FvH4_3g11041

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
6508821 .. 6510693
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11041.t1

Sequence Viewer

Length: 1605 bp
ATGAAGCCTTTAGTATTAGCAATGATCTCCGTTTTTTCAATCCTTGGAGTGATATCACCAGTTTCATACGCTACAAATTCATCCTCAGTTGAAACCACTTTTCTCCAATGCCTTTCAAACCATTCTCAGTCCTCTAGTCCAATCTCCGAAGTCGTTTACACCTCCAAAAATGCCAATTTCTCATCCGTCCTGCAATCTTATGTGAGAAACCTCAGATTTTCCACTCCCACAACCCCGAAACCGCTGCTAATCGTGGCGGCCAAGAACTATTCCCATGTTCAAGCCACTGTTGTATGTGCCAAACGTGTAGGCTTAGAAATCAGAATAAGAAGTGGTGGTCATGATTATGAGGGCCTGTCATATGTCTCCAGCAAGCCCTTTATTGTTCTTGACATGTTTAATCTCCGGTCCATCAATATTGATCTGGCTGATGAGAGTGCTTGGGTACAATCTGGGGCAACTCTTGGAGAAATTTACTATGCGATTTCTACAAAGAGCAAAGTCCATGGATTTCCTGCAGGTGTTTGTCTTACGCTTGGTGCTGGTGGACACTTCACAGGAGGTGGGTATGGTAACATGATGAGAAAATATGGACTCTCTGTCGACAACATCGTCGATGTACAAATTGTCAATGTGAACGGTGAGATCCTCGATAGGAAATCAATGGGAGAAGACCTCTTTTGGGCCATAAGAGGGGGTGGTGCAGCAAGTTTTGGAGTCATTCTTGCTTGGAAGATCAAGTTGGTTAAGGTTCCTGAGAAGGTGACGGTGTTCCAGGTCGACAGGACATTAGAACAAGGTGCCACAGACATTGTTGTGCAGTGGCAGAAAGTTGCTGATAATATAGACAATGATCTGTTCATTAGAGTGATGCTAGCACCAGGGAATGGAAGCAGAGAAGGTGAAAAGACAATCAAGGTAACTTTTGTTTCCTTGTTCCTGGGGGATTCTGCAAGGCTTCTGAGGCTGCTGAACCAAAGCCTGCCTCAATTGGGTTTGCAGCAGAAGGATTGCATCGAAATGAGCTGGATAGAATCAATTCTGTTTTGGGCTGGTTACCCTAATGGGACTTCCCTTGATGTTTTGCTCAGTAGGGTTCCAATGGGAATGATATACCTGAAGCGGAAATCAGACTATGTGCAGGAACCGATTTCAAAGACAGATATGGAGGCTTTGTGGAAAGTGATGATAGAAATTGGGGATGGTGGAATGCTGTGGAATCCTTATGGAGGAAAAATGAGTGAGATTCCAGACACTGAAACTCCATTTCCACATAGAGCAGGCAACATATTCAAGATCCAATATTCATTTAACTGGATAGATGGAAGGCTAGAGACCACCAACAGGTACTTAAATTTGACTACAAAACTCCATGAAGCAATGACTCCTCATGTTTCCAAGAATCCAAGGGAGGCTTTTCTGAACTATCGGGATATCGACATAGGAACCAATACAAAGGGTGACTACAAGGAAGCAGAAGTTTATGGGGTTAAGTACTTCAAGCATAATTTTGAAAGGTTAGTGCAGACTAAAACAAAGGTAGATCCTGATAATTTCTTCAGAAATGAACAGAGCATTCCAACTCTTGCGCCCAAAGTATTATGA
Functional Annotation

Protein Analysis

535

Amino Acids

59.48

Weight (kDa)

