Prupe.4G098800_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013793
Physical Location & Seq
Reverse (-)
5025878 .. 5027407
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G098800.1

Sequence Viewer

Length: 1530 bp
TCATGTACCAATTCATCGTCAGTTGAATTCAATTTTCTCCAATGCCTTTCCAAACATTCTCAGCGATCAAATCCAATCTCTGAAGCAATTTACACCTCCAAAAGTGCCTCTTTTTCCTCTGTTCTGCAGTCATATGTGAGAAATCTCAGATTTATATCCCCGACAACCCCGAAACCGCTGCTAATTGTAGCAGCCAAGCATGAATCCCATGTTCCAGCAACTGTCATATGTGCCAAAAGCCTTGGCTTGGAAATCAGGATAAGAAGCGGTGGACATGACTATGAGGGTGTTTCCTATGTGTCCCGAAATACAAAAGATTTCATCGTTCTCGACATGTTTAATCTCCGGTCCATCAATATTGATATGGCGGATGAAAGTGCATGGGTCCAATCTGGGGCAATACTTGGTGAAATTTTCTATGCAATTTCTATGAAAAGCAAAAACCATGCCTTCCCTGCTGGTGTGTGTCCTAGTATTGGTGCTGGTGGACATTTCACAGGAGGTGGTTATGGTAACATGATGAGAAAATATGGACTTTCAACTGATAACATTGTGGATGCAAAAATAGTAAATGTAAATGGTAAAATCCTTGATAGAAAGGCCATGGGTGAAGATCTATTTTGGGCCATTAGAGGAGGTGGTGGATCAAGTTTTGGAGTCATTCTTGCCTGGAAAATCAAGTTCGTTCGGGTTCCTGCCACGGTGACTGTGTTCGAAGTAAAAAGGACATTGGCACTAGGTGCAACAGAAATTCTTGTGAAATGGCAACAAGTTGCTGATAAGCTAGATCACGATTTGTTCATAAGAGCAATTATTAAGCCAGCGAATGGAACGATCGAGGTGTCTTTCATGTCCTTGTTTCTCGGAAACTCTGAAAGACTTCTGAAGCTGATGAGTCAAAGCTTTCCTCAATTGGGTTTGCAGAAAACAGATTGCCATGAAATGAGTTGGATTCAATCAGTTTTATATTGGACAAACTACCAGAATGGAACTACTTCCCCTGAGGTTTTGCTCAACAGGGTCCCCAAAGGGCAAGTGTTTCTGAAGCGAAAATCTGATTACGTGAAACAACCAATTTCAAAGACAGATTTGGAGGCCTTATGGAAGGTGATGATTGAGATTGGAGAAGTTACGATGCTGTGGAATCCTTATGGAGGAAAAATGAGTGAGATTCCAGAGACAGCTACTCCATTTCCACATAGAGCAGGTAACTTATTCAAGATTCAGTATTCAGTTAACTGGAAGGAGGAAGGGTTTGAGTCCACCAAAAGGTACTTGAGTTTGATGAAAAAACTTTATGTAGCAATGACTCCTTATGTGTCCAAGAATCCCAGGATGGCTTTCTACAACTATCGTGACCTTGACATTGGTACGAATTCGAAAGGCGGGTACGATGAAGCAAAAGTGTATGGGACTAAGTACTTCAAGGGTAATTTTGAAAGATTAGTACGTATTAAAACAGAGGTGGATCCTGAGAATTTTTTCAGAAATGAACAGAGCATTCCAACTCTTCCGTCTAAACAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009505 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0030312 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

510

Amino Acids

57.14

Weight (kDa)

9.38

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013793)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30710 AT1G30720 AT1G30730 AT1G34575 AT2G34810
fragaria_vesca FvH4_3g11041
malus_domestica MD05G1267400.v1.1 MD05G1268700.v1.1
prunus_persica Prupe.4G098800_v2.0.a1
pyrus_communis pycom05g25040
rosa_chinensis RchiOBHm_Chr5g0017761
rosa_laevigata RLG00000032313
rosa_multiflora Rmu_sc0009555.1_g000004
rosa_roxburghii Rroxscaffold_1G00059720 Rroxscaffold_1G00059730
