AT2G34810

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013793
Physical Location & Seq
Forward (+)
14685170 .. 14687216
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34810.1

Sequence Viewer

Length: 1623 bp
ATGAAGTTTTGGTCACGACCATTAACGTTTCTTATAATTATTATCTATCTCATAATTCAACAAGTCAACTCATCACCACCGTCATTATCTATACCGGAGCATTTTCTCCGATGCCTCGACACTCAACCATCCGACCACGGCAGTCCCAACTCAAGAACCGCCGTGATCCCAACAAACTCATCTTTCTCAACAAACCTAATGAACGGCGTCAGAAACCTCCGGTTCGCTTCTGTCTCCACAAGAAAACCAGAAGTTATCGTCGCCGCCGTCACCGAAACTCACATAAGAGCAACAATCTCTTGCTGCAAACTCCTAAACCTCGAGCTAAGAATCCGAAGCGGAGGCCACGACTACGAAGGCTTCTCCTACACTTCTCCGGTACCTTTCGTAATCTTAGACATGTACAACTTCAACAAAATCGATATCAACATGAAAGACGAAACCGTTTGGATCCAATCCGGAGCTTCACTAGGTCAGCTTTACTATAACATTGCAAGTAAAAGCAAAGTCCACGCTTTTCCCGCCGGAGTTTGTCCTAAAGTCGGCGCCGGAGGACATTTCAGCGGCGGAGGATTCGGTAACCTCATGAGAAAATACGGTTTATCCATTGATCATATAATCGACGCTCAAATCATGGACGCCAACGGTAAAGTGTACCGTAACCGTCAAGCTATGGGAGAAGACGTGTTTTGGGCTATTCGCGGCGGAGGCGGCGGAAGCTACGGAGTCATTCTTGCCTGGAAGATAAAACTCGTTAGGGTTCCGGAGAAAGTCACAGTTTTTAAACTAGAAAGAACGGTGAGAGAAGGAGCCGTTGATTTAGTTCATAAATGGCAACAAGTAGCTCCGGTTATCGACAGAGATTTGTTTATCCGGTTAGAGATTAAACCAATAAACCGGAAAATCTCAAAAGGTAAGACGATTAAAGTCTCCTTCATCGGAATGTTTCTTGGTTTACCTGAGAGACTTTTAAACATAACGAAACAGAGTTTCCCTGAGCTACATTTAACGAAAGAAGATTGTATGGTCAAGAAATGGATCGAATCTAGTGTTTTCTGGGCGAATTATCCAGAAAAAGCACCGATAGAGTTACTTCTCAAAAGAGTATCAACCAACGAATACTACTGGAAACGTACTTCAGATTTTGTTCAAGCACCAATCTCAAAACAGGGTCTTGCAAAGATTTTTCAAACAATGATTGATCATTCGCCACTTCCACGACGAGTTTGGATGCAATGGAATCCATGGGGAGGGAAAATGGCTGAGATAGCGTCTGATGCGACGGCGTTTGTGCATAGAGGTGGTAATGTTTTCATGATTGAGCATTTCATGAATTGGTATAGACCTGGAGATGAGCTTGAAGAGAAGTTCTTGGCGATTGCAAGAAGTTTTAAAGAAGCTATGGCTCCGTTTGTTTCCAAGAATCCGAGAGAAGCTTTCTTTAATTATAGAGATGTCGATATCGGAATTACTACGCCGGGGTATAATGCGACGTATGAAGGAGCTAAGGTTTATGGGGATAGTTATTTCAAAGGGAATTATTTGAGATTGGTTAAGATTAAAGCCCGGTTCGACCGGACTAATTTTTTCCGGTCTCAGCAAGGGATTCCGGTTCTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009505 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0030312 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

540

Amino Acids

61.31

Weight (kDa)