8.58

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 81 - 217 9.1e-23 FAD binding domain
BBE PF08031 472 - 527 1.6e-19 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013793)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 509
AasI GACNNNNNNGTC 1 cut(s) 611
Acc36I ACCTGC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 800
AccB7I CCANNNNNTGG 1 cut(s) 887
AccI GTMKAC 2 cut(s) 603, 780
AciI CCGC 3 cut(s) 242, 257, 1123
AclWI GGATC 3 cut(s) 640, 1291, 1538
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 3 cut(s) 76, 471, 1354
AcuI CTGAAG 2 cut(s) 1139, 1543
AfaI GTAC 4 cut(s) 447, 621, 1349, 1496
AfiI CCNNNNNNNGG 6 cut(s) 682, 693, 887, 992, 1229, 1344
AflIII ACRYGT 2 cut(s) 304, 393
AgsI TTSAA 8 cut(s) 39, 92, 117, 281, 1155, 1294, 1501, 1514
AhdI GACNNNNNGTC 1 cut(s) 599
AjnI CCWGG 3 cut(s) 774, 880, 939
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AluBI AGCT 1 cut(s) 1026
AluI AGCT 1 cut(s) 1026
Alw26I GTCTC 2 cut(s) 370, 1328
AlwI GGATC 3 cut(s) 640, 1291, 1538
AlwNI CAGNNNCTG 1 cut(s) 1256
AoxI GGCC 3 cut(s) 258, 352, 684
ApeKI GCWGC 4 cut(s) 244, 704, 967, 1000
ApoI RAATTY 3 cut(s) 76, 471, 1354
Asp700I GAANNNNTTC 1 cut(s) 1038
AspLEI GCGC 1 cut(s) 1591
AspS9I GGNCC 3 cut(s) 352, 408, 684
AsuHPI GGTGA 5 cut(s) 48, 653, 775, 914, 1472
AsuNHI GCTAGC 1 cut(s) 874
AvaII GGWCC 1 cut(s) 408
BanI GGYRCC 1 cut(s) 800
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 4 cut(s) 231, 716, 954, 1012
BccI CCATC 3 cut(s) 419, 1196, 1316
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 3 cut(s) 776, 882, 941
BcoDI GTCTC 2 cut(s) 370, 1328
BfaI CTAG 3 cut(s) 135, 875, 1331
BfmI CTRYAG 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 509
BisI GCNGC 5 cut(s) 245, 258, 705, 968, 1001
BlsI GCNGC 5 cut(s) 246, 259, 706, 969, 1002
BmcAI AGTACT 1 cut(s) 1496
Bme1390I CCNGG 3 cut(s) 776, 882, 941
Bme18I GGWCC 1 cut(s) 408
BmeRI GACNNNNNGTC 1 cut(s) 599
BmgT120I GGNCC 3 cut(s) 352, 408, 684
BmiI GGNNCC 5 cut(s) 753, 802, 1098, 1146, 1447
BmrFI CCNGG 3 cut(s) 776, 882, 941
BmsI GCATC 2 cut(s) 861, 1023
BmtI GCTAGC 1 cut(s) 878
BpiI GAAGAC 1 cut(s) 678
BplI GAGNNNNNCTC 2 cut(s) 660, 692
BpmI CTGGAG 1 cut(s) 352
BsaI GGTCTC 1 cut(s) 1328
BsaJI CCNNGG 5 cut(s) 43, 505, 881, 940, 1406
BsaWI WCCGGW 1 cut(s) 405
BsaXI ACNNNNNCTCC 4 cut(s) 1160, 1190, 1246, 1276
