AT1G34575

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
12657027 .. 12658756
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G34575.1

Sequence Viewer

Length: 1584 bp
ATGAAATCTTCAACAACTCAAACCCTAATCTTCACAGTTTTTCTCCTTCTAATTCCAACATCATTCGCAGCACCACCAAAACTCAAAGACAGTTTCACACAATGTGTAACCGTTTTCAAACCTTCCGTCCCAATCCAAAACTTCACATACACGCAACAAAACCCTAACTTCCTCACCATTCTCAACAACTACGTCCGCAATCTCCGTTACTTCAACGGTACTACACGTAAACCGGTAGCGATCGTAGCCGCGGCTCACTTCACTCATATCCAAGCTACAATCAACTGCGCCAAAAAACTTGGCCTCCAGCTCCGTATCCGTAGTGGAGGACATGACTACGATGGAATGTCTTATTTATCAACCGTTGATTTCGTCGTCCTCGACATGTTTAATCTACGTGCAATTGAGATCGATCCAAAACTAGATACCGCGTGGGTACAATCCGGTGCAACCCTAGGAGAGATCTACTACAACGTTGCCAATAAAAGCAACAACCTCCGTGGTTTCCCCGCTGGAATCTGTCCCGGTCTCGGTGCTGGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTTATCGATTGATAACATTATAGACGCTAAGATTGTTGATGCTAACGCAAGAGTCTTGGACCGGAGTTCCATGGGAGAAGATCTTTTCTGGGCCTTACGAGGCGGTGGAGCCGCTAGCTTCTGTGTTGTCTTAGCTTGGAAGATCAAGCTAGTTCCTGTCCCGGAGAAAGTTACAGTCTTTAACGTTGAAACAATCGGAAACAGAGGAGTAATCCCTACCGATCTTGCAGCGAAATGGCAAGAGATCGCCGACAAGATCGATAACGATTTGTTCATAAGATTAACGTTGAGCTCAAGTAACAAGACGGTCAAGGCTTCTTTCATGGGAATGTACTTAGGAAACTCCGAGAAGCTTCTAGAGATTATGAACGCCAAATTCCCGGAACTCGGTCTGAACAAAACAGAGTGCATAGAAATGAAATGGATCGAATCAGTTCTGTTCTGGCTTAGTATCCCACCGGGTACAGCACCAACATCGGTCATGCTAAACCGAATCCCACAAAAGCAAATCTACCTTAAAAGAAAATCCGATTACGTGCAGAAACCGATCTCAAAACCCGGTCTAGAATCGATATTCAAGATTCTTTCAGAGAACGAGAACGTGTCGATGGCTTGGAACCCATACGGCGGGAGAATGAGCGAGATTCCGGCGACAGAGACGGCGTTTCCTCACCGAGCAGGGAACATGTTTAAGATTCAGTACTCATCTAACTGGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGCCAAACGGAAAGAGTGTTCGAGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCGTTTTTGAACTACAGAGATATTGACATTGGGAAGAACTTGAACTCAACGTACGAGGAAGGTAAAGTGTATGGAGTTAAGTATTTTAAGAATAACTTCGAGAGGTTGGTTCAGGTTAAGACTAGAGTTGATCCGGACAACATTTTCCGGTACGAGCAGAGCATTCCAGTGCACGTTAGCCGTTAG
Functional Annotation

Protein Analysis

527

Amino Acids

59.05

Weight (kDa)

