AT1G30710

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10895252 .. 10897127
1876 bp
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UTR
Exon/CDS
Intron
AT1G30710.1

Sequence Viewer

Length: 1596 bp
ATGACATCTCTAACAACTCAAACCCTAATCATCACCATTTTTCTTCTTACAATCCCAACATCCTTCGCATCACCACCATCACTCGAAGACGTTTTCGCACAATGCGTCACCGATTTTAAACCTTCAAATCCAAAATCCCCAATCCAAAACTACATATACACTCAACGAAGCCCTAATTTCCTCACAATCCTTAACAACTACGTCCGTAACCTTCGTTACTTCAACAACATGACACGTAAACCCGTAGCGATTGTAGCTGCCGCGGATGTCACTCACATCCAGGCTACAATCACTTGTGCCAAGAAACTCGGCCTCCAGCTCCGGATCCGCAGTGGAGGACATGACTACGACGGTATGTCGTATTTATCAACCATTGATTTCGTTGTCCTAGACATGTTCAATCTCCGGTCTATCAATATAGATCCTAAACTCGACACCGCGTGGGTCCAATCCGGTGCTACGCTTGGAGAGATCTACTACGGAGTCGCCAACAAAAGCAATGACCTCCGTGGATTTCCTGCCGGAATCTGTCCTGGTTTAGGCGCTGGTGGACATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTTATCGATCGATAACATTATAGACGCTAAGATCGTTGACGCTAAAGGAAGAGTTTTGGACCGGAGCTCAATGGGAGAAGATCTTTTCTGGGCCTTACGTGGTGGTGGAGCTGCTAGTTTCTGTGTTGTCTTAGCTTGGAAGATTAAGCTTGTTCCGGTTCCAGCTAAAGTCACAGTCTTTAACATTGAAACGTTTGGAAACACAGGAAGCGTGAACACCACGGAACTTGTAGCCAAATGGCAAGAGATCGCAGACAAGATTGACAATGATCTGTTCATAAGATTAACTTTAGGCTCAAGCAACAAAACCGTGAAGGCTTCTTTCATGGGAATGTACCTCGGAAACTCATCGAATCTTCTAGAAATCATGAACGCGAAATTCCCTGAGCTTGGTCTGATCAAAAGAGAGTGTATTGAAATGAAATGGATCGAATCGGTTCTGTTCTGGCTCGGTATCCCACCCGGTACAGCACCAACAACGAGTATGCTAAACCGGATCCCACAAAAGCAAATCTACCTCAAGAGAAAATCCGATTACGTCCAAAAACCGATTTCACGAACCGGTTTAGAGTCAATATTCAAGATCATGACAGAGAACGAGAACGTCACAATGGCTTTTAACCCTTACGGAGGGAGGATGAGTGAGATTCCATCGACCGAGACCGCTTTCCCTCACAGAGCAGGAAACATGTTCAAGATTCAGTACGCAGCAAACTGGTTCGTGCCAGGTGAAGCAGTGGCTAAAGATTGCTTGAGCCAGACAGAAAGATTGTTCGAGGCAATGAGCCCTTACGTGTCAAAGAATCCAAGAGAGGCGTTTTTGAACTATAGAGACGTTGACATTGGAAAGAGCTTAAACTCAACGTACGAGGAAGGTAAAGTGTACGGATTTAAGTATTTTAAGGATAACTTCGAGAAATTGGTTAAGATCAAGAGCAGAGTTGATCCCGACAACTTTTTCCGGTACGAGCAGAGCATTCCAGTGCTCTCCAGCCACTAG
Functional Annotation

Protein Analysis

531

Amino Acids

59.33

Weight (kDa)