rosa_rugosa Rorug05G0038500
rosa_wichuraiana Rw5G011420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1196
AccB7I CCANNNNNTGG 1 cut(s) 827
AciI CCGC 4 cut(s) 176, 267, 368, 1386
AclWI GGATC 3 cut(s) 652, 1463, 1476
AcsI RAATTY 5 cut(s) 26, 411, 750, 1375, 1477
AcuI CTGAAG 3 cut(s) 102, 905, 1064
AdeI CACNNNGTG 1 cut(s) 740
AfaI GTAC 6 cut(s) 7, 1274, 1372, 1391, 1421, 1449
AfiI CCNNNNNNNGG 7 cut(s) 247, 394, 476, 827, 914, 1154, 1269
AflIII ACRYGT 1 cut(s) 333
AgsI TTSAA 8 cut(s) 26, 31, 540, 956, 1080, 1219, 1426, 1439
AjnI CCWGG 2 cut(s) 668, 1331
AluBI AGCT 4 cut(s) 784, 889, 903, 1184
AluI AGCT 4 cut(s) 784, 889, 903, 1184
Alw26I GTCTC 1 cut(s) 1172
AlwI GGATC 3 cut(s) 652, 1463, 1476
AlwNI CAGNNNCTG 1 cut(s) 221
AoxI GGCC 3 cut(s) 600, 624, 1095
ApeKI GCWGC 2 cut(s) 178, 191
ApoI RAATTY 5 cut(s) 26, 411, 750, 1375, 1477
Asp700I GAANNNNTTC 3 cut(s) 879, 994, 1481
AspS9I GGNCC 4 cut(s) 348, 385, 624, 1021
AsuHPI GGTGA 4 cut(s) 419, 620, 715, 1120
AsuII TTCGAA 2 cut(s) 714, 1379
AvaII GGWCC 3 cut(s) 348, 385, 1021
AxyI CCTNAGG 1 cut(s) 1002
BaeI ACNNNNGTAYC 2 cut(s) 1264, 1297
BamHI GGATCC 1 cut(s) 1468
BbvI GCAGC 2 cut(s) 165, 203
BccI CCATC 2 cut(s) 359, 1330
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BciT130I CCWGG 2 cut(s) 670, 1333
BcoDI GTCTC 1 cut(s) 1172
BfaI CTAG 3 cut(s) 471, 737, 785
BfmI CTRYAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 1196
BglII AGATCT 1 cut(s) 613
BisI GCNGC 2 cut(s) 179, 192
BlsI GCNGC 2 cut(s) 180, 193
BmcAI AGTACT 1 cut(s) 1421
Bme1390I CCNGG 2 cut(s) 670, 1333
Bme18I GGWCC 3 cut(s) 348, 385, 1021
BmgT120I GGNCC 4 cut(s) 348, 385, 624, 1021
BmiI GGNNCC 5 cut(s) 386, 693, 1022, 1023, 1470
BmrFI CCNGG 2 cut(s) 670, 1333
BmsI GCATC 2 cut(s) 547, 1125
Bpu14I TTCGAA 2 cut(s) 714, 1379
BpuEI CTTGAG 1 cut(s) 1297
BsaAI YACGTR 2 cut(s) 1063, 1451
BsaBI GATNNNNATC 1 cut(s) 154
BsaJI CCNNGG 4 cut(s) 241, 603, 699, 1331
BsaWI WCCGGW 1 cut(s) 345
BsaXI ACNNNNNCTCC 4 cut(s) 1171, 1201, 1238, 1268
Bsc4I CCNNNNNNNGG 7 cut(s) 247, 394, 476, 827, 914, 1154, 1269
Bse1I ACTGG 1 cut(s) 1244
Bse21I CCTNAGG 1 cut(s) 1002
Bse3DI GCAATG 1 cut(s) 1311
Bse8I GATNNNNATC 1 cut(s) 154
BseBI CCWGG 2 cut(s) 670, 1333
BseDI CCNNGG 4 cut(s) 241, 603, 699, 1331
BseGI GGATG 3 cut(s) 376, 562, 1341
BseJI GATNNNNATC 1 cut(s) 154
BseLI CCNNNNNNNGG 7 cut(s) 247, 394, 476, 827, 914, 1154, 1269
BseMI GCAATG 1 cut(s) 1311
BseMII CTCAG 4 cut(s) 74, 160, 993, 1464
BseNI ACTGG 1 cut(s) 1244