Bsc4I CCNNNNNNNGG 6 cut(s) 682, 693, 887, 992, 1229, 1344
Bse1I ACTGG 2 cut(s) 59, 1319
Bse3DI GCAATG 2 cut(s) 27, 1386
BseBI CCWGG 3 cut(s) 776, 882, 941
BseDI CCNNGG 5 cut(s) 43, 505, 881, 940, 1406
BseGI GGATG 3 cut(s) 80, 182, 1207
BseLI CCNNNNNNNGG 6 cut(s) 682, 693, 887, 992, 1229, 1344
BseMI GCAATG 2 cut(s) 27, 1386
BseMII CTCAG 6 cut(s) 99, 140, 226, 747, 953, 1102
BseNI ACTGG 2 cut(s) 59, 1319
BseRI GAGGAG 1 cut(s) 1377
BseXI GCAGC 4 cut(s) 231, 716, 954, 1012
BsgI GTGCAG 4 cut(s) 723, 839, 1160, 1544
BshFI GGCC 3 cut(s) 260, 354, 686
BshNI GGYRCC 1 cut(s) 800
BsiSI CCGG 1 cut(s) 406
BslFI GGGAC 1 cut(s) 1081
BslI CCNNNNNNNGG 6 cut(s) 682, 693, 887, 992, 1229, 1344
BsmAI GTCTC 2 cut(s) 370, 1328
BsmFI GGGAC 1 cut(s) 1081
BsmI GAATGC 2 cut(s) 1215, 1575
BsnI GGCC 3 cut(s) 260, 354, 686
Bso31I GGTCTC 1 cut(s) 1328
Bsp1407I TGTACA 1 cut(s) 619
Bsp143I GATC 7 cut(s) 24, 421, 645, 735, 853, 1296, 1543
Bsp19I CCATGG 1 cut(s) 505
BspACI CCGC 3 cut(s) 242, 257, 1123
BspANI GGCC 3 cut(s) 260, 354, 686
BspCNI CTCAG 6 cut(s) 98, 139, 225, 748, 954, 1101
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 5 cut(s) 753, 802, 1098, 1146, 1447
BspMAI CTGCAG 1 cut(s) 520
BspMI ACCTGC 1 cut(s) 509
BspOI GCTAGC 1 cut(s) 878
BspPI GGATC 3 cut(s) 640, 1291, 1538
BspT107I GGYRCC 1 cut(s) 800
BspTNI GGTCTC 1 cut(s) 1328
BsrDI GCAATG 2 cut(s) 27, 1386
BsrGI TGTACA 1 cut(s) 619
BsrI ACTGG 2 cut(s) 59, 1319
BssECI CCNNGG 5 cut(s) 43, 505, 881, 940, 1406
BssMI GATC 7 cut(s) 24, 421, 645, 735, 853, 1296, 1543
BssT1I CCWWGG 3 cut(s) 43, 505, 1406
Bst2UI CCWGG 3 cut(s) 776, 882, 941
Bst4CI ACNGT 3 cut(s) 289, 641, 769
BstAUI TGTACA 1 cut(s) 619
BstC8I GCNNGC 4 cut(s) 374, 876, 983, 1282
BstDEI CTNAG 7 cut(s) 85, 126, 212, 313, 756, 962, 1088
BstDSI CCRYGG 1 cut(s) 505
BstEII GGTNACC 1 cut(s) 1055
BstENI CCTNNNNNAGG 1 cut(s) 1227
BstF5I GGATG 3 cut(s) 80, 182, 1207
BstHHI GCGC 1 cut(s) 1591
BstKTI GATC 7 cut(s) 27, 424, 648, 738, 856, 1299, 1546
BstMAI GTCTC 2 cut(s) 370, 1328
BstMBI GATC 7 cut(s) 24, 421, 645, 735, 853, 1296, 1543
BstMWI GCNNNNNNNGC 1 cut(s) 964
BstNI CCWGG 3 cut(s) 776, 882, 941
BstNSI RCATGY 1 cut(s) 397
BstPI GGTNACC 1 cut(s) 1055
BstSCI CCNGG 3 cut(s) 774, 880, 939
BstSFI CTRYAG 1 cut(s) 516
BstV1I GCAGC 4 cut(s) 231, 716, 954, 1012
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 3 cut(s) 645, 1296, 1543