9.13

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 79 - 215 2e-21 FAD binding domain
BBE PF08031 467 - 522 2.8e-19 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013793)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 251, 431
AccIII TCCGGA 1 cut(s) 1531
AclI AACGTT 3 cut(s) 474, 771, 872
AclWI GGATC 3 cut(s) 407, 1019, 1523
AcsI RAATTY 1 cut(s) 962
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 7 cut(s) 220, 438, 920, 1051, 1289, 1451, 1550
AfiI CCNNNNNNNGG 3 cut(s) 530, 974, 1214
AflIII ACRYGT 5 cut(s) 224, 384, 1188, 1272, 1377
AgeI ACCGGT 1 cut(s) 232
AgsI TTSAA 7 cut(s) 12, 118, 214, 776, 1165, 1408, 1441
AjnI CCWGG 1 cut(s) 1309
AloI GAACNNNNNNTCC 2 cut(s) 1340, 1372
AluBI AGCT 7 cut(s) 275, 310, 705, 722, 736, 879, 940
AluI AGCT 7 cut(s) 275, 310, 705, 722, 736, 879, 940
Alw21I GWGCWC 2 cut(s) 881, 1572
Alw26I GTCTC 2 cut(s) 533, 1238
Alw44I GTGCAC 1 cut(s) 1568
AlwI GGATC 3 cut(s) 407, 1019, 1523
Aor13HI TCCGGA 1 cut(s) 1531
AoxI GGCC 2 cut(s) 301, 678
ApaLI GTGCAC 1 cut(s) 1568
ApeKI GCWGC 2 cut(s) 68, 815
ApoI RAATTY 1 cut(s) 962
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AsiGI ACCGGT 1 cut(s) 232
Asp700I GAANNNNTTC 2 cut(s) 1020, 1493
AspA2I CCTAGG 1 cut(s) 454
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 646, 678
AsuC2I CCSGG 5 cut(s) 525, 749, 968, 1047, 1146
AsuHPI GGTGA 3 cut(s) 166, 1250, 1325
AsuNHI GCTAGC 2 cut(s) 701, 1325
AvaII GGWCC 1 cut(s) 646
AvrII CCTAGG 1 cut(s) 454
BaeGI GKGCMC 1 cut(s) 1572
BanII GRGCYC 2 cut(s) 881, 1373
Bbv12I GWGCWC 2 cut(s) 881, 1572
BbvI GCAGC 2 cut(s) 80, 827
BccI CCATC 2 cut(s) 335, 1189
BceAI ACGGC 3 cut(s) 1228, 1263, 1563
BcgI CGANNNNNNTGC 2 cut(s) 1044, 1078
BciT130I CCWGG 1 cut(s) 1311
BciVI GTATCC 2 cut(s) 326, 1049
BcnI CCSGG 5 cut(s) 525, 749, 968, 1047, 1146
BcoDI GTCTC 2 cut(s) 533, 1238
BfaI CTAG 8 cut(s) 422, 455, 702, 737, 944, 1151, 1326, 1521
BfmI CTRYAG 1 cut(s) 1411
BfuI GTATCC 2 cut(s) 326, 1049
BglII AGATCT 2 cut(s) 462, 667
BisI GCNGC 6 cut(s) 69, 249, 252, 699, 816, 1323
BlnI CCTAGG 1 cut(s) 454
BlsI GCNGC 6 cut(s) 70, 250, 253, 700, 817, 1324
BmcAI AGTACT 1 cut(s) 1289
Bme1390I CCNGG 6 cut(s) 525, 749, 968, 1047, 1146, 1311
Bme18I GGWCC 1 cut(s) 646
BmgT120I GGNCC 2 cut(s) 646, 678
BmiI GGNNCC 2 cut(s) 697, 1205
BmrFI CCNGG 6 cut(s) 525, 749, 968, 1047, 1146, 1311
BmsI GCATC 1 cut(s) 616
BmtI GCTAGC 2 cut(s) 705, 1329
BpmI CTGGAG 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 865, 1357
BpuMI CCSGG 5 cut(s) 525, 749, 968, 1047, 1146
Bsa29I ATCGAT 4 cut(s) 411, 593, 846, 1157
BsaAI YACGTR 4 cut(s) 227, 398, 1123, 1378
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 4 cut(s) 249, 454, 499, 657
BsaWI WCCGGW 5 cut(s) 232, 443, 648, 1531, 1545
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 3 cut(s) 530, 974, 1214
Bse118I RCCGGY 1 cut(s) 232
