Rmu_sc0009555.1_g000004

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009555.1
OG0013793
Physical Location & Seq
Forward (+)
17612 .. 19186
1575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009555.1_g000004.1.cds

Sequence Viewer

Length: 1575 bp
atgtattcaatccttggagtgatatcaccagtttcatgcgctacaagttcatccttagttgaaaccacttttctccaatgcctttcaaaccattctcagtcctctaatccaatatctggagtcgtttacacctccaacaatgccaatttctcatccgtcctgaattcttatgtgagaaatctcagattttcgactcccacaaccccgaaaccgctgctaattgtggcggcgaagaactattcccatgttcaagccactgttgtttgtgccaaaagtgtaggcttggagatcagaataagaagtggtggtcatgactatgagggcctatcatatgtctccaacaagccctttattgttcttgacatgtttaatctccggtccatcaatattgatctggctgatgagagtgcttgggtacaatctggtgcaactcttggagaaatttactatgcgatttctgcaaagagcaaagtccatggattccctgctggtgtatgccttactcttggtgctggtggacacttcacaggaggtgggtatggtaacatgatgagaaaatatggtctctctgtggacaacattgttgatgcaaaaattatgaatgtgaatggtgagatcctcgacaggaaatcaatgggagaagacctcttttgggccataagaggaggtggtgcagcaagttttggagtcattcttgcttggaagatcaagttggttaaggttcctgagaaggtgacggtgttccaggtcgaaaggacattagaacaaggtgcaacagacattgttgtgcagtggcaaaaagttgctgataatatagaaaatgatctgttcataagagtgatgctgttaccagggaatggaagcagagaaggtgaaaagacaatcacggccacttttgtttccttgttcctgggggattctgtaaggcttctgaggctgctgaatcaaagcttgcctcaattgggtttgcagcagaaggattgcatcgaaatgagctgggttgaatcaattctgttttgggctagctaccctattgggacttcccttgatgttttgctcagtagggttccaaagggactaacattcctgaagcggaaatcagattatgtgcaggaaccgatttcaaagacagatttggaagctttgtggaaagtgatgatagaaattggtgacggtggaatgctgtggaatccttatggaggaaaaatgagtgagatttcagccactgaaactccatttccacatagagcaggcaacatattcaagatccaatattcatttaactggaaagatggagagcttgagactaccaacaggtacttaaatttgactagacgacttcatgaggcaatgactcctcatgtgtccaagagtccaagggaggcttttctcaactaccgggatatcgacattggaaccaatacagagggtgaatacaaggaaggagaagtgtatgggattaagtacttcaagcacaattttgaacgattagttcggattaaaacaaaggtagatcctgataatttctttagaaatgaacagagcattccaactcttccgctccaagtattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0008150 GO:0009505 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0030312 GO:0042221 GO:0044464 GO:0050896 GO:0071944 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

524

Amino Acids

58.32

Weight (kDa)

