGCCAGAAAGAATACCGGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Toprim_4

Protein Analysis

392

Amino Acids

43.99

Weight (kDa)

8.84

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30660 AT1G30660 AT1G30660 AT1G30680
fragaria_vesca	FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11200 FvH4_3g11220 FvH4_3g11220
malus_domestica	MD05G1265600.v1.1 MD10G1243800.v1.1
prunus_persica	Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099700_v2.0.a1 Prupe.4G099900_v2.0.a1 Prupe.4G099900_v2.0.a1
pyrus_communis	pycom05g24970 pycom10g20390
rosa_chinensis	RchiOBHm_Chr5g0018141 RchiOBHm_Chr5g0018171
rosa_laevigata	RLG00000032341 RLG00000032343
rosa_multiflora	Rmu_sc0006594.1_g000001 Rmu_sc0013020.1_g000001 Rmu_sc0013020.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059480 Rroxscaffold_1G00059500
rosa_rugosa	Rorug05G0040700 Rorug05G0040900
rosa_samantha	Rh5AG133500 Rh5AG133800 Rh5BG131900 Rh5BG132300 Rh5CG144200 Rh5CG144500 Rh5DG133900 Rh5DG134200
rosa_wichuraiana	Rw5G011640 Rw5G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
AciI	CCGC	4 cut(s)	64, 556, 874, 970
AclI	AACGTT	1 cut(s)	577
AcoI	YGGCCR	2 cut(s)	951, 1004
AcuI	CTGAAG	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	61
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	4 cut(s)	12, 217, 743, 1091
AjnI	CCWGG	6 cut(s)	265, 402, 499, 814, 915, 937
AluBI	AGCT	9 cut(s)	161, 232, 327, 725, 760, 776, 947, 1026, 1111
AluI	AGCT	9 cut(s)	161, 232, 327, 725, 760, 776, 947, 1026, 1111
Alw26I	GTCTC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	871
AoxI	GGCC	3 cut(s)	142, 951, 1004
ApeKI	GCWGC	3 cut(s)	425, 636, 722
Asp700I	GAANNNNTTC	1 cut(s)	823
AspLEI	GCGC	1 cut(s)	814
AspS9I	GGNCC	3 cut(s)	143, 308, 1064
AsuHPI	GGTGA	3 cut(s)	410, 451, 596
AsuII	TTCGAA	1 cut(s)	379
AvaII	GGWCC	2 cut(s)	308, 1064
AxyI	CCTNAGG	1 cut(s)	485
BalI	TGGCCA	2 cut(s)	953, 1006
BbvI	GCAGC	3 cut(s)	437, 623, 734
BccI	CCATC	2 cut(s)	410, 800
BciT130I	CCWGG	6 cut(s)	267, 404, 501, 816, 917, 939
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	858
BisI	GCNGC	4 cut(s)	64, 426, 637, 723
BlsI	GCNGC	4 cut(s)	65, 427, 638, 724
Bme1390I	CCNGG	6 cut(s)	267, 404, 501, 816, 917, 939
Bme18I	GGWCC	2 cut(s)	308, 1064
BmgT120I	GGNCC	3 cut(s)	143, 308, 1064
BmiI	GGNNCC	1 cut(s)	1065
BmrFI	CCNGG	6 cut(s)	267, 404, 501, 816, 917, 939
BmsI	GCATC	4 cut(s)	709, 1027, 1060, 1125
BpmI	CTGGAG	1 cut(s)	40
Bpu14I	TTCGAA	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	500, 973
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse118I	RCCGGY	1 cut(s)	1165
Bse1I	ACTGG	1 cut(s)	671
Bse21I	CCTNAGG	1 cut(s)	485
Bse3DI	GCAATG	3 cut(s)	145, 369, 597
BseBI	CCWGG	6 cut(s)	267, 404, 501, 816, 917, 939
BseDI	CCNNGG	2 cut(s)	500, 973
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	3 cut(s)	145, 369, 597
BseMII	CTCAG	3 cut(s)	499, 675, 1134
BseNI	ACTGG	1 cut(s)	671
BseRI	GAGGAG	3 cut(s)	194, 337, 491
BseXI	GCAGC	3 cut(s)	437, 623, 734
BsgI	GTGCAG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	144, 953, 1006
BsiSI	CCGG	1 cut(s)	1166