9.63

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 83 - 220 4.8e-22 FAD binding domain
BBE PF08031 479 - 537 4.7e-17 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013793)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30710 AT1G30720 AT1G30730 AT1G34575 AT2G34810
fragaria_vesca FvH4_3g11041
malus_domestica MD05G1267400.v1.1 MD05G1268700.v1.1
prunus_persica Prupe.4G098800_v2.0.a1
pyrus_communis pycom05g25040
rosa_chinensis RchiOBHm_Chr5g0017761
rosa_laevigata RLG00000032313
rosa_multiflora Rmu_sc0009555.1_g000004
rosa_roxburghii Rroxscaffold_1G00059720 Rroxscaffold_1G00059730
rosa_rugosa Rorug05G0038500
rosa_wichuraiana Rw5G011420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 35
Acc65I GGTACC 1 cut(s) 379
AccB1I GGYRCC 2 cut(s) 379, 545
AccII CGCG 1 cut(s) 702
AccIII TCCGGA 2 cut(s) 458, 763
AclI AACGTT 1 cut(s) 26
AclWI GGATC 4 cut(s) 160, 445, 458, 1046
AcuI CTGAAG 1 cut(s) 1122
AcyI GRCGYC 3 cut(s) 207, 546, 639
AfaI GTAC 4 cut(s) 381, 404, 656, 1135
AfiI CCNNNNNNNGG 2 cut(s) 542, 1250
AflIII ACRYGT 2 cut(s) 399, 684
AgsI TTSAA 6 cut(s) 59, 412, 1151, 1190, 1361, 1531
AjiI CACGTC 1 cut(s) 685
AjnI CCWGG 2 cut(s) 737, 1345
Alw26I GTCTC 4 cut(s) 238, 934, 958, 1599
AlwI GGATC 4 cut(s) 160, 445, 458, 1046
Ama87I CYCGRG 1 cut(s) 320
Aor13HI TCCGGA 2 cut(s) 458, 763
AoxI GGCC 1 cut(s) 343
ApeKI GCWGC 1 cut(s) 303
Asp718I GGTACC 1 cut(s) 379
AspLEI GCGC 1 cut(s) 548
AsuC2I CCSGG 2 cut(s) 1479, 1567
AsuHPI GGTGA 3 cut(s) 66, 262, 811
AvaI CYCGRG 1 cut(s) 320
BamHI GGATCC 1 cut(s) 450
BanI GGYRCC 2 cut(s) 379, 545
BbsI GAAGAC 1 cut(s) 687
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 136
BceAI ACGGC 6 cut(s) 146, 154, 220, 251, 797, 1299
BciT130I CCWGG 2 cut(s) 739, 1347
BclI TGATCA 2 cut(s) 610, 1201
BcnI CCSGG 2 cut(s) 1479, 1567
BcoDI GTCTC 4 cut(s) 238, 934, 958, 1599
BfaI CTAG 3 cut(s) 470, 788, 1047
BfoI RGCGCY 1 cut(s) 549
BisI GCNGC 5 cut(s) 264, 304, 565, 703, 712
BlsI GCNGC 5 cut(s) 265, 305, 566, 704, 713
Bme1390I CCNGG 4 cut(s) 739, 1347, 1479, 1567
BmeT110I CYCGRG 1 cut(s) 320
BmgBI CACGTC 1 cut(s) 685
BmiI GGNNCC 6 cut(s) 381, 452, 547, 762, 811, 1407
BmrFI CCNGG 4 cut(s) 739, 1347, 1479, 1567
BmsI GCATC 3 cut(s) 101, 1221, 1267
BpiI GAAGAC 1 cut(s) 687
BpmI CTGGAG 1 cut(s) 1368
Bpu10I CCTNAGC 2 cut(s) 996, 1506
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 2 cut(s) 1479, 1567
Bsa29I ATCGAT 1 cut(s) 420
BsaHI GRCGYC 3 cut(s) 207, 546, 639
BsaI GGTCTC 1 cut(s) 1599
BsaJI CCNNGG 3 cut(s) 136, 1244, 1478
BsaXI ACNNNNNCTCC 4 cut(s) 669, 699, 1494, 1524
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 1250
Bse1I ACTGG 1 cut(s) 1130
Bse3DI GCAATG 2 cut(s) 489, 1241
BseAI TCCGGA 2 cut(s) 458, 763
BseBI CCWGG 2 cut(s) 739, 1347