8.09

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013793)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G30710 AT1G30720 AT1G30730 AT1G34575 AT2G34810
fragaria_vesca FvH4_3g11041
malus_domestica MD05G1267400.v1.1 MD05G1268700.v1.1
prunus_persica Prupe.4G098800_v2.0.a1
pyrus_communis pycom05g25040
rosa_chinensis RchiOBHm_Chr5g0017761
rosa_laevigata RLG00000032313
rosa_multiflora Rmu_sc0009555.1_g000004
rosa_roxburghii Rroxscaffold_1G00059720 Rroxscaffold_1G00059730
rosa_rugosa Rorug05G0038500
rosa_wichuraiana Rw5G011420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 116, 857
AccBSI CCGCTC 1 cut(s) 1561
AciI CCGC 4 cut(s) 212, 227, 1093, 1559
AclWI GGATC 3 cut(s) 610, 1261, 1508
AcoI YGGCCR 1 cut(s) 888
AcsI RAATTY 3 cut(s) 163, 441, 1324
AcuI CTGAAG 1 cut(s) 1109
AfaI GTAC 3 cut(s) 417, 1319, 1466
AfiI CCNNNNNNNGG 5 cut(s) 116, 652, 857, 962, 1199
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 9 cut(s) 9, 62, 87, 251, 1004, 1125, 1264, 1471, 1484
AjnI CCWGG 3 cut(s) 744, 850, 909
AjuI GAANNNNNNNTTGG 2 cut(s) 695, 727
AluBI AGCT 5 cut(s) 951, 996, 1026, 1142, 1300
AluI AGCT 5 cut(s) 951, 996, 1026, 1142, 1300
Alw26I GTCTC 3 cut(s) 340, 569, 1298
AlwI GGATC 3 cut(s) 610, 1261, 1508
AlwNI CAGNNNCTG 1 cut(s) 1226
AoxI GGCC 3 cut(s) 322, 654, 888
ApeKI GCWGC 4 cut(s) 214, 674, 937, 970
ApoI RAATTY 3 cut(s) 163, 441, 1324
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 3 cut(s) 322, 378, 654
AsuC2I CCSGG 1 cut(s) 1400
AsuHPI GGTGA 6 cut(s) 18, 623, 745, 884, 1181, 1442
AsuNHI GCTAGC 1 cut(s) 1022
AvaII GGWCC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 648
BbvI GCAGC 4 cut(s) 201, 686, 924, 982
BccI CCATC 2 cut(s) 389, 1286
BceAI ACGGC 1 cut(s) 903
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 3 cut(s) 746, 852, 911
BcnI CCSGG 1 cut(s) 1400
BcoDI GTCTC 3 cut(s) 340, 569, 1298
BfaI CTAG 2 cut(s) 1023, 1332
BisI GCNGC 5 cut(s) 215, 228, 675, 938, 971
BlsI GCNGC 5 cut(s) 216, 229, 676, 939, 972
BmcAI AGTACT 1 cut(s) 1466
Bme1390I CCNGG 4 cut(s) 746, 852, 911, 1400
Bme18I GGWCC 1 cut(s) 378
BmgT120I GGNCC 3 cut(s) 322, 378, 654
BmiI GGNNCC 4 cut(s) 723, 1068, 1116, 1417
BmrFI CCNGG 4 cut(s) 746, 852, 911, 1400
BmsI GCATC 3 cut(s) 577, 831, 993
BmtI GCTAGC 1 cut(s) 1026
BpiI GAAGAC 1 cut(s) 648
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 1322
BpuMI CCSGG 1 cut(s) 1400
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 5 cut(s) 13, 475, 851, 910, 1376
BsaWI WCCGGW 1 cut(s) 375
BsaXI ACNNNNNCTCC 2 cut(s) 1216, 1246
Bsc4I CCNNNNNNNGG 5 cut(s) 116, 652, 857, 962, 1199
Bse1I ACTGG 2 cut(s) 29, 1289
Bse3DI GCAATG 1 cut(s) 1356
BseBI CCWGG 3 cut(s) 746, 852, 911
