Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013793

Physical Location & Seq

Genomic Coordinates Forward (+)

40416059 .. 40416892

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1268700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTAGGGTCAATGACTCCACATTTAAATAGCCTTGTCAGACCTTTCCATGAGTCTGAAATCCAAGCAGCTGTTCTTTGCAGCAAGAAACTTGGCTTGCAAGTCAGGGTTAGAAGTGGAGGACATGATTATGAAGGCCCATCTTACCTCTGCAAAACCCCATTTATCATCATTGACTTGATCAATCTCCGGTACATTGAGGTCAACCTTGCAGATGAGACAGCTTGGGCTCAGTCAGGAGCCACACTTGGTGAGCTTTATTATAGCATTGCCAAGAAAAGTTGGGTCCATGGATTTTCAGGAGGATTGTGCCCTACTGTTGGTATTGGAGGGCACTTGAGTGGAGGTGGGTTTGGAATCCTAATCAGGAAGCACGGCCTGGCAGCTGATAATGTCGTAGATGCTCGATTCATTGCTATCCAAAAATCCCCTCTGGAAGATGAATTTCAAAGCCAAATCCGACTTTGTGAAGAACCCAATACCCGAACCGGGACTCCAAGGGATTTGGGAGAGGTTTCAGCAGGAACAAAATTACATTACAAGGATCTTGATCTGGGTGCCAACAAGGAAGACAACACAAGCTTCTTGGTGGCAAGTGCTTGGAGAACAAGGTACTTCAAGGGTAACTTCAAGAGGCTGGCACAAGTGAAGAGCAAGGTTGATCCAGATAACTTCTTCAGAAATGAACAAAGCATTCCTCCTCTTCCTTCTTTGTTTCCAATCACAGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009505 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0030312 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

245

Amino Acids

26.91

Weight (kDa)