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 136, 1244, 1478
BseGI GGATG 2 cut(s) 128, 1236
BseLI CCNNNNNNNGG 2 cut(s) 542, 1250
BseMI GCAATG 2 cut(s) 489, 1241
BseMII CTCAG 4 cut(s) 951, 987, 1254, 1610
BseNI ACTGG 1 cut(s) 1130
BseXI GCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 702
Bsh1285I CGRYCG 1 cut(s) 1576
BshFI GGCC 1 cut(s) 345
BshNI GGYRCC 2 cut(s) 379, 545
BshVI ATCGAT 1 cut(s) 420
BsiEI CGRYCG 1 cut(s) 1576
BsiHKCI CYCGRG 1 cut(s) 320
BslFI GGGAC 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 542, 1250
BsmAI GTCTC 4 cut(s) 238, 934, 958, 1599
BsmFI GGGAC 1 cut(s) 129
BsnI GGCC 1 cut(s) 345
Bso31I GGTCTC 1 cut(s) 1599
BsoBI CYCGRG 1 cut(s) 320
Bsp13I TCCGGA 2 cut(s) 458, 763
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 5 cut(s) 165, 450, 610, 1038, 1201
Bsp19I CCATGG 1 cut(s) 1244
BspANI GGCC 1 cut(s) 345
BspCNI CTCAG 4 cut(s) 952, 988, 1255, 1609
BspDI ATCGAT 1 cut(s) 420
BspEI TCCGGA 2 cut(s) 458, 763
BspFNI CGCG 1 cut(s) 702
BspHI TCATGA 3 cut(s) 585, 1314, 1329
BspLI GGNNCC 6 cut(s) 381, 452, 547, 762, 811, 1407
BspPI GGATC 4 cut(s) 160, 445, 458, 1046
BspT107I GGYRCC 2 cut(s) 379, 545
BspTNI GGTCTC 1 cut(s) 1599
BsrDI GCAATG 2 cut(s) 489, 1241
BsrGI TGTACA 1 cut(s) 402
BsrI ACTGG 1 cut(s) 1130
BssECI CCNNGG 3 cut(s) 136, 1244, 1478
BssMI GATC 5 cut(s) 165, 450, 610, 1038, 1201
BssNI GRCGYC 3 cut(s) 207, 546, 639
BssT1I CCWWGG 1 cut(s) 1244
Bst2UI CCWGG 2 cut(s) 739, 1347
Bst4CI ACNGT 8 cut(s) 81, 445, 599, 647, 659, 665, 778, 799
Bst6I CTCTTC 1 cut(s) 1356
BstACI GRCGYC 3 cut(s) 207, 546, 639
BstAUI TGTACA 1 cut(s) 402
BstDEI CTNAG 8 cut(s) 326, 394, 960, 996, 1263, 1506, 1596, 1620
BstDSI CCRYGG 2 cut(s) 136, 1244
BstEII GGTNACC 1 cut(s) 578
BstF5I GGATG 2 cut(s) 128, 1236
BstFNI CGCG 1 cut(s) 702
BstH2I RGCGCY 1 cut(s) 549
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 5 cut(s) 168, 453, 613, 1041, 1204
BstMAI GTCTC 4 cut(s) 238, 934, 958, 1599
BstMBI GATC 5 cut(s) 165, 450, 610, 1038, 1201
BstMCI CGRYCG 1 cut(s) 1576
BstMWI GCNNNNNNNGC 6 cut(s) 521, 708, 711, 717, 1268, 1277
BstNI CCWGG 2 cut(s) 739, 1347
BstNSI RCATGY 1 cut(s) 403
BstPI GGTNACC 1 cut(s) 578
BstSCI CCNGG 4 cut(s) 737, 1345, 1477, 1565
BstUI CGCG 1 cut(s) 702
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 1 cut(s) 450
BstYI RGATCY 1 cut(s) 450
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 1 cut(s) 345
BsuTUI ATCGAT 1 cut(s) 420
BtgI CCRYGG 2 cut(s) 136, 1244
BtrI CACGTC 1 cut(s) 685
BtsCI GGATG 2 cut(s) 128, 1236
CciI TCATGA 3 cut(s) 585, 1314, 1329
CfoI GCGC 1 cut(s) 548
ClaI ATCGAT 1 cut(s) 420
CseI GACGC 4 cut(s) 196, 632, 647, 1260
Csp6I GTAC 4 cut(s) 380, 403, 655, 1134
CviAII CATG 7 cut(s) 400, 430, 586, 634, 1245, 1315, 1330
CviQI GTAC 4 cut(s) 380, 403, 655, 1134