BseDI CCNNGG 5 cut(s) 13, 475, 851, 910, 1376
BseGI GGATG 2 cut(s) 50, 152
BseLI CCNNNNNNNGG 5 cut(s) 116, 652, 857, 962, 1199
BseMI GCAATG 1 cut(s) 1356
BseMII CTCAG 5 cut(s) 110, 196, 717, 923, 1072
BseNI ACTGG 2 cut(s) 29, 1289
BseRI GAGGAG 2 cut(s) 678, 1347
BseXI GCAGC 4 cut(s) 201, 686, 924, 982
BseYI CCCAGC 1 cut(s) 996
BsgI GTGCAG 3 cut(s) 693, 809, 1130
BshFI GGCC 3 cut(s) 324, 656, 890
BsiSI CCGG 2 cut(s) 376, 1399
BslFI GGGAC 2 cut(s) 1051, 1089
BslI CCNNNNNNNGG 5 cut(s) 116, 652, 857, 962, 1199
BsmAI GTCTC 3 cut(s) 340, 569, 1298
BsmFI GGGAC 2 cut(s) 1051, 1089
BsmI GAATGC 2 cut(s) 1185, 1545
BsnI GGCC 3 cut(s) 324, 656, 890
Bso31I GGTCTC 1 cut(s) 569
Bsp143I GATC 7 cut(s) 288, 391, 615, 705, 823, 1266, 1513
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 4 cut(s) 212, 227, 1093, 1559
BspANI GGCC 3 cut(s) 324, 656, 890
BspCNI CTCAG 5 cut(s) 109, 195, 718, 924, 1071
BspHI TCATGA 2 cut(s) 310, 1342
BspLI GGNNCC 4 cut(s) 723, 1068, 1116, 1417
BspOI GCTAGC 1 cut(s) 1026
BspPI GGATC 3 cut(s) 610, 1261, 1508
BspTNI GGTCTC 1 cut(s) 569
BsrBI CCGCTC 1 cut(s) 1561
BsrDI GCAATG 1 cut(s) 1356
BsrI ACTGG 2 cut(s) 29, 1289
BssECI CCNNGG 5 cut(s) 13, 475, 851, 910, 1376
BssMI GATC 7 cut(s) 288, 391, 615, 705, 823, 1266, 1513
BssT1I CCWWGG 3 cut(s) 13, 475, 1376
Bst2UI CCWGG 3 cut(s) 746, 852, 911
Bst4CI ACNGT 3 cut(s) 259, 739, 1175
Bst6I CTCTTC 1 cut(s) 1560
BstC8I GCNNGC 3 cut(s) 953, 1024, 1252
BstDEI CTNAG 6 cut(s) 55, 96, 182, 726, 932, 1058
BstDSI CCRYGG 1 cut(s) 475
BstENI CCTNNNNNAGG 1 cut(s) 1197
BstF5I GGATG 2 cut(s) 50, 152
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 7 cut(s) 291, 394, 618, 708, 826, 1269, 1516
BstMAI GTCTC 3 cut(s) 340, 569, 1298
BstMBI GATC 7 cut(s) 288, 391, 615, 705, 823, 1266, 1513
BstMWI GCNNNNNNNGC 2 cut(s) 458, 934
BstNI CCWGG 3 cut(s) 746, 852, 911
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 4 cut(s) 744, 850, 909, 1398
BstV1I GCAGC 4 cut(s) 201, 686, 924, 982
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 3 cut(s) 615, 1266, 1513
BstYI RGATCY 3 cut(s) 615, 1266, 1513
BsuRI GGCC 3 cut(s) 324, 656, 890
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 2 cut(s) 50, 152
BtsI GCAGTG 1 cut(s) 797
BtsIMutI CAGTG 3 cut(s) 255, 797, 1224
Cac8I GCNNGC 3 cut(s) 953, 1024, 1252
CaiI CAGNNNCTG 1 cut(s) 1226
CciI TCATGA 2 cut(s) 310, 1342
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 3 cut(s) 322, 378, 654
Csp6I GTAC 3 cut(s) 416, 1318, 1465
CviAII CATG 8 cut(s) 36, 245, 311, 364, 476, 547, 1343, 1361
CviQI GTAC 3 cut(s) 416, 1318, 1465
DdeI CTNAG 6 cut(s) 55, 96, 182, 726, 932, 1058
DpnI GATC 7 cut(s) 290, 393, 617, 707, 825, 1268, 1515
DpnII GATC 7 cut(s) 288, 391, 615, 705, 823, 1266, 1513