7.71

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	12 - 138	3.4e-22	FAD binding domain
BBE	PF08031	180 - 233	3.5e-17	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30710 AT1G30720 AT1G30730 AT1G34575 AT2G34810
fragaria_vesca	FvH4_3g11041
malus_domestica	MD05G1267400.v1.1 MD05G1268700.v1.1
prunus_persica	Prupe.4G098800_v2.0.a1
pyrus_communis	pycom05g25040
rosa_chinensis	RchiOBHm_Chr5g0017761
rosa_laevigata	RLG00000032313
rosa_multiflora	Rmu_sc0009555.1_g000004
rosa_roxburghii	Rroxscaffold_1G00059720 Rroxscaffold_1G00059730
rosa_rugosa	Rorug05G0038500
rosa_wichuraiana	Rw5G011420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	557
AclWI	GGATC	2 cut(s)	552, 656
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	1 cut(s)	661
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	2 cut(s)	194, 614
AfiI	CCNNNNNNNGG	2 cut(s)	320, 489
AgsI	TTSAA	3 cut(s)	449, 619, 631
AjnI	CCWGG	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AleI	CACNNNNGTG	1 cut(s)	339
AloI	GAACNNNNNNTCC	2 cut(s)	478, 510
AluBI	AGCT	5 cut(s)	71, 224, 256, 386, 582
AluI	AGCT	5 cut(s)	71, 224, 256, 386, 582
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	2 cut(s)	552, 656
AoxI	GGCC	2 cut(s)	136, 376
ApeKI	GCWGC	3 cut(s)	68, 81, 383
ApoI	RAATTY	1 cut(s)	443
AspS9I	GGNCC	2 cut(s)	137, 286
AsuC2I	CCSGG	1 cut(s)	490
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	286
BaeGI	GKGCMC	2 cut(s)	314, 336
BanI	GGYRCC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	576
BbvI	GCAGC	3 cut(s)	80, 93, 395
BccI	CCATC	1 cut(s)	148
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	212
BisI	GCNGC	3 cut(s)	69, 82, 384
BlsI	GCNGC	3 cut(s)	70, 83, 385
Bme1390I	CCNGG	2 cut(s)	380, 490
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	137, 286
BmiI	GGNNCC	3 cut(s)	241, 287, 559
BmrFI	CCNGG	2 cut(s)	380, 490
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	490
BsaBI	GATNNNNATC	1 cut(s)	549
BsaJI	CCNNGG	2 cut(s)	289, 497
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 489
Bse3DI	GCAATG	2 cut(s)	267, 411
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	289, 497
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	2 cut(s)	320, 489
BseMI	GCAATG	2 cut(s)	267, 411
BseMII	CTCAG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	690
BseSI	GKGCMC	2 cut(s)	314, 336
BseXI	GCAGC	3 cut(s)	80, 93, 395
BshFI	GGCC	2 cut(s)	138, 378
BshNI	GGYRCC	1 cut(s)	557
BsiSI	CCGG	2 cut(s)	190, 489
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	2 cut(s)	320, 489
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	693
BsnI	GGCC	2 cut(s)	138, 378
Bsp1286I	GDGCHC	3 cut(s)	232, 314, 336
Bsp143I	GATC	4 cut(s)	180, 544, 550, 661
Bsp19I	CCATGG	1 cut(s)	289
BspANI	GGCC	2 cut(s)	138, 378
BspCNI	CTCAG	1 cut(s)	244
BspLI	GGNNCC	3 cut(s)	241, 287, 559
BspPI	GGATC	2 cut(s)	552, 656
BspQI	GCTCTTC	1 cut(s)	644
BspT107I	GGYRCC	1 cut(s)	557
BsrDI	GCAATG	2 cut(s)	267, 411
BssECI	CCNNGG	2 cut(s)	289, 497
BssMI	GATC	4 cut(s)	180, 544, 550, 661
BssT1I	CCWWGG	2 cut(s)	289, 497
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	2 cut(s)	644, 708
BstC8I	GCNNGC	2 cut(s)	98, 639
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	289
BstKTI	GATC	4 cut(s)	183, 547, 553, 664
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	180, 544, 550, 661
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	378, 488
BstSLI	GKGCMC	2 cut(s)	314, 336
BstV1I	GCAGC	3 cut(s)	80, 93, 395
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	2 cut(s)	138, 378
BtgI	CCRYGG	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	98, 639
Cfr13I	GGNCC	2 cut(s)	137, 286
Csp6I	GTAC	2 cut(s)	193, 613
CviAII	CATG	3 cut(s)	50, 125, 290
CviQI	GTAC	2 cut(s)	193, 613
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	4 cut(s)	182, 546, 552, 663
DpnII	GATC	4 cut(s)	180, 544, 550, 661
DraI	TTTAAA	1 cut(s)	27
DraIII	CACNNNGTG	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	644, 708
EarI	CTCTTC	2 cut(s)	644, 708
Eco130I	CCWWGG	2 cut(s)	289, 497
Eco24I	GRGCYC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	661
EcoRII	CCWGG	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	289, 497
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	2 cut(s)	289, 497
FaeI	CATG	3 cut(s)	53, 128, 293
FaiI	YATR	5 cut(s)	51, 126, 132, 264, 291
FalI	AAGNNNNNCTT	2 cut(s)	611, 643
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	3 cut(s)	49, 124, 289
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	69, 82, 384
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	69, 82, 384
GluI	GCNGC	3 cut(s)	69, 82, 384
HaeIII	GGCC	2 cut(s)	138, 378
HapII	CCGG	2 cut(s)	190, 489
Hin1II	CATG	3 cut(s)	53, 128, 293
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	5 cut(s)	16, 53, 357, 408, 493
HpaII	CCGG	2 cut(s)	190, 489
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	41, 58, 461, 680
Hpy188III	TCNNGA	7 cut(s)	237, 300, 367, 434, 548, 631, 665
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	128, 717
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	4 cut(s)	81, 100, 153, 212
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	53, 128, 293
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	180, 544, 550, 661
LguI	GCTCTTC	1 cut(s)	644
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	3 cut(s)	80, 93, 395
LweI	GCATC	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	4 cut(s)	182, 546, 552, 663
MboI	GATC	4 cut(s)	180, 544, 550, 661
MboII	GAAGA	6 cut(s)	449, 482, 581, 661, 667, 695
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	3 cut(s)	232, 314, 336
MluCI	AATT	2 cut(s)	443, 530
MlyI	GAGTC	3 cut(s)	10, 62, 487
MmeI	TCCRAC	1 cut(s)	484
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	2 cut(s)	129, 339
MspA1I	CMGCKG	2 cut(s)	71, 386
MspI	CCGG	2 cut(s)	190, 489
MspR9I	CCNGG	2 cut(s)	380, 490
Mva1269I	GAATGC	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	380
NciI	CCSGG	1 cut(s)	490
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	4 cut(s)	180, 544, 550, 661
NlaIII	CATG	3 cut(s)	53, 128, 293
NlaIV	GGNNCC	3 cut(s)	241, 287, 559
OliI	CACNNNNGTG	1 cut(s)	339
PciSI	GCTCTTC	1 cut(s)	644
PctI	GAATGC	1 cut(s)	693
PfeI	GAWTC	2 cut(s)	357, 408
PkrI	GCNGC	3 cut(s)	70, 83, 385
PleI	GAGTC	3 cut(s)	10, 61, 487
PpsI	GAGTC	3 cut(s)	10, 61, 487
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	3 cut(s)	241, 287, 559
PspPI	GGNCC	2 cut(s)	137, 286
PsuI	RGATCY	1 cut(s)	544
PvuII	CAGCTG	2 cut(s)	71, 386
RsaI	GTAC	2 cut(s)	194, 614
RsaNI	GTAC	2 cut(s)	193, 613
RseI	CAYNNNNRTG	2 cut(s)	129, 339
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	3 cut(s)	69, 82, 384
Sau3AI	GATC	4 cut(s)	180, 544, 550, 661
Sau96I	GGNCC	2 cut(s)	137, 286
SchI	GAGTC	3 cut(s)	10, 62, 487
ScrFI	CCNGG	2 cut(s)	380, 490
SduI	GDGCHC	3 cut(s)	232, 314, 336
SfaNI	GCATC	1 cut(s)	391
SinI	GGWCC	1 cut(s)	286
SmiI	ATTTAAAT	1 cut(s)	27
SmiMI	CAYNNNNRTG	2 cut(s)	129, 339
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	2 cut(s)	443, 530
StyD4I	CCNGG	2 cut(s)	378, 488
StyI	CCWWGG	2 cut(s)	289, 497
SwaI	ATTTAAAT	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	406
TasI	AATT	2 cut(s)	443, 530
TfiI	GAWTC	2 cut(s)	357, 408
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseI	GCWGC	3 cut(s)	68, 81, 383
TspDTI	ATGAA	4 cut(s)	147, 400, 456, 699
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.