DdeI CTNAG 8 cut(s) 326, 394, 960, 996, 1263, 1506, 1596, 1620
DinI GGCGCC 1 cut(s) 547
DpnI GATC 5 cut(s) 167, 452, 612, 1040, 1203
DpnII GATC 5 cut(s) 165, 450, 610, 1038, 1201
DraI TTTAAA 3 cut(s) 784, 972, 1393
Eam1104I CTCTTC 1 cut(s) 1356
EarI CTCTTC 1 cut(s) 1356
EciI GGCGGA 3 cut(s) 582, 720, 729
Eco130I CCWWGG 1 cut(s) 1244
Eco31I GGTCTC 1 cut(s) 1599
Eco32I GATATC 2 cut(s) 424, 1462
Eco57I CTGAAG 1 cut(s) 1122
Eco88I CYCGRG 1 cut(s) 320
Eco91I GGTNACC 1 cut(s) 578
EcoO65I GGTNACC 1 cut(s) 578
EcoRII CCWGG 2 cut(s) 737, 1345
EcoRV GATATC 2 cut(s) 424, 1462
EcoT14I CCWWGG 1 cut(s) 1244
EgeI GGCGCC 1 cut(s) 547
EheI GGCGCC 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 1244
FaeI CATG 7 cut(s) 403, 433, 589, 637, 1248, 1318, 1333
FaqI GGGAC 1 cut(s) 129
FatI CATG 7 cut(s) 399, 429, 585, 633, 1244, 1314, 1329
FauI CCCGC 1 cut(s) 529
FbaI TGATCA 2 cut(s) 610, 1201
Fnu4HI GCNGC 5 cut(s) 264, 304, 565, 703, 712
FokI GGATG 2 cut(s) 115, 1243
Fsp4HI GCNGC 5 cut(s) 264, 304, 565, 703, 712
FspBI CTAG 3 cut(s) 470, 788, 1047
GlaI GCGC 1 cut(s) 547
GluI GCNGC 5 cut(s) 264, 304, 565, 703, 712
GsuI CTGGAG 1 cut(s) 1368
HaeII RGCGCY 1 cut(s) 549
HaeIII GGCC 1 cut(s) 345
HgaI GACGC 4 cut(s) 196, 632, 647, 1260
HhaI GCGC 1 cut(s) 548
Hin1I GRCGYC 3 cut(s) 207, 546, 639
Hin1II CATG 7 cut(s) 403, 433, 589, 637, 1248, 1318, 1333
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 1434
HinfI GANTC 7 cut(s) 330, 573, 726, 1043, 1240, 1423, 1606
HphI GGTGA 3 cut(s) 66, 262, 811
Hpy166II GTNNAC 4 cut(s) 67, 511, 655, 956
Hpy188I TCNGA 9 cut(s) 110, 133, 212, 335, 941, 1141, 1276, 1428, 1466
Hpy188III TCNNGA 9 cut(s) 15, 153, 459, 586, 764, 1030, 1070, 1315, 1330
Hpy8I GTNNAC 4 cut(s) 67, 511, 655, 956
Hpy99I CGWCG 5 cut(s) 263, 626, 1224, 1285, 1495
HpyAV CCTTC 4 cut(s) 350, 800, 943, 1493
HpyCH4III ACNGT 8 cut(s) 81, 445, 599, 647, 659, 665, 778, 799
HpyCH4IV ACGT 4 cut(s) 26, 684, 1132, 1493
HpyCH4V TGCA 6 cut(s) 306, 494, 1178, 1234, 1294, 1382
HpyF10VI GCNNNNNNNGC 6 cut(s) 521, 708, 711, 717, 1268, 1277
HpyF3I CTNAG 8 cut(s) 326, 394, 960, 996, 1263, 1506, 1596, 1620
HpySE526I ACGT 4 cut(s) 26, 684, 1132, 1493
Hsp92I GRCGYC 3 cut(s) 207, 546, 639
Hsp92II CATG 7 cut(s) 403, 433, 589, 637, 1248, 1318, 1333
HspAI GCGC 1 cut(s) 546
KasI GGCGCC 1 cut(s) 545
Kpn2I TCCGGA 2 cut(s) 458, 763
KpnI GGTACC 1 cut(s) 383
Ksp22I TGATCA 2 cut(s) 610, 1201
Kzo9I GATC 5 cut(s) 165, 450, 610, 1038, 1201
LmnI GCTCC 6 cut(s) 97, 461, 809, 850, 1411, 1502
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 3 cut(s) 101, 1221, 1267
MaeI CTAG 3 cut(s) 470, 788, 1047
MaeII ACGT 4 cut(s) 26, 684, 1132, 1493
MaeIII GTNAC 6 cut(s) 12, 268, 578, 659, 772, 1089
MalI GATC 5 cut(s) 167, 452, 612, 1040, 1203
MboI GATC 5 cut(s) 165, 450, 610, 1038, 1201