BseRI GAGGAG 1 cut(s) 648
BseXI GCAGC 2 cut(s) 165, 203
Bsh1285I CGRYCG 1 cut(s) 837
BshFI GGCC 3 cut(s) 602, 626, 1097
BsiEI CGRYCG 1 cut(s) 837
BsiSI CCGG 1 cut(s) 346
BslFI GGGAC 3 cut(s) 286, 1007, 1426
BslI CCNNNNNNNGG 7 cut(s) 247, 394, 476, 827, 914, 1154, 1269
BsmAI GTCTC 1 cut(s) 1172
BsmFI GGGAC 3 cut(s) 286, 1007, 1426
BsmI GAATGC 1 cut(s) 1500
BsnI GGCC 3 cut(s) 602, 626, 1097
Bsp119I TTCGAA 2 cut(s) 714, 1379
Bsp143I GATC 6 cut(s) 65, 613, 644, 787, 834, 1468
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 4 cut(s) 176, 267, 368, 1386
BspANI GGCC 3 cut(s) 602, 626, 1097
BspCNI CTCAG 4 cut(s) 73, 159, 994, 1465
BspLI GGNNCC 5 cut(s) 386, 693, 1022, 1023, 1470
BspMAI CTGCAG 1 cut(s) 129
BspMI ACCTGC 1 cut(s) 1196
BspPI GGATC 3 cut(s) 652, 1463, 1476
BspT104I TTCGAA 2 cut(s) 714, 1379
BsrDI GCAATG 1 cut(s) 1311
BsrI ACTGG 1 cut(s) 1244
BssECI CCNNGG 4 cut(s) 241, 603, 699, 1331
BssMI GATC 6 cut(s) 65, 613, 644, 787, 834, 1468
BssT1I CCWWGG 2 cut(s) 241, 603
Bst2UI CCWGG 2 cut(s) 670, 1333
Bst4CI ACNGT 3 cut(s) 223, 703, 709
Bst6I CTCTTC 1 cut(s) 1515
BstAPI GCANNNNNTGC 1 cut(s) 740
BstBAI YACGTR 2 cut(s) 1063, 1451
BstBI TTCGAA 2 cut(s) 714, 1379
BstC8I GCNNGC 1 cut(s) 822
BstDEI CTNAG 5 cut(s) 60, 146, 1002, 1416, 1473
BstDSI CCRYGG 2 cut(s) 603, 699
BstENI CCTNNNNNAGG 1 cut(s) 1152
BstF5I GGATG 3 cut(s) 376, 562, 1341
BstKTI GATC 6 cut(s) 68, 616, 647, 790, 837, 1471
BstMAI GTCTC 1 cut(s) 1172
BstMBI GATC 6 cut(s) 65, 613, 644, 787, 834, 1468
BstMCI CGRYCG 1 cut(s) 837
BstMWI GCNNNNNNNGC 2 cut(s) 455, 740
BstNI CCWGG 2 cut(s) 670, 1333
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 2 cut(s) 668, 1331
BstSFI CTRYAG 1 cut(s) 125
BstSNI TACGTA 1 cut(s) 1451
BstV1I GCAGC 2 cut(s) 165, 203
BstX2I RGATCY 2 cut(s) 613, 1468
BstYI RGATCY 2 cut(s) 613, 1468
Bsu36I CCTNAGG 1 cut(s) 1002
BsuRI GGCC 3 cut(s) 602, 626, 1097
BtgI CCRYGG 2 cut(s) 603, 699
BtsCI GGATG 3 cut(s) 376, 562, 1341
BveI ACCTGC 1 cut(s) 1196
Cac8I GCNNGC 1 cut(s) 822
CaiI CAGNNNCTG 1 cut(s) 221
Cfr13I GGNCC 4 cut(s) 348, 385, 624, 1021
Csp6I GTAC 6 cut(s) 6, 1273, 1371, 1390, 1420, 1448
CviQI GTAC 6 cut(s) 6, 1273, 1371, 1390, 1420, 1448
DdeI CTNAG 5 cut(s) 60, 146, 1002, 1416, 1473
DpnI GATC 6 cut(s) 67, 615, 646, 789, 836, 1470
DpnII GATC 6 cut(s) 65, 613, 644, 787, 834, 1468
DraIII CACNNNGTG 1 cut(s) 740
Eam1104I CTCTTC 1 cut(s) 1515
EarI CTCTTC 1 cut(s) 1515
EciI GGCGGA 1 cut(s) 383
Eco105I TACGTA 1 cut(s) 1451