BslFI	GGGAC	4 cut(s)	276, 785, 991, 1077
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	98
BsmFI	GGGAC	4 cut(s)	276, 785, 991, 1077
BsnI	GGCC	3 cut(s)	144, 953, 1006
Bsp119I	TTCGAA	1 cut(s)	379
BspACI	CCGC	4 cut(s)	64, 556, 874, 970
BspANI	GGCC	3 cut(s)	144, 953, 1006
BspCNI	CTCAG	3 cut(s)	498, 676, 1133
BspLI	GGNNCC	1 cut(s)	1065
BspT104I	TTCGAA	1 cut(s)	379
BsrDI	GCAATG	3 cut(s)	145, 369, 597
BsrFI	RCCGGY	1 cut(s)	1165
BsrI	ACTGG	1 cut(s)	671
BssAI	RCCGGY	1 cut(s)	1165
BssECI	CCNNGG	2 cut(s)	500, 973
BssNI	GRCGYC	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	973
Bst2UI	CCWGG	6 cut(s)	267, 404, 501, 816, 917, 939
Bst4CI	ACNGT	4 cut(s)	288, 305, 312, 1104
Bst6I	CTCTTC	2 cut(s)	53, 127
BstACI	GRCGYC	1 cut(s)	61
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	778
BstDEI	CTNAG	5 cut(s)	485, 684, 1052, 1120, 1173
BstEII	GGTNACC	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	814
BstMAI	GTCTC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	6 cut(s)	267, 404, 501, 816, 917, 939
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	6 cut(s)	265, 402, 499, 814, 915, 937
BstV1I	GCAGC	3 cut(s)	437, 623, 734
BstXI	CCANNNNNNTGG	2 cut(s)	196, 461
Bsu36I	CCTNAGG	1 cut(s)	485
BsuRI	GGCC	3 cut(s)	144, 953, 1006
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	39, 532, 771
Cac8I	GCNNGC	1 cut(s)	778
CaiI	CAGNNNCTG	1 cut(s)	871
CfoI	GCGC	1 cut(s)	814
Cfr10I	RCCGGY	1 cut(s)	1165
Cfr13I	GGNCC	3 cut(s)	143, 308, 1064
CseI	GACGC	2 cut(s)	69, 279
CsiI	ACCWGGT	1 cut(s)	402
DdeI	CTNAG	5 cut(s)	485, 684, 1052, 1120, 1173
EaeI	YGGCCR	2 cut(s)	951, 1004
Eam1104I	CTCTTC	2 cut(s)	53, 127
EarI	CTCTTC	2 cut(s)	53, 127
EciI	GGCGGA	1 cut(s)	959
Eco130I	CCWWGG	1 cut(s)	973
Eco32I	GATATC	3 cut(s)	540, 595, 863
Eco47I	GGWCC	2 cut(s)	308, 1064
Eco57I	CTGAAG	1 cut(s)	508
Eco81I	CCTNAGG	1 cut(s)	485
Eco91I	GGTNACC	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	1064
EcoO65I	GGTNACC	1 cut(s)	398
EcoRII	CCWGG	6 cut(s)	265, 402, 499, 814, 915, 937
EcoRV	GATATC	3 cut(s)	540, 595, 863
EcoT14I	CCWWGG	1 cut(s)	973
EcoT22I	ATGCAT	1 cut(s)	1118
ErhI	CCWWGG	1 cut(s)	973
FalI	AAGNNNNNCTT	2 cut(s)	82, 114
FaqI	GGGAC	4 cut(s)	276, 785, 991, 1077
FauNDI	CATATG	1 cut(s)	1059
Fnu4HI	GCNGC	4 cut(s)	64, 426, 637, 723
Fsp4HI	GCNGC	4 cut(s)	64, 426, 637, 723
FspBI	CTAG	1 cut(s)	858
GlaI	GCGC	1 cut(s)	813
GluI	GCNGC	4 cut(s)	64, 426, 637, 723
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	3 cut(s)	144, 953, 1006
HapII	CCGG	1 cut(s)	1166
HgaI	GACGC	2 cut(s)	69, 279
HhaI	GCGC	1 cut(s)	814
Hin1I	GRCGYC	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	812
HinP1I	GCGC	1 cut(s)	812
HindIII	AAGCTT	2 cut(s)	758, 945
HinfI	GANTC	4 cut(s)	241, 254, 854, 1019
HpaII	CCGG	1 cut(s)	1166
HphI	GGTGA	3 cut(s)	410, 451, 596
Hpy166II	GTNNAC	2 cut(s)	308, 337
Hpy188I	TCNGA	6 cut(s)	544, 647, 685, 909, 1123, 1141
Hpy188III	TCNNGA	3 cut(s)	57, 462, 858
Hpy8I	GTNNAC	2 cut(s)	308, 337
HpyAV	CCTTC	3 cut(s)	664, 670, 737
HpyCH4III	ACNGT	4 cut(s)	288, 305, 312, 1104