MboII GAAGA 4 cut(s) 692, 754, 1028, 1373
MflI RGATCY 1 cut(s) 450
MluCI AATT 8 cut(s) 36, 54, 1063, 1333, 1444, 1467, 1537, 1582
Mly113I GGCGCC 1 cut(s) 546
MlyI GAGTC 1 cut(s) 735
MmeI TCCRAC 1 cut(s) 156
MroI TCCGGA 2 cut(s) 458, 763
MslI CAYNNNNRTG 2 cut(s) 941, 1299
MspA1I CMGCKG 1 cut(s) 564
MspR9I CCNGG 4 cut(s) 739, 1347, 1479, 1567
MvaI CCWGG 2 cut(s) 739, 1347
MvnI CGCG 1 cut(s) 702
MwoI GCNNNNNNNGC 6 cut(s) 521, 708, 711, 717, 1268, 1277
NarI GGCGCC 1 cut(s) 546
NciI CCSGG 2 cut(s) 1479, 1567
NcoI CCATGG 1 cut(s) 1244
NdeII GATC 5 cut(s) 165, 450, 610, 1038, 1201
NlaIII CATG 7 cut(s) 403, 433, 589, 637, 1248, 1318, 1333
NlaIV GGNNCC 6 cut(s) 381, 452, 547, 762, 811, 1407
NmuCI GTSAC 3 cut(s) 12, 268, 772
NspI RCATGY 1 cut(s) 403
PaeR7I CTCGAG 1 cut(s) 320
PagI TCATGA 3 cut(s) 585, 1314, 1329
PciI ACATGT 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 6 cut(s) 330, 573, 1043, 1240, 1423, 1606
PkrI GCNGC 5 cut(s) 265, 305, 566, 704, 713
PleI GAGTC 1 cut(s) 734
PluTI GGCGCC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 734
PscI ACATGT 1 cut(s) 399
PsiI TTATAA 1 cut(s) 35
Psp1406I AACGTT 1 cut(s) 26
Psp6I CCWGG 2 cut(s) 737, 1345
PspEI GGTNACC 1 cut(s) 578
PspGI CCWGG 2 cut(s) 737, 1345
PspN4I GGNNCC 6 cut(s) 381, 452, 547, 762, 811, 1407
PspXI VCTCGAGB 1 cut(s) 320
PsuI RGATCY 1 cut(s) 450
RsaI GTAC 4 cut(s) 381, 404, 656, 1135
RsaNI GTAC 4 cut(s) 380, 403, 655, 1134
RseI CAYNNNNRTG 2 cut(s) 941, 1299
SatI GCNGC 5 cut(s) 264, 304, 565, 703, 712
Sau3AI GATC 5 cut(s) 165, 450, 610, 1038, 1201
SchI GAGTC 1 cut(s) 735
ScrFI CCNGG 4 cut(s) 739, 1347, 1479, 1567
SfaNI GCATC 3 cut(s) 101, 1221, 1267
SfoI GGCGCC 1 cut(s) 547
Sfr274I CTCGAG 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 320
SmiMI CAYNNNNRTG 2 cut(s) 941, 1299
SmlI CTYRAG 2 cut(s) 151, 320
SmoI CTYRAG 2 cut(s) 151, 320
Sse9I AATT 8 cut(s) 36, 54, 1063, 1333, 1444, 1467, 1537, 1582
SspDI GGCGCC 1 cut(s) 545
SspMI CTAG 3 cut(s) 470, 788, 1047
StyD4I CCNGG 4 cut(s) 737, 1345, 1477, 1565
StyI CCWWGG 1 cut(s) 1244
TaaI ACNGT 8 cut(s) 81, 445, 599, 647, 659, 665, 778, 799
TaiI ACGT 4 cut(s) 29, 687, 1135, 1496
TaqI TCGA 8 cut(s) 117, 321, 420, 621, 855, 1041, 1458, 1572
TasI AATT 8 cut(s) 36, 54, 1063, 1333, 1444, 1467, 1537, 1582
TatI WGTACW 1 cut(s) 402
TauI GCSGC 4 cut(s) 266, 567, 705, 714
TfiI GAWTC 6 cut(s) 330, 573, 1043, 1240, 1423, 1606
TseFI GTSAC 3 cut(s) 12, 268, 772
TseI GCWGC 1 cut(s) 303
Tsp45I GTSAC 3 cut(s) 12, 268, 772
TspDTI ATGAA 9 cut(s) 17, 215, 446, 815, 925, 1303, 1318, 1346, 1512
TspGWI ACGGA 2 cut(s) 738, 1398
XceI RCATGY 1 cut(s) 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 1224
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 3 cut(s) 470, 788, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.