9.06

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 82 - 219 2.5e-22 FAD binding domain
BBE PF08031 471 - 526 3.3e-18 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013793)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 263, 440, 971
AccIII TCCGGA 1 cut(s) 321
AciI CCGC 6 cut(s) 261, 263, 328, 438, 561, 1260
AclI AACGTT 1 cut(s) 788
AclWI GGATC 7 cut(s) 319, 332, 416, 1031, 1087, 1100, 1535
AcsI RAATTY 1 cut(s) 974
AdeI CACNNNGTG 1 cut(s) 441
AfaI GTAC 6 cut(s) 932, 1063, 1301, 1463, 1481, 1562
AfiI CCNNNNNNNGG 3 cut(s) 539, 986, 1226
AflIII ACRYGT 4 cut(s) 233, 393, 1284, 1389
AgeI ACCGGT 1 cut(s) 1157
AgsI TTSAA 8 cut(s) 126, 223, 400, 785, 1013, 1177, 1291, 1420
AhdI GACNNNNNGTC 1 cut(s) 355
AjnI CCWGG 3 cut(s) 279, 532, 1321
AluBI AGCT 9 cut(s) 257, 319, 663, 707, 731, 745, 761, 985, 1449
AluI AGCT 9 cut(s) 257, 319, 663, 707, 731, 745, 761, 985, 1449
Alw21I GWGCWC 2 cut(s) 665, 1584
Alw26I GTCTC 2 cut(s) 1250, 1422
AlwI GGATC 7 cut(s) 319, 332, 416, 1031, 1087, 1100, 1535
Aor13HI TCCGGA 1 cut(s) 321
AoxI GGCC 2 cut(s) 310, 687
ApeKI GCWGC 3 cut(s) 257, 707, 1304
ApoI RAATTY 1 cut(s) 974
AsiGI ACCGGT 1 cut(s) 1157
Asp700I GAANNNNTTC 1 cut(s) 1032
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 3 cut(s) 445, 655, 687
AsuC2I CCSGG 1 cut(s) 1059
AsuHPI GGTGA 4 cut(s) 25, 63, 100, 1337
AvaII GGWCC 2 cut(s) 445, 655
BamHI GGATCC 2 cut(s) 324, 1092
BanII GRGCYC 2 cut(s) 665, 1385
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 2 cut(s) 665, 1584
BbvI GCAGC 3 cut(s) 244, 694, 1316
BccI CCATC 2 cut(s) 85, 1255
BciT130I CCWGG 3 cut(s) 281, 534, 1323
BciVI GTATCC 1 cut(s) 1061
BclI TGATCA 1 cut(s) 993
BcnI CCSGG 1 cut(s) 1059
BcoDI GTCTC 2 cut(s) 1250, 1422
BfaI CTAG 4 cut(s) 389, 711, 956, 1594
BfmI CTRYAG 1 cut(s) 1423
BfoI RGCGCY 1 cut(s) 546
BfuI GTATCC 1 cut(s) 1061
BglII AGATCT 2 cut(s) 471, 676
BisI GCNGC 4 cut(s) 258, 261, 708, 1305
BlsI GCNGC 4 cut(s) 259, 262, 709, 1306
Bme1390I CCNGG 4 cut(s) 281, 534, 1059, 1323
Bme18I GGWCC 2 cut(s) 445, 655
BmeRI GACNNNNNGTC 1 cut(s) 355
BmgT120I GGNCC 3 cut(s) 445, 655, 687
BmiI GGNNCC 4 cut(s) 326, 446, 756, 1094
BmrFI CCNGG 4 cut(s) 281, 534, 1059, 1323
BmsI GCATC 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 93
BpmI CTGGAG 2 cut(s) 299, 1570
Bpu10I CCTNAGC 1 cut(s) 981
BpuEI CTTGAG 3 cut(s) 877, 1100, 1369
BpuMI CCSGG 1 cut(s) 1059
Bsa29I ATCGAT 2 cut(s) 602, 606
BsaAI YACGTR 3 cut(s) 236, 695, 1390
BsaI GGTCTC 1 cut(s) 1250
BsaJI CCNNGG 4 cut(s) 261, 508, 816, 934
BsaWI WCCGGW 8 cut(s) 321, 405, 452, 657, 751, 1089, 1157, 1557
BsaXI ACNNNNNCTCC 4 cut(s) 297, 327, 1222, 1252
Bsc4I CCNNNNNNNGG 3 cut(s) 539, 986, 1226
Bse118I RCCGGY 1 cut(s) 1157
Bse1I ACTGG 2 cut(s) 1316, 1577
Bse3DI GCAATG 2 cut(s) 505, 1383
BseAI TCCGGA 1 cut(s) 321