Eco130I CCWWGG 2 cut(s) 241, 603
Eco147I AGGCCT 1 cut(s) 1097
Eco47I GGWCC 3 cut(s) 348, 385, 1021
Eco57I CTGAAG 3 cut(s) 102, 905, 1064
Eco81I CCTNAGG 1 cut(s) 1002
EcoNI CCTNNNNNAGG 1 cut(s) 1152
EcoO109I RGGNCCY 1 cut(s) 1021
EcoRI GAATTC 2 cut(s) 26, 1375
EcoRII CCWGG 2 cut(s) 668, 1331
EcoT14I CCWWGG 2 cut(s) 241, 603
ErhI CCWWGG 2 cut(s) 241, 603
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FaqI GGGAC 3 cut(s) 286, 1007, 1426
FauI CCCGC 1 cut(s) 1379
FauNDI CATATG 2 cut(s) 133, 227
Fnu4HI GCNGC 2 cut(s) 179, 192
FokI GGATG 3 cut(s) 383, 569, 1348
Fsp4HI GCNGC 2 cut(s) 179, 192
FspBI CTAG 3 cut(s) 471, 737, 785
GluI GCNGC 2 cut(s) 179, 192
HaeIII GGCC 3 cut(s) 602, 626, 1097
HapII CCGG 1 cut(s) 346
HincII GTYRAC 1 cut(s) 1237
HindII GTYRAC 1 cut(s) 1237
HindIII AAGCTT 1 cut(s) 901
HpaI GTTAAC 1 cut(s) 1237
HpaII CCGG 1 cut(s) 346
HphI GGTGA 4 cut(s) 419, 620, 715, 1120
Hpy166II GTNNAC 4 cut(s) 272, 488, 1237, 1263
Hpy188I TCNGA 8 cut(s) 82, 149, 866, 874, 885, 1044, 1057, 1487
Hpy188III TCNNGA 8 cut(s) 256, 303, 329, 791, 1175, 1219, 1355, 1472
Hpy8I GTNNAC 4 cut(s) 272, 488, 1237, 1263
HpyAV CCTTC 4 cut(s) 460, 1099, 1237, 1244
HpyCH4III ACNGT 3 cut(s) 223, 703, 709
HpyCH4IV ACGT 2 cut(s) 1062, 1450
HpyCH4V TGCA 6 cut(s) 127, 380, 422, 560, 743, 922
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 740
HpyF3I CTNAG 5 cut(s) 60, 146, 1002, 1416, 1473
HpySE526I ACGT 2 cut(s) 1062, 1450
KflI GGGWCCC 1 cut(s) 1021
KspAI GTTAAC 1 cut(s) 1237
Kzo9I GATC 6 cut(s) 65, 613, 644, 787, 834, 1468
Lsp1109I GCAGC 2 cut(s) 165, 203
LweI GCATC 2 cut(s) 547, 1125
MaeI CTAG 3 cut(s) 471, 737, 785
MaeII ACGT 2 cut(s) 1062, 1450
MaeIII GTNAC 5 cut(s) 512, 703, 1129, 1208, 1355
MalI GATC 6 cut(s) 67, 615, 646, 789, 836, 1470
MboI GATC 6 cut(s) 65, 613, 644, 787, 834, 1468
MboII GAAGA 2 cut(s) 623, 1502
MfeI CAATTG 1 cut(s) 911
MflI RGATCY 2 cut(s) 613, 1468
MlyI GAGTC 4 cut(s) 666, 904, 1268, 1303
MmeI TCCRAC 2 cut(s) 929, 1529
MroXI GAANNNNTTC 3 cut(s) 879, 994, 1481
MseI TTAA 4 cut(s) 339, 816, 1236, 1455
MslI CAYNNNNRTG 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 178
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 2 cut(s) 670, 1333
MunI CAATTG 1 cut(s) 911
Mva1269I GAATGC 1 cut(s) 1500
MvaI CCWGG 2 cut(s) 670, 1333
MwoI GCNNNNNNNGC 2 cut(s) 455, 740
NcoI CCATGG 1 cut(s) 603
NdeI CATATG 2 cut(s) 133, 227
NdeII GATC 6 cut(s) 65, 613, 644, 787, 834, 1468
NlaIV GGNNCC 5 cut(s) 386, 693, 1022, 1023, 1470