BstYI RGATCY 3 cut(s) 645, 1296, 1543
BsuRI GGCC 3 cut(s) 260, 354, 686
BtgI CCRYGG 1 cut(s) 505
BtsCI GGATG 3 cut(s) 80, 182, 1207
BtsI GCAGTG 1 cut(s) 827
BtsIMutI CAGTG 3 cut(s) 285, 827, 1254
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 4 cut(s) 374, 876, 983, 1282
CaiI CAGNNNCTG 1 cut(s) 1256
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 1591
Cfr13I GGNCC 3 cut(s) 352, 408, 684
Csp6I GTAC 4 cut(s) 446, 620, 1348, 1495
CspCI CAANNNNNGTGG 2 cut(s) 793, 828
CviAII CATG 7 cut(s) 275, 341, 394, 506, 577, 1373, 1391
CviQI GTAC 4 cut(s) 446, 620, 1348, 1495
DdeI CTNAG 7 cut(s) 85, 126, 212, 313, 756, 962, 1088
DpnI GATC 7 cut(s) 26, 423, 647, 737, 855, 1298, 1545
DpnII GATC 7 cut(s) 24, 421, 645, 735, 853, 1296, 1543
DrdI GACNNNNNNGTC 1 cut(s) 611
DriI GACNNNNNGTC 1 cut(s) 599
DseDI GACNNNNNNGTC 1 cut(s) 611
EaeI YGGCCR 1 cut(s) 258
Eam1105I GACNNNNNGTC 1 cut(s) 599
Eco130I CCWWGG 3 cut(s) 43, 505, 1406
Eco31I GGTCTC 1 cut(s) 1328
Eco32I GATATC 2 cut(s) 54, 1435
Eco47I GGWCC 1 cut(s) 408
Eco57I CTGAAG 2 cut(s) 1139, 1543
Eco91I GGTNACC 1 cut(s) 1055
EcoNI CCTNNNNNAGG 1 cut(s) 1227
EcoO109I RGGNCCY 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 1055
EcoRII CCWGG 3 cut(s) 774, 880, 939
EcoRV GATATC 2 cut(s) 54, 1435
EcoT14I CCWWGG 3 cut(s) 43, 505, 1406
ErhI CCWWGG 3 cut(s) 43, 505, 1406
FaeI CATG 7 cut(s) 278, 344, 397, 509, 580, 1376, 1394
FalI AAGNNNNNCTT 2 cut(s) 1399, 1431
FaqI GGGAC 1 cut(s) 1081
FatI CATG 7 cut(s) 274, 340, 393, 505, 576, 1372, 1390
FauNDI CATATG 1 cut(s) 361
FblI GTMKAC 2 cut(s) 603, 780
Fnu4HI GCNGC 5 cut(s) 245, 258, 705, 968, 1001
FokI GGATG 3 cut(s) 67, 169, 1214
Fsp4HI GCNGC 5 cut(s) 245, 258, 705, 968, 1001
FspBI CTAG 3 cut(s) 135, 875, 1331
GlaI GCGC 1 cut(s) 1590
GluI GCNGC 5 cut(s) 245, 258, 705, 968, 1001
GsuI CTGGAG 1 cut(s) 352
HaeIII GGCC 3 cut(s) 260, 354, 686
HapII CCGG 1 cut(s) 406
HhaI GCGC 1 cut(s) 1591
Hin1II CATG 7 cut(s) 278, 344, 397, 509, 580, 1376, 1394
Hin6I GCGC 1 cut(s) 1589
HinP1I GCGC 1 cut(s) 1589
HincII GTYRAC 2 cut(s) 604, 781
HindII GTYRAC 2 cut(s) 604, 781
HinfI GANTC 8 cut(s) 594, 717, 947, 1034, 1219, 1246, 1384, 1402
HpaII CCGG 1 cut(s) 406
HphI GGTGA 5 cut(s) 48, 653, 775, 914, 1472
Hpy166II GTNNAC 5 cut(s) 157, 548, 604, 637, 781
Hpy188I TCNGA 7 cut(s) 148, 215, 323, 963, 1132, 1422, 1562