BseBI CCWGG 3 cut(s) 281, 534, 1323
BseCI ATCGAT 2 cut(s) 602, 606
BseDI CCNNGG 4 cut(s) 261, 508, 816, 934
BseGI GGATG 4 cut(s) 59, 271, 276, 1239
BseLI CCNNNNNNNGG 3 cut(s) 539, 986, 1226
BseMI GCAATG 2 cut(s) 505, 1383
BseMII CTCAG 1 cut(s) 972
BseNI ACTGG 2 cut(s) 1316, 1577
BseXI GCAGC 3 cut(s) 244, 694, 1316
Bsh1236I CGCG 3 cut(s) 263, 440, 971
Bsh1285I CGRYCG 2 cut(s) 606, 1254
BshFI GGCC 2 cut(s) 312, 689
BshTI ACCGGT 1 cut(s) 1157
BshVI ATCGAT 2 cut(s) 602, 606
BsiEI CGRYCG 2 cut(s) 606, 1254
BsiHKAI GWGCWC 2 cut(s) 665, 1584
BsiWI CGTACG 1 cut(s) 1461
BslI CCNNNNNNNGG 3 cut(s) 539, 986, 1226
BsmAI GTCTC 2 cut(s) 1250, 1422
BsmBI CGTCTC 1 cut(s) 1422
BsmI GAATGC 1 cut(s) 1572
BsnI GGCC 2 cut(s) 312, 689
Bso31I GGTCTC 1 cut(s) 1250
Bsp1286I GDGCHC 3 cut(s) 665, 1385, 1584
Bsp13I TCCGGA 1 cut(s) 321
BspACI CCGC 6 cut(s) 261, 263, 328, 438, 561, 1260
BspANI GGCC 2 cut(s) 312, 689
BspCNI CTCAG 1 cut(s) 973
BspDI ATCGAT 2 cut(s) 602, 606
BspEI TCCGGA 1 cut(s) 321
BspFNI CGCG 3 cut(s) 263, 440, 971
BspHI TCATGA 2 cut(s) 963, 1182
BspLI GGNNCC 4 cut(s) 326, 446, 756, 1094
BspPI GGATC 7 cut(s) 319, 332, 416, 1031, 1087, 1100, 1535
BspTNI GGTCTC 1 cut(s) 1250
BsrDI GCAATG 2 cut(s) 505, 1383
BsrFI RCCGGY 1 cut(s) 1157
BsrI ACTGG 2 cut(s) 1316, 1577
BssAI RCCGGY 1 cut(s) 1157
BssECI CCNNGG 4 cut(s) 261, 508, 816, 934
Bst2UI CCWGG 3 cut(s) 281, 534, 1323
Bst4CI ACNGT 4 cut(s) 353, 596, 772, 907
Bst6I CTCTTC 1 cut(s) 640
BstBAI YACGTR 3 cut(s) 236, 695, 1390
BstDEI CTNAG 3 cut(s) 624, 727, 981
BstDSI CCRYGG 3 cut(s) 261, 508, 816
BstENI CCTNNNNNAGG 2 cut(s) 537, 1224
BstF5I GGATG 4 cut(s) 59, 271, 276, 1239
BstFNI CGCG 3 cut(s) 263, 440, 971
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 1 cut(s) 545
BstMAI GTCTC 2 cut(s) 1250, 1422
BstMCI CGRYCG 2 cut(s) 606, 1254
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 3 cut(s) 281, 534, 1323
BstNSI RCATGY 2 cut(s) 397, 1288
BstSCI CCNGG 4 cut(s) 279, 532, 1057, 1321
BstSFI CTRYAG 1 cut(s) 1423
BstUI CGCG 3 cut(s) 263, 440, 971
BstV1I GCAGC 3 cut(s) 244, 694, 1316
BstV2I GAAGAC 1 cut(s) 93
BstX2I RGATCY 5 cut(s) 324, 421, 471, 676, 1092
BstYI RGATCY 5 cut(s) 324, 421, 471, 676, 1092
Bsu15I ATCGAT 2 cut(s) 602, 606
BsuI GTATCC 1 cut(s) 1061
BsuRI GGCC 2 cut(s) 312, 689
BsuTUI ATCGAT 2 cut(s) 602, 606
BtgI CCRYGG 3 cut(s) 261, 508, 816
BtsCI GGATG 4 cut(s) 59, 271, 276, 1239
BtsI GCAGTG 2 cut(s) 337, 1338
BtsIMutI CAGTG 3 cut(s) 337, 1338, 1584
CciI TCATGA 2 cut(s) 963, 1182
CfoI GCGC 1 cut(s) 545
Cfr10I RCCGGY 1 cut(s) 1157
Cfr13I GGNCC 3 cut(s) 445, 655, 687
Cfr42I CCGCGG 1 cut(s) 264
ClaI ATCGAT 2 cut(s) 602, 606
CseI GACGC 3 cut(s) 94, 629, 644
Csp6I GTAC 6 cut(s) 931, 1062, 1300, 1462, 1480, 1561
CspAI ACCGGT 1 cut(s) 1157
CspCI CAANNNNNGTGG 2 cut(s) 805, 840