Bse1I ACTGG 2 cut(s) 1304, 1565
Bse3DI GCAATG 1 cut(s) 1371
BseAI TCCGGA 1 cut(s) 1531
BseBI CCWGG 1 cut(s) 1311
BseCI ATCGAT 4 cut(s) 411, 593, 846, 1157
BseDI CCNNGG 4 cut(s) 249, 454, 499, 657
BseLI CCNNNNNNNGG 3 cut(s) 530, 974, 1214
BseMI GCAATG 1 cut(s) 1371
BseNI ACTGG 2 cut(s) 1304, 1565
BseRI GAGGAG 1 cut(s) 807
BseSI GKGCMC 1 cut(s) 1572
BseXI GCAGC 2 cut(s) 80, 827
BsgI GTGCAG 1 cut(s) 1145
Bsh1236I CGCG 2 cut(s) 251, 431
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 2 cut(s) 303, 680
BshTI ACCGGT 1 cut(s) 232
BshVI ATCGAT 4 cut(s) 411, 593, 846, 1157
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 2 cut(s) 881, 1572
BsiWI CGTACG 1 cut(s) 1449
BslFI GGGAC 3 cut(s) 113, 507, 731
BslI CCNNNNNNNGG 3 cut(s) 530, 974, 1214
BsmAI GTCTC 2 cut(s) 533, 1238
BsmBI CGTCTC 1 cut(s) 1238
BsmFI GGGAC 3 cut(s) 113, 507, 731
BsmI GAATGC 1 cut(s) 1560
BsnI GGCC 2 cut(s) 303, 680
Bso31I GGTCTC 1 cut(s) 533
Bsp1286I GDGCHC 3 cut(s) 881, 1373, 1572
Bsp13I TCCGGA 1 cut(s) 1531
Bsp19I CCATGG 1 cut(s) 657
BspANI GGCC 2 cut(s) 303, 680
BspDI ATCGAT 4 cut(s) 411, 593, 846, 1157
BspEI TCCGGA 1 cut(s) 1531
BspFNI CGCG 2 cut(s) 251, 431
BspLI GGNNCC 2 cut(s) 697, 1205
BspOI GCTAGC 2 cut(s) 705, 1329
BspPI GGATC 3 cut(s) 407, 1019, 1523
BspTNI GGTCTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 1371
BsrFI RCCGGY 1 cut(s) 232
BsrI ACTGG 2 cut(s) 1304, 1565
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 4 cut(s) 249, 454, 499, 657
BssT1I CCWWGG 2 cut(s) 454, 657
Bst2UI CCWGG 1 cut(s) 1311
Bst4CI ACNGT 8 cut(s) 37, 92, 112, 218, 364, 587, 763, 895
BstBAI YACGTR 4 cut(s) 227, 398, 1123, 1378
BstC8I GCNNGC 2 cut(s) 703, 1327
BstDEI CTNAG 5 cut(s) 615, 718, 922, 1034, 1383
BstDSI CCRYGG 3 cut(s) 249, 499, 657
BstFNI CGCG 2 cut(s) 251, 431
BstHHI GCGC 1 cut(s) 290
BstMAI GTCTC 2 cut(s) 533, 1238
BstMCI CGRYCG 1 cut(s) 243
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 1311
BstNSI RCATGY 2 cut(s) 388, 1276
BstSCI CCNGG 6 cut(s) 523, 747, 966, 1045, 1144, 1309
BstSFI CTRYAG 1 cut(s) 1411
BstSLI GKGCMC 1 cut(s) 1572
BstUI CGCG 2 cut(s) 251, 431
BstV1I GCAGC 2 cut(s) 80, 827
BstX2I RGATCY 2 cut(s) 462, 667
BstYI RGATCY 2 cut(s) 462, 667
Bsu15I ATCGAT 4 cut(s) 411, 593, 846, 1157
BsuI GTATCC 2 cut(s) 326, 1049
BsuRI GGCC 2 cut(s) 303, 680
BsuTUI ATCGAT 4 cut(s) 411, 593, 846, 1157
BtgI CCRYGG 3 cut(s) 249, 499, 657
BtsIMutI CAGTG 1 cut(s) 1572
Cac8I GCNNGC 2 cut(s) 703, 1327
CfoI GCGC 1 cut(s) 290
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 2 cut(s) 646, 678
Cfr42I CCGCGG 1 cut(s) 252
ClaI ATCGAT 4 cut(s) 411, 593, 846, 1157
CseI GACGC 1 cut(s) 620
Csp6I GTAC 7 cut(s) 219, 437, 919, 1050, 1288, 1450, 1549
CspAI ACCGGT 1 cut(s) 232
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 7 cut(s) 332, 385, 571, 658, 910, 1069, 1273