NmuCI GTSAC 2 cut(s) 703, 1355
NspI RCATGY 1 cut(s) 337
NspV TTCGAA 2 cut(s) 714, 1379
PceI AGGCCT 1 cut(s) 1097
PciI ACATGT 1 cut(s) 333
PctI GAATGC 1 cut(s) 1500
PdmI GAANNNNTTC 3 cut(s) 879, 994, 1481
PfeI GAWTC 6 cut(s) 203, 952, 1144, 1171, 1222, 1327
PflMI CCANNNNNTGG 1 cut(s) 827
PkrI GCNGC 2 cut(s) 180, 193
Ple19I CGATCG 1 cut(s) 837
PleI GAGTC 4 cut(s) 665, 903, 1267, 1303
PpsI GAGTC 4 cut(s) 665, 903, 1267, 1303
Ppu21I YACGTR 2 cut(s) 1063, 1451
PpuMI RGGWCCY 1 cut(s) 1021
PscI ACATGT 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 1021
Psp6I CCWGG 2 cut(s) 668, 1331
PspGI CCWGG 2 cut(s) 668, 1331
PspN4I GGNNCC 5 cut(s) 386, 693, 1022, 1023, 1470
PspPI GGNCC 4 cut(s) 348, 385, 624, 1021
PspPPI RGGWCCY 1 cut(s) 1021
PstI CTGCAG 1 cut(s) 129
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 2 cut(s) 613, 1468
PvuI CGATCG 1 cut(s) 837
RsaI GTAC 6 cut(s) 7, 1274, 1372, 1391, 1421, 1449
RsaNI GTAC 6 cut(s) 6, 1273, 1371, 1390, 1420, 1448
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 4 cut(s) 339, 816, 1236, 1455
SatI GCNGC 2 cut(s) 179, 192
Sau3AI GATC 6 cut(s) 65, 613, 644, 787, 834, 1468
Sau96I GGNCC 4 cut(s) 348, 385, 624, 1021
ScaI AGTACT 1 cut(s) 1421
SchI GAGTC 4 cut(s) 666, 904, 1268, 1303
ScrFI CCNGG 2 cut(s) 670, 1333
SfaNI GCATC 2 cut(s) 547, 1125
SfcI CTRYAG 1 cut(s) 125
SfuI TTCGAA 2 cut(s) 714, 1379
SinI GGWCC 3 cut(s) 348, 385, 1021
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 1276
SmoI CTYRAG 1 cut(s) 1276
SnaBI TACGTA 1 cut(s) 1451
SseBI AGGCCT 1 cut(s) 1097
SsiI CCGC 4 cut(s) 176, 267, 368, 1386
SspI AATATT 1 cut(s) 358
SspMI CTAG 3 cut(s) 471, 737, 785
StuI AGGCCT 1 cut(s) 1097
StyD4I CCNGG 2 cut(s) 668, 1331
StyI CCWWGG 2 cut(s) 241, 603
TaaI ACNGT 3 cut(s) 223, 703, 709
TaiI ACGT 2 cut(s) 1065, 1453
TaqI TCGA 4 cut(s) 330, 714, 837, 1379
TatI WGTACW 1 cut(s) 1419
TfiI GAWTC 6 cut(s) 203, 952, 1144, 1171, 1222, 1327
Tru1I TTAA 4 cut(s) 339, 816, 1236, 1455
Tru9I TTAA 4 cut(s) 339, 816, 1236, 1455
TseFI GTSAC 2 cut(s) 703, 1355
TseI GCWGC 2 cut(s) 178, 191
Tsp45I GTSAC 2 cut(s) 703, 1355
TspGWI ACGGA 1 cut(s) 1503
Van91I CCANNNNNTGG 1 cut(s) 827
VpaK11BI GGWCC 3 cut(s) 348, 385, 1021
XagI CCTNNNNNAGG 1 cut(s) 1152
XapI RAATTY 5 cut(s) 26, 411, 750, 1375, 1477
XceI RCATGY 1 cut(s) 337
XmnI GAANNNNTTC 3 cut(s) 879, 994, 1481
XspI CTAG 3 cut(s) 471, 737, 785
ZrmI AGTACT 1 cut(s) 1421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.