CviAII CATG 8 cut(s) 229, 341, 394, 580, 922, 964, 1183, 1285
CviQI GTAC 6 cut(s) 931, 1062, 1300, 1462, 1480, 1561
DdeI CTNAG 3 cut(s) 624, 727, 981
DraI TTTAAA 1 cut(s) 118
DraIII CACNNNGTG 1 cut(s) 441
DriI GACNNNNNGTC 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 640
Eam1105I GACNNNNNGTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 640
Ecl136II GAGCTC 1 cut(s) 663
Eco24I GRGCYC 2 cut(s) 665, 1385
Eco31I GGTCTC 1 cut(s) 1250
Eco47I GGWCC 2 cut(s) 445, 655
Eco53kI GAGCTC 1 cut(s) 663
EcoICRI GAGCTC 1 cut(s) 663
EcoNI CCTNNNNNAGG 2 cut(s) 537, 1224
EcoRII CCWGG 3 cut(s) 279, 532, 1321
EcoT38I GRGCYC 2 cut(s) 665, 1385
Esp3I CGTCTC 1 cut(s) 1422
FaeI CATG 8 cut(s) 232, 344, 397, 583, 925, 967, 1186, 1288
FalI AAGNNNNNCTT 4 cut(s) 868, 900, 1490, 1522
FatI CATG 8 cut(s) 228, 340, 393, 579, 921, 963, 1182, 1284
FbaI TGATCA 1 cut(s) 993
Fnu4HI GCNGC 4 cut(s) 258, 261, 708, 1305
FokI GGATG 4 cut(s) 46, 263, 278, 1246
FriOI GRGCYC 2 cut(s) 665, 1385
Fsp4HI GCNGC 4 cut(s) 258, 261, 708, 1305
FspBI CTAG 4 cut(s) 389, 711, 956, 1594
GlaI GCGC 1 cut(s) 544
GluI GCNGC 4 cut(s) 258, 261, 708, 1305
GsuI CTGGAG 2 cut(s) 299, 1570
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 2 cut(s) 312, 689
HgaI GACGC 3 cut(s) 94, 629, 644
HhaI GCGC 1 cut(s) 545
Hin1II CATG 8 cut(s) 232, 344, 397, 583, 925, 967, 1186, 1288
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HincII GTYRAC 2 cut(s) 634, 1435
HindII GTYRAC 2 cut(s) 634, 1435
HindIII AAGCTT 1 cut(s) 743
HinfI GANTC 8 cut(s) 483, 525, 949, 1028, 1166, 1243, 1294, 1399
HphI GGTGA 4 cut(s) 25, 63, 100, 1337
Hpy166II GTNNAC 6 cut(s) 239, 551, 634, 811, 1435, 1480
Hpy188I TCNGA 3 cut(s) 938, 993, 1129
Hpy8I GTNNAC 6 cut(s) 239, 551, 634, 811, 1435, 1480
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 5 cut(s) 73, 132, 221, 904, 1463
HpyCH4III ACNGT 4 cut(s) 353, 596, 772, 907
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 3 cut(s) 624, 727, 981
Hsp92II CATG 8 cut(s) 232, 344, 397, 583, 925, 967, 1186, 1288
HspAI GCGC 1 cut(s) 543
Kpn2I TCCGGA 1 cut(s) 321
Ksp22I TGATCA 1 cut(s) 993
KspI CCGCGG 1 cut(s) 264
LmnI GCTCC 3 cut(s) 324, 660, 704
Lsp1109I GCAGC 3 cut(s) 244, 694, 1316
LweI GCATC 1 cut(s) 77
MaeI CTAG 4 cut(s) 389, 711, 956, 1594
MaeIII GTNAC 7 cut(s) 106, 206, 215, 268, 569, 766, 1201
MboII GAAGA 6 cut(s) 35, 98, 657, 686, 748, 944
MflI RGATCY 5 cut(s) 324, 421, 471, 676, 1092
MhlI GDGCHC 3 cut(s) 665, 1385, 1584
MluCI AATT 3 cut(s) 175, 974, 1514
MlyI GAGTC 2 cut(s) 492, 1175
MroI TCCGGA 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 1032
MslI CAYNNNNRTG 2 cut(s) 926, 1577
MspA1I CMGCKG 1 cut(s) 263
MspR9I CCNGG 4 cut(s) 281, 534, 1059, 1323
Mva1269I GAATGC 1 cut(s) 1572
MvaI CCWGG 3 cut(s) 281, 534, 1323
MvnI CGCG 3 cut(s) 263, 440, 971