CviQI GTAC 7 cut(s) 219, 437, 919, 1050, 1288, 1450, 1549
DdeI CTNAG 5 cut(s) 615, 718, 922, 1034, 1383
DraIII CACNNNGTG 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 879
Eco130I CCWWGG 2 cut(s) 454, 657
Eco24I GRGCYC 2 cut(s) 881, 1373
Eco31I GGTCTC 1 cut(s) 533
Eco47I GGWCC 1 cut(s) 646
Eco53kI GAGCTC 1 cut(s) 879
EcoICRI GAGCTC 1 cut(s) 879
EcoRII CCWGG 1 cut(s) 1309
EcoT14I CCWWGG 2 cut(s) 454, 657
EcoT38I GRGCYC 2 cut(s) 881, 1373
ErhI CCWWGG 2 cut(s) 454, 657
Esp3I CGTCTC 1 cut(s) 1238
FaeI CATG 7 cut(s) 335, 388, 574, 661, 913, 1072, 1276
FalI AAGNNNNNCTT 2 cut(s) 1478, 1510
FaqI GGGAC 3 cut(s) 113, 507, 731
FatI CATG 7 cut(s) 331, 384, 570, 657, 909, 1068, 1272
FauI CCCGC 2 cut(s) 517, 1208
Fnu4HI GCNGC 6 cut(s) 69, 249, 252, 699, 816, 1323
FriOI GRGCYC 2 cut(s) 881, 1373
Fsp4HI GCNGC 6 cut(s) 69, 249, 252, 699, 816, 1323
FspBI CTAG 8 cut(s) 422, 455, 702, 737, 944, 1151, 1326, 1521
GlaI GCGC 1 cut(s) 289
GluI GCNGC 6 cut(s) 69, 249, 252, 699, 816, 1323
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 2 cut(s) 303, 680
HgaI GACGC 1 cut(s) 620
HhaI GCGC 1 cut(s) 290
Hin1II CATG 7 cut(s) 335, 388, 574, 661, 913, 1072, 1276
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 9 cut(s) 516, 639, 1016, 1080, 1154, 1168, 1231, 1282, 1387
HphI GGTGA 3 cut(s) 166, 1250, 1325
Hpy166II GTNNAC 2 cut(s) 230, 1570
Hpy188I TCNGA 5 cut(s) 785, 934, 981, 1117, 1177
Hpy188III TCNNGA 5 cut(s) 944, 1151, 1165, 1498, 1532
Hpy8I GTNNAC 2 cut(s) 230, 1570
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 56, 132, 1451
HpyCH4III ACNGT 8 cut(s) 37, 92, 112, 218, 364, 587, 763, 895
HpyCH4V TGCA 6 cut(s) 401, 449, 815, 996, 1126, 1570
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 5 cut(s) 615, 718, 922, 1034, 1383
Hsp92II CATG 7 cut(s) 335, 388, 574, 661, 913, 1072, 1276
HspAI GCGC 1 cut(s) 288
Kpn2I TCCGGA 1 cut(s) 1531
KspI CCGCGG 1 cut(s) 252
LmnI GCTCC 2 cut(s) 315, 695
Lsp1109I GCAGC 2 cut(s) 80, 827
LweI GCATC 1 cut(s) 616
MaeI CTAG 8 cut(s) 422, 455, 702, 737, 944, 1151, 1326, 1521
MaeIII GTNAC 5 cut(s) 106, 206, 560, 757, 884
MboII GAAGA 5 cut(s) 22, 677, 739, 1328, 1444
MfeI CAATTG 1 cut(s) 402
MflI RGATCY 2 cut(s) 462, 667
MhlI GDGCHC 3 cut(s) 881, 1373, 1572
MluCI AATT 3 cut(s) 51, 402, 962
MlyI GAGTC 1 cut(s) 648
MmeI TCCRAC 1 cut(s) 80
MroI TCCGGA 1 cut(s) 1531
MroXI GAANNNNTTC 2 cut(s) 1020, 1493
MseI TTAA 8 cut(s) 390, 768, 869, 1104, 1278, 1476, 1485, 1515
MslI CAYNNNNRTG 3 cut(s) 914, 1001, 1565
MspA1I CMGCKG 2 cut(s) 251, 512
MspR9I CCNGG 6 cut(s) 525, 749, 968, 1047, 1146, 1311
MunI CAATTG 1 cut(s) 402
Mva1269I GAATGC 1 cut(s) 1560
MvaI CCWGG 1 cut(s) 1311
MvnI CGCG 2 cut(s) 251, 431
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 5 cut(s) 525, 749, 968, 1047, 1146
NcoI CCATGG 1 cut(s) 657
NheI GCTAGC 2 cut(s) 701, 1325