EaeI YGGCCR 1 cut(s) 888
Eam1104I CTCTTC 1 cut(s) 1560
EarI CTCTTC 1 cut(s) 1560
Eco130I CCWWGG 3 cut(s) 13, 475, 1376
Eco31I GGTCTC 1 cut(s) 569
Eco32I GATATC 2 cut(s) 24, 1405
Eco47I GGWCC 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 1109
EcoNI CCTNNNNNAGG 1 cut(s) 1197
EcoO109I RGGNCCY 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 163
EcoRII CCWGG 3 cut(s) 744, 850, 909
EcoRV GATATC 2 cut(s) 24, 1405
EcoT14I CCWWGG 3 cut(s) 13, 475, 1376
ErhI CCWWGG 3 cut(s) 13, 475, 1376
FaeI CATG 8 cut(s) 39, 248, 314, 367, 479, 550, 1346, 1364
FalI AAGNNNNNCTT 2 cut(s) 1369, 1401
FaqI GGGAC 2 cut(s) 1051, 1089
FatI CATG 8 cut(s) 35, 244, 310, 363, 475, 546, 1342, 1360
FauNDI CATATG 1 cut(s) 331
Fnu4HI GCNGC 5 cut(s) 215, 228, 675, 938, 971
FokI GGATG 2 cut(s) 37, 139
Fsp4HI GCNGC 5 cut(s) 215, 228, 675, 938, 971
FspBI CTAG 2 cut(s) 1023, 1332
GlaI GCGC 1 cut(s) 40
GluI GCNGC 5 cut(s) 215, 228, 675, 938, 971
GsaI CCCAGC 1 cut(s) 1000
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 3 cut(s) 324, 656, 890
HapII CCGG 2 cut(s) 376, 1399
HhaI GCGC 1 cut(s) 41
Hin1II CATG 8 cut(s) 39, 248, 314, 367, 479, 550, 1346, 1364
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HindIII AAGCTT 2 cut(s) 949, 1140
HpaII CCGG 2 cut(s) 376, 1399
HphI GGTGA 6 cut(s) 18, 623, 745, 884, 1181, 1442
Hpy166II GTNNAC 3 cut(s) 127, 518, 574
Hpy188I TCNGA 5 cut(s) 185, 293, 933, 1102, 1497
Hpy188III TCNNGA 9 cut(s) 117, 160, 311, 359, 725, 1087, 1264, 1343, 1517
Hpy8I GTNNAC 3 cut(s) 127, 518, 574
HpyAV CCTTC 4 cut(s) 724, 863, 970, 1436
HpyCH4III ACNGT 3 cut(s) 259, 739, 1175
HpyCH4V TGCA 9 cut(s) 428, 461, 590, 674, 773, 790, 970, 984, 1111
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 934
HpyF3I CTNAG 6 cut(s) 55, 96, 182, 726, 932, 1058
Hsp92II CATG 8 cut(s) 39, 248, 314, 367, 479, 550, 1346, 1364
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 7 cut(s) 288, 391, 615, 705, 823, 1266, 1513
LmnI GCTCC 1 cut(s) 1566
Lsp1109I GCAGC 4 cut(s) 201, 686, 924, 982
LweI GCATC 3 cut(s) 577, 831, 993
MaeI CTAG 2 cut(s) 1023, 1332
MaeIII GTNAC 4 cut(s) 542, 733, 846, 1169
MalI GATC 7 cut(s) 290, 393, 617, 707, 825, 1268, 1515
MbiI CCGCTC 1 cut(s) 1561
MboI GATC 7 cut(s) 288, 391, 615, 705, 823, 1266, 1513
MboII GAAGA 4 cut(s) 244, 653, 715, 1547
MfeI CAATTG 1 cut(s) 959
MflI RGATCY 3 cut(s) 615, 1266, 1513
MlyI GAGTC 5 cut(s) 129, 187, 696, 1348, 1381
MmeI TCCRAC 3 cut(s) 159, 363, 1574
MroXI GAANNNNTTC 1 cut(s) 1008
MseI TTAA 6 cut(s) 369, 717, 1281, 1322, 1461, 1500
MslI CAYNNNNRTG 4 cut(s) 315, 785, 836, 989
MspA1I CMGCKG 1 cut(s) 214
MspI CCGG 2 cut(s) 376, 1399
MspR9I CCNGG 4 cut(s) 746, 852, 911, 1400