HpyCH4IV	ACGT	2 cut(s)	577, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	5 cut(s)	485, 684, 1052, 1120, 1173
HpySE526I	ACGT	2 cut(s)	577, 616
Hsp92I	GRCGYC	1 cut(s)	61
HspAI	GCGC	1 cut(s)	812
LmnI	GCTCC	3 cut(s)	181, 229, 324
Lsp1109I	GCAGC	3 cut(s)	437, 623, 734
LweI	GCATC	4 cut(s)	709, 1027, 1060, 1125
MabI	ACCWGGT	1 cut(s)	402
MaeI	CTAG	1 cut(s)	858
MaeII	ACGT	2 cut(s)	577, 616
MaeIII	GTNAC	1 cut(s)	398
MboII	GAAGA	5 cut(s)	40, 43, 114, 454, 457
MfeI	CAATTG	1 cut(s)	787
MlsI	TGGCCA	2 cut(s)	953, 1006
MluCI	AATT	7 cut(s)	69, 455, 702, 729, 787, 833, 1086
MluNI	TGGCCA	2 cut(s)	953, 1006
MlyI	GAGTC	2 cut(s)	848, 1028
Mox20I	TGGCCA	2 cut(s)	953, 1006
Mph1103I	ATGCAT	1 cut(s)	1118
MroXI	GAANNNNTTC	1 cut(s)	823
MscI	TGGCCA	2 cut(s)	953, 1006
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	2 cut(s)	194, 985
Msp20I	TGGCCA	2 cut(s)	953, 1006
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	1 cut(s)	1166
MspR9I	CCNGG	6 cut(s)	267, 404, 501, 816, 917, 939
MunI	CAATTG	1 cut(s)	787
MvaI	CCWGG	6 cut(s)	267, 404, 501, 816, 917, 939
MwoI	GCNNNNNNNGC	1 cut(s)	72
NdeI	CATATG	1 cut(s)	1059
NlaIV	GGNNCC	1 cut(s)	1065
NmuCI	GTSAC	1 cut(s)	398
NsiI	ATGCAT	1 cut(s)	1118
NspV	TTCGAA	1 cut(s)	379
PdmI	GAANNNNTTC	1 cut(s)	823
PfeI	GAWTC	2 cut(s)	241, 254
PkrI	GCNGC	4 cut(s)	65, 427, 638, 724
PleI	GAGTC	2 cut(s)	848, 1027
PpsI	GAGTC	2 cut(s)	848, 1027
PpuMI	RGGWCCY	1 cut(s)	1064
PsiI	TTATAA	1 cut(s)	612
Psp1406I	AACGTT	1 cut(s)	577
Psp5II	RGGWCCY	1 cut(s)	1064
Psp6I	CCWGG	6 cut(s)	265, 402, 499, 814, 915, 937
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	6 cut(s)	265, 402, 499, 814, 915, 937
PspN4I	GGNNCC	1 cut(s)	1065
PspPI	GGNCC	3 cut(s)	143, 308, 1064
PspPPI	RGGWCCY	1 cut(s)	1064
PstNI	CAGNNNCTG	1 cut(s)	871
PvuII	CAGCTG	1 cut(s)	725
RseI	CAYNNNNRTG	2 cut(s)	194, 985
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	4 cut(s)	64, 426, 637, 723
Sau96I	GGNCC	3 cut(s)	143, 308, 1064
SchI	GAGTC	2 cut(s)	848, 1028
ScrFI	CCNGG	6 cut(s)	267, 404, 501, 816, 917, 939
SexAI	ACCWGGT	1 cut(s)	402
SfaNI	GCATC	4 cut(s)	709, 1027, 1060, 1125
SfuI	TTCGAA	1 cut(s)	379
SinI	GGWCC	2 cut(s)	308, 1064
SmiMI	CAYNNNNRTG	2 cut(s)	194, 985
Sse9I	AATT	7 cut(s)	69, 455, 702, 729, 787, 833, 1086
SsiI	CCGC	4 cut(s)	64, 556, 874, 970
SspMI	CTAG	1 cut(s)	858
StyD4I	CCNGG	6 cut(s)	265, 402, 499, 814, 915, 937
StyI	CCWWGG	1 cut(s)	973
TaaI	ACNGT	4 cut(s)	288, 305, 312, 1104
TaiI	ACGT	2 cut(s)	580, 619
TaqI	TCGA	2 cut(s)	207, 379
TaqII	GACCGA	1 cut(s)	1140
TasI	AATT	7 cut(s)	69, 455, 702, 729, 787, 833, 1086
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	241, 254
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	3 cut(s)	46, 532, 771
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	3 cut(s)	425, 636, 722
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	1 cut(s)	400
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	3 cut(s)	46, 532, 771
VpaK11BI	GGWCC	2 cut(s)	308, 1064
XbaI	TCTAGA	1 cut(s)	857
XmnI	GAANNNNTTC	1 cut(s)	823
XspI	CTAG	1 cut(s)	858
Zsp2I	ATGCAT	1 cut(s)	1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.