Rroxscaffold_1G00059720

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013793
Physical Location & Seq
Forward (+)
81791492 .. 81792283
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059720.1

Sequence Viewer

Length: 690 bp
ATGAAGCCTTTAGTACTCGCAATGCTCTCAATGTATTCAATCTTTGGAGTGATATCACCAGTTTCATGCGCTACAAGTTCATCCTTAGTTGAAACCACTTTCCTCCAATGCCTTTCAAACCATTCTCAGTCCTCTAATCCAATATCTGGAGTCGTTTACACCTCCAATAATGCCAATTTCTCATCCGTCCTGAATTCTTATGTGAGAAATCTCAGATTTTCGACTCCCACAACCCCGAAACCGCTGCTAATTGTGGCTGCGAAGAACTATTCCCATGTTCAAGGCAGTGTTGTTTGTGCCAAAAGTGTAGGCTTGGAGATCAGAATAAGAAGTGGTGGTCATGACTATGAGGGACTATCATATGTCTCCAACAAGCCCTTTATTGTTCTTGACATGTTTAATCTCCGGTCCATCAATATTGATCTGGCTGATGAGAGTGCTTGGGTACAATCTGGTGCAACTCTTGGAGAAATTTACTATGCGATTTCTGCAAAGAGCAAAGTCCATGGATTCCCTGCTGGTGTATGCCTTACTCTTGGTGCTGGTGGACACTTCACAGGAGGTGGGTATGGTAACATGATGAGAAAATATGGTCTCTCTGTGGACAACATTGTTGATGCACAAATTGTGAATGTGAATGGTGAGATCCTCGACAGGAAATCAATGGGAGAAGACCTCTTTGGGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009505 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0030312 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

229

Amino Acids

24.49

Weight (kDa)