MunI CAATTG 1 cut(s) 959
Mva1269I GAATGC 2 cut(s) 1185, 1545
MvaI CCWGG 3 cut(s) 746, 852, 911
MwoI GCNNNNNNNGC 2 cut(s) 458, 934
NciI CCSGG 1 cut(s) 1400
NcoI CCATGG 1 cut(s) 475
NdeI CATATG 1 cut(s) 331
NdeII GATC 7 cut(s) 288, 391, 615, 705, 823, 1266, 1513
NheI GCTAGC 1 cut(s) 1022
NlaIII CATG 8 cut(s) 39, 248, 314, 367, 479, 550, 1346, 1364
NlaIV GGNNCC 4 cut(s) 723, 1068, 1116, 1417
NmuCI GTSAC 2 cut(s) 733, 1169
NspI RCATGY 1 cut(s) 367
PagI TCATGA 2 cut(s) 310, 1342
PciI ACATGT 1 cut(s) 363
PctI GAATGC 2 cut(s) 1185, 1545
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 5 cut(s) 480, 917, 943, 1004, 1189
PflMI CCANNNNNTGG 2 cut(s) 116, 857
PkrI GCNGC 5 cut(s) 216, 229, 676, 939, 972
PleI GAGTC 5 cut(s) 128, 187, 695, 1348, 1380
PpsI GAGTC 5 cut(s) 128, 187, 695, 1348, 1380
PscI ACATGT 1 cut(s) 363
Psp6I CCWGG 3 cut(s) 744, 850, 909
PspFI CCCAGC 1 cut(s) 996
PspGI CCWGG 3 cut(s) 744, 850, 909
PspN4I GGNNCC 4 cut(s) 723, 1068, 1116, 1417
PspPI GGNCC 3 cut(s) 322, 378, 654
PstNI CAGNNNCTG 1 cut(s) 1226
PsuI RGATCY 3 cut(s) 615, 1266, 1513
RsaI GTAC 3 cut(s) 417, 1319, 1466
RsaNI GTAC 3 cut(s) 416, 1318, 1465
RseI CAYNNNNRTG 4 cut(s) 315, 785, 836, 989
SaqAI TTAA 6 cut(s) 369, 717, 1281, 1322, 1461, 1500
SatI GCNGC 5 cut(s) 215, 228, 675, 938, 971
Sau3AI GATC 7 cut(s) 288, 391, 615, 705, 823, 1266, 1513
Sau96I GGNCC 3 cut(s) 322, 378, 654
ScaI AGTACT 1 cut(s) 1466
SchI GAGTC 5 cut(s) 129, 187, 696, 1348, 1381
ScrFI CCNGG 4 cut(s) 746, 852, 911, 1400
SfaNI GCATC 3 cut(s) 577, 831, 993
SinI GGWCC 1 cut(s) 378
SmiMI CAYNNNNRTG 4 cut(s) 315, 785, 836, 989
SmlI CTYRAG 1 cut(s) 1301
SmoI CTYRAG 1 cut(s) 1301
SsiI CCGC 4 cut(s) 212, 227, 1093, 1559
SspI AATATT 2 cut(s) 388, 1274
SspMI CTAG 2 cut(s) 1023, 1332
StyD4I CCNGG 4 cut(s) 744, 850, 909, 1398
StyI CCWWGG 3 cut(s) 13, 475, 1376
TaaI ACNGT 3 cut(s) 259, 739, 1175
TaqI TCGA 5 cut(s) 191, 621, 750, 987, 1407
TatI WGTACW 1 cut(s) 1464
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 5 cut(s) 480, 917, 943, 1004, 1189
Tru1I TTAA 6 cut(s) 369, 717, 1281, 1322, 1461, 1500
Tru9I TTAA 6 cut(s) 369, 717, 1281, 1322, 1461, 1500
TscAI CASTG 3 cut(s) 262, 797, 1231
TseFI GTSAC 2 cut(s) 733, 1169
TseI GCWGC 4 cut(s) 214, 674, 937, 970
Tsp45I GTSAC 2 cut(s) 733, 1169
TspDTI ATGAA 7 cut(s) 24, 39, 614, 820, 1266, 1331, 1551
TspGWI ACGGA 1 cut(s) 145
TspRI CASTG 3 cut(s) 262, 797, 1231
Van91I CCANNNNNTGG 2 cut(s) 116, 857
VpaK11BI GGWCC 1 cut(s) 378
XagI CCTNNNNNAGG 1 cut(s) 1197
XapI RAATTY 3 cut(s) 163, 441, 1324
XceI RCATGY 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 2 cut(s) 1023, 1332
ZrmI AGTACT 1 cut(s) 1466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.