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 1059
NlaIII CATG 8 cut(s) 232, 344, 397, 583, 925, 967, 1186, 1288
NlaIV GGNNCC 4 cut(s) 326, 446, 756, 1094
NmeAIII GCCGAG 1 cut(s) 288
NmuCI GTSAC 4 cut(s) 106, 268, 766, 1201
NspI RCATGY 2 cut(s) 397, 1288
PagI TCATGA 2 cut(s) 963, 1182
PciI ACATGT 2 cut(s) 393, 1284
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 627
PctI GAATGC 1 cut(s) 1572
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 6 cut(s) 525, 949, 1028, 1243, 1294, 1399
Pfl23II CGTACG 1 cut(s) 1461
PinAI ACCGGT 1 cut(s) 1157
PkrI GCNGC 4 cut(s) 259, 262, 709, 1306
Ple19I CGATCG 1 cut(s) 606
PleI GAGTC 2 cut(s) 491, 1174
PpsI GAGTC 2 cut(s) 491, 1174
Ppu21I YACGTR 3 cut(s) 236, 695, 1390
PscI ACATGT 2 cut(s) 393, 1284
Psp124BI GAGCTC 1 cut(s) 665
Psp1406I AACGTT 1 cut(s) 788
Psp6I CCWGG 3 cut(s) 279, 532, 1321
PspGI CCWGG 3 cut(s) 279, 532, 1321
PspLI CGTACG 1 cut(s) 1461
PspN4I GGNNCC 4 cut(s) 326, 446, 756, 1094
PspPI GGNCC 3 cut(s) 445, 655, 687
PsuI RGATCY 5 cut(s) 324, 421, 471, 676, 1092
PvuI CGATCG 1 cut(s) 606
RsaI GTAC 6 cut(s) 932, 1063, 1301, 1463, 1481, 1562
RsaNI GTAC 6 cut(s) 931, 1062, 1300, 1462, 1480, 1561
RseI CAYNNNNRTG 2 cut(s) 926, 1577
SacI GAGCTC 1 cut(s) 665
SacII CCGCGG 1 cut(s) 264
SatI GCNGC 4 cut(s) 258, 261, 708, 1305
Sau96I GGNCC 3 cut(s) 445, 655, 687
SchI GAGTC 2 cut(s) 492, 1175
ScrFI CCNGG 4 cut(s) 281, 534, 1059, 1323
SduI GDGCHC 3 cut(s) 665, 1385, 1584
SfaNI GCATC 1 cut(s) 77
SfcI CTRYAG 1 cut(s) 1423
Sfr303I CCGCGG 1 cut(s) 264
SgrBI CCGCGG 1 cut(s) 264
SinI GGWCC 2 cut(s) 445, 655
SmiMI CAYNNNNRTG 2 cut(s) 926, 1577
SmlI CTYRAG 3 cut(s) 892, 1115, 1348
SmoI CTYRAG 3 cut(s) 892, 1115, 1348
Sse9I AATT 3 cut(s) 175, 974, 1514
SsiI CCGC 6 cut(s) 261, 263, 328, 438, 561, 1260
SspI AATATT 1 cut(s) 1173
SspMI CTAG 4 cut(s) 389, 711, 956, 1594
SstI GAGCTC 1 cut(s) 665
StyD4I CCNGG 4 cut(s) 279, 532, 1057, 1321
TaaI ACNGT 4 cut(s) 353, 596, 772, 907
TaqI TCGA 9 cut(s) 84, 432, 602, 606, 947, 1026, 1250, 1371, 1509
TaqII GACCGA 1 cut(s) 1268
TasI AATT 3 cut(s) 175, 974, 1514
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 6 cut(s) 525, 949, 1028, 1243, 1294, 1399
TscAI CASTG 3 cut(s) 337, 1338, 1584
TseFI GTSAC 4 cut(s) 106, 268, 766, 1201
TseI GCWGC 3 cut(s) 257, 707, 1304
Tsp45I GTSAC 4 cut(s) 106, 268, 766, 1201
TspDTI ATGAA 4 cut(s) 862, 910, 980, 1031
TspGWI ACGGA 7 cut(s) 194, 495, 497, 588, 833, 1239, 1497
TspRI CASTG 3 cut(s) 337, 1338, 1584
VpaK11BI GGWCC 2 cut(s) 445, 655
XagI CCTNNNNNAGG 2 cut(s) 537, 1224
XapI RAATTY 1 cut(s) 974
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 2 cut(s) 397, 1288
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 4 cut(s) 389, 711, 956, 1594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.