7.68

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 81 - 217 3.2e-22 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013793)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30710 AT1G30720 AT1G30730 AT1G34575 AT2G34810
fragaria_vesca FvH4_3g11041
malus_domestica MD05G1267400.v1.1 MD05G1268700.v1.1
prunus_persica Prupe.4G098800_v2.0.a1
pyrus_communis pycom05g25040
rosa_chinensis RchiOBHm_Chr5g0017761
rosa_laevigata RLG00000032313
rosa_multiflora Rmu_sc0009555.1_g000004
rosa_roxburghii Rroxscaffold_1G00059720 Rroxscaffold_1G00059730
rosa_rugosa Rorug05G0038500
rosa_wichuraiana Rw5G011420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 146
AciI CCGC 1 cut(s) 242
AclWI GGATC 1 cut(s) 640
AcsI RAATTY 2 cut(s) 193, 471
AfaI GTAC 2 cut(s) 15, 447
AfiI CCNNNNNNNGG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 4 cut(s) 39, 92, 117, 281
AjuI GAANNNNNNNTTGG 1 cut(s) 663
Alw26I GTCTC 2 cut(s) 370, 599
AlwI GGATC 1 cut(s) 640
AoxI GGCC 1 cut(s) 683
ApeKI GCWGC 2 cut(s) 244, 257
ApoI RAATTY 2 cut(s) 193, 471
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 408, 683
AsuHPI GGTGA 2 cut(s) 48, 653
AvaII GGWCC 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 2 cut(s) 231, 244
BccI CCATC 1 cut(s) 419
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BcoDI GTCTC 2 cut(s) 370, 599
BisI GCNGC 2 cut(s) 245, 258
BlsI GCNGC 2 cut(s) 246, 259
BmcAI AGTACT 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 2 cut(s) 408, 683
BmsI GCATC 1 cut(s) 607
BpiI GAAGAC 1 cut(s) 678
BplI GAGNNNNNCTC 1 cut(s) 660
BpmI CTGGAG 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 1 cut(s) 505
BsaWI WCCGGW 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 505
BseGI GGATG 2 cut(s) 80, 182
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 140, 226
BseNI ACTGG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 231, 244
BshFI GGCC 1 cut(s) 685
BsiSI CCGG 1 cut(s) 406
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 370, 599
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 1 cut(s) 685
Bso31I GGTCTC 1 cut(s) 599
Bsp143I GATC 3 cut(s) 318, 421, 645
Bsp19I CCATGG 1 cut(s) 505
BspACI CCGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 685
BspCNI CTCAG 2 cut(s) 139, 225
BspHI TCATGA 1 cut(s) 340
BspPI GGATC 1 cut(s) 640
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 505
BssMI GATC 3 cut(s) 318, 421, 645
BssT1I CCWWGG 1 cut(s) 505
BstDEI CTNAG 3 cut(s) 85, 126, 212
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 2 cut(s) 80, 182
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 3 cut(s) 321, 424, 648
BstMAI GTCTC 2 cut(s) 370, 599
BstMBI GATC 3 cut(s) 318, 421, 645
BstMWI GCNNNNNNNGC 1 cut(s) 488
BstNSI RCATGY 1 cut(s) 397
BstV1I GCAGC 2 cut(s) 231, 244
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BsuRI GGCC 1 cut(s) 685
BtgI CCRYGG 1 cut(s) 505
BtsCI GGATG 2 cut(s) 80, 182
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 292
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 408, 683
Csp6I GTAC 2 cut(s) 14, 446
CviAII CATG 6 cut(s) 66, 275, 341, 394, 506, 577
CviJI RGCY 6 cut(s) 7, 257, 312, 376, 428, 685
CviKI_1 RGCY 6 cut(s) 7, 257, 312, 376, 428, 685
CviQI GTAC 2 cut(s) 14, 446
DdeI CTNAG 3 cut(s) 85, 126, 212
DpnI GATC 3 cut(s) 320, 423, 647
DpnII GATC 3 cut(s) 318, 421, 645
Eco130I CCWWGG 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 599
Eco32I GATATC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 408
EcoRI GAATTC 1 cut(s) 193
EcoRV GATATC 1 cut(s) 54
EcoT14I CCWWGG 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 505
FaeI CATG 6 cut(s) 69, 278, 344, 397, 509, 580
FaqI GGGAC 1 cut(s) 366
FatI CATG 6 cut(s) 65, 274, 340, 393, 505, 576
FauNDI CATATG 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 245, 258
FokI GGATG 2 cut(s) 67, 169
Fsp4HI GCNGC 2 cut(s) 245, 258
GlaI GCGC 1 cut(s) 70
GluI GCNGC 2 cut(s) 245, 258
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 685
HapII CCGG 1 cut(s) 406
HhaI GCGC 1 cut(s) 71
Hin1II CATG 6 cut(s) 69, 278, 344, 397, 509, 580
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 3 cut(s) 150, 223, 510
HpaII CCGG 1 cut(s) 406
HphI GGTGA 2 cut(s) 48, 653
Hpy166II GTNNAC 3 cut(s) 157, 548, 604
Hpy188I TCNGA 2 cut(s) 215, 323
Hpy188III TCNNGA 4 cut(s) 147, 190, 341, 389
Hpy8I GTNNAC 3 cut(s) 157, 548, 604
HpyCH4V TGCA 3 cut(s) 458, 491, 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 488
HpyF3I CTNAG 3 cut(s) 85, 126, 212
Hsp92II CATG 6 cut(s) 69, 278, 344, 397, 509, 580
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 3 cut(s) 318, 421, 645
Lsp1109I GCAGC 2 cut(s) 231, 244
LweI GCATC 1 cut(s) 607
MaeIII GTNAC 1 cut(s) 572
MalI GATC 3 cut(s) 320, 423, 647
MboI GATC 3 cut(s) 318, 421, 645
MboII GAAGA 2 cut(s) 274, 683
MflI RGATCY 1 cut(s) 645
MluCI AATT 5 cut(s) 175, 193, 249, 471, 624
MlyI GAGTC 2 cut(s) 159, 217
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 7 cut(s) 113, 142, 172, 343, 554, 659, 686
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 345
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 1 cut(s) 406
MwoI GCNNNNNNNGC 1 cut(s) 488
NcoI CCATGG 1 cut(s) 505
NdeI CATATG 1 cut(s) 361
NdeII GATC 3 cut(s) 318, 421, 645
NlaIII CATG 6 cut(s) 69, 278, 344, 397, 509, 580
NspI RCATGY 1 cut(s) 397
PagI TCATGA 1 cut(s) 340
PciI ACATGT 1 cut(s) 393
PfeI GAWTC 1 cut(s) 510
PflMI CCANNNNNTGG 1 cut(s) 146
PkrI GCNGC 2 cut(s) 246, 259
PleI GAGTC 2 cut(s) 158, 217
PpsI GAGTC 2 cut(s) 158, 217
PscI ACATGT 1 cut(s) 393
PspPI GGNCC 2 cut(s) 408, 683
PsuI RGATCY 1 cut(s) 645
RsaI GTAC 2 cut(s) 15, 447
RsaNI GTAC 2 cut(s) 14, 446
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 2 cut(s) 245, 258
Sau3AI GATC 3 cut(s) 318, 421, 645
Sau96I GGNCC 2 cut(s) 408, 683
ScaI AGTACT 1 cut(s) 15
SchI GAGTC 2 cut(s) 159, 217
SetI ASST 3 cut(s) 164, 565, 678
SfaNI GCATC 1 cut(s) 607
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 5 cut(s) 175, 193, 249, 471, 624
SsiI CCGC 1 cut(s) 242
SspI AATATT 1 cut(s) 418
StyI CCWWGG 1 cut(s) 505
TaqI TCGA 2 cut(s) 221, 651
TasI AATT 5 cut(s) 175, 193, 249, 471, 624
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 1 cut(s) 510
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 292
TseI GCWGC 2 cut(s) 244, 257
TspDTI ATGAA 3 cut(s) 17, 54, 69
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 292
Van91I CCANNNNNTGG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 408
XapI RAATTY 2 cut(s) 193, 471
XceI RCATGY 1 cut(s) 397
ZrmI AGTACT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.