NlaIII CATG 7 cut(s) 335, 388, 574, 661, 913, 1072, 1276
NlaIV GGNNCC 2 cut(s) 697, 1205
NspI RCATGY 2 cut(s) 388, 1276
PciI ACATGT 2 cut(s) 384, 1272
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PctI GAATGC 1 cut(s) 1560
PdmI GAANNNNTTC 2 cut(s) 1020, 1493
PfeI GAWTC 8 cut(s) 516, 1016, 1080, 1154, 1168, 1231, 1282, 1387
Pfl23II CGTACG 1 cut(s) 1449
PfoI TCCNGGA 2 cut(s) 747, 966
PinAI ACCGGT 1 cut(s) 232
PkrI GCNGC 6 cut(s) 70, 250, 253, 700, 817, 1324
Ple19I CGATCG 1 cut(s) 243
PleI GAGTC 1 cut(s) 647
PpsI GAGTC 1 cut(s) 647
Ppu21I YACGTR 4 cut(s) 227, 398, 1123, 1378
PscI ACATGT 2 cut(s) 384, 1272
Psp124BI GAGCTC 1 cut(s) 881
Psp1406I AACGTT 3 cut(s) 474, 771, 872
Psp6I CCWGG 1 cut(s) 1309
PspGI CCWGG 1 cut(s) 1309
PspLI CGTACG 1 cut(s) 1449
PspN4I GGNNCC 2 cut(s) 697, 1205
PspPI GGNCC 2 cut(s) 646, 678
PsrI GAACNNNNNNTAC 2 cut(s) 1433, 1465
PsuI RGATCY 2 cut(s) 462, 667
PvuI CGATCG 1 cut(s) 243
RsaI GTAC 7 cut(s) 220, 438, 920, 1051, 1289, 1451, 1550
RsaNI GTAC 7 cut(s) 219, 437, 919, 1050, 1288, 1450, 1549
RseI CAYNNNNRTG 3 cut(s) 914, 1001, 1565
SacI GAGCTC 1 cut(s) 881
SacII CCGCGG 1 cut(s) 252
SaqAI TTAA 8 cut(s) 390, 768, 869, 1104, 1278, 1476, 1485, 1515
SatI GCNGC 6 cut(s) 69, 249, 252, 699, 816, 1323
Sau96I GGNCC 2 cut(s) 646, 678
ScaI AGTACT 1 cut(s) 1289
SchI GAGTC 1 cut(s) 648
ScrFI CCNGG 6 cut(s) 525, 749, 968, 1047, 1146, 1311
SduI GDGCHC 3 cut(s) 881, 1373, 1572
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 1 cut(s) 1411
Sfr303I CCGCGG 1 cut(s) 252
SgrBI CCGCGG 1 cut(s) 252
SinI GGWCC 1 cut(s) 646
SmiMI CAYNNNNRTG 3 cut(s) 914, 1001, 1565
SmlI CTYRAG 2 cut(s) 880, 1336
SmoI CTYRAG 2 cut(s) 880, 1336
Sse9I AATT 3 cut(s) 51, 402, 962
SspMI CTAG 8 cut(s) 422, 455, 702, 737, 944, 1151, 1326, 1521
SstI GAGCTC 1 cut(s) 881
StyD4I CCNGG 6 cut(s) 523, 747, 966, 1045, 1144, 1309
StyI CCWWGG 2 cut(s) 454, 657
TaaI ACNGT 8 cut(s) 37, 92, 112, 218, 364, 587, 763, 895
TaqI TCGA 9 cut(s) 381, 411, 593, 846, 1014, 1157, 1193, 1359, 1497
TaqII GACCGA 2 cut(s) 965, 1054
TasI AATT 3 cut(s) 51, 402, 962
TatI WGTACW 2 cut(s) 918, 1287
TauI GCSGC 4 cut(s) 251, 254, 701, 1325
TfiI GAWTC 8 cut(s) 516, 1016, 1080, 1154, 1168, 1231, 1282, 1387
Tru1I TTAA 8 cut(s) 390, 768, 869, 1104, 1278, 1476, 1485, 1515
Tru9I TTAA 8 cut(s) 390, 768, 869, 1104, 1278, 1476, 1485, 1515
TscAI CASTG 1 cut(s) 1572
TseI GCWGC 2 cut(s) 68, 815
TspDTI ATGAA 5 cut(s) 17, 850, 898, 968, 1019
TspGWI ACGGA 7 cut(s) 115, 194, 302, 308, 488, 579, 1361
TspRI CASTG 1 cut(s) 1572
VneI GTGCAC 1 cut(s) 1568
VpaK11BI GGWCC 1 cut(s) 646
XapI RAATTY 1 cut(s) 962
XbaI TCTAGA 2 cut(s) 943, 1150
XceI RCATGY 2 cut(s) 388, 1276
XmaJI CCTAGG 1 cut(s) 454
XmnI GAANNNNTTC 2 cut(s) 1020, 1493
XspI CTAG 8 cut(s) 422, 455, 702, 737, 944, 1151, 1326, 1521
ZrmI AGTACT 1 cut(s) 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.