Hpy188III TCNNGA 7 cut(s) 341, 389, 755, 1250, 1294, 1430, 1547
Hpy8I GTNNAC 5 cut(s) 157, 548, 604, 637, 781
Hpy99I CGWCG 1 cut(s) 617
HpyAV CCTTC 4 cut(s) 754, 893, 1000, 1320
HpyCH4III ACNGT 3 cut(s) 289, 641, 769
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 9 cut(s) 193, 518, 704, 820, 953, 1000, 1014, 1141, 1525
HpyF10VI GCNNNNNNNGC 1 cut(s) 964
HpyF3I CTNAG 7 cut(s) 85, 126, 212, 313, 756, 962, 1088
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 7 cut(s) 278, 344, 397, 509, 580, 1376, 1394
HspAI GCGC 1 cut(s) 1589
Kzo9I GATC 7 cut(s) 24, 421, 645, 735, 853, 1296, 1543
Lsp1109I GCAGC 4 cut(s) 231, 716, 954, 1012
LweI GCATC 2 cut(s) 861, 1023
MaeI CTAG 3 cut(s) 135, 875, 1331
MaeII ACGT 1 cut(s) 304
MaeIII GTNAC 5 cut(s) 572, 763, 919, 1055, 1460
MalI GATC 7 cut(s) 26, 423, 647, 737, 855, 1298, 1545
MboI GATC 7 cut(s) 24, 421, 645, 735, 853, 1296, 1543
MboII GAAGA 3 cut(s) 683, 745, 1549
MfeI CAATTG 1 cut(s) 989
MflI RGATCY 3 cut(s) 645, 1296, 1543
MlyI GAGTC 3 cut(s) 588, 726, 1378
MmeI TCCRAC 1 cut(s) 1604
MroXI GAANNNNTTC 1 cut(s) 1038
MseI TTAA 5 cut(s) 399, 747, 1311, 1352, 1491
MslI CAYNNNNRTG 4 cut(s) 345, 815, 866, 1019
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 3 cut(s) 776, 882, 941
MunI CAATTG 1 cut(s) 989
Mva1269I GAATGC 2 cut(s) 1215, 1575
MvaI CCWGG 3 cut(s) 776, 882, 941
MwoI GCNNNNNNNGC 1 cut(s) 964
NcoI CCATGG 1 cut(s) 505
NdeI CATATG 1 cut(s) 361
NdeII GATC 7 cut(s) 24, 421, 645, 735, 853, 1296, 1543
NheI GCTAGC 1 cut(s) 874
NlaIII CATG 7 cut(s) 278, 344, 397, 509, 580, 1376, 1394
NlaIV GGNNCC 5 cut(s) 753, 802, 1098, 1146, 1447
NmuCI GTSAC 2 cut(s) 763, 1460
NspI RCATGY 1 cut(s) 397
PagI TCATGA 1 cut(s) 340
PaqCI CACCTGC 1 cut(s) 509
PciI ACATGT 1 cut(s) 393
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PctI GAATGC 2 cut(s) 1215, 1575
PdmI GAANNNNTTC 1 cut(s) 1038
PfeI GAWTC 5 cut(s) 947, 1034, 1219, 1246, 1402
PflMI CCANNNNNTGG 1 cut(s) 887
PkrI GCNGC 5 cut(s) 246, 259, 706, 969, 1002
PleI GAGTC 3 cut(s) 588, 725, 1378
PpsI GAGTC 3 cut(s) 588, 725, 1378
PscI ACATGT 1 cut(s) 393
Psp6I CCWGG 3 cut(s) 774, 880, 939
PspEI GGTNACC 1 cut(s) 1055
PspGI CCWGG 3 cut(s) 774, 880, 939
PspN4I GGNNCC 5 cut(s) 753, 802, 1098, 1146, 1447
PspPI GGNCC 3 cut(s) 352, 408, 684
PstI CTGCAG 1 cut(s) 520
PstNI CAGNNNCTG 1 cut(s) 1256
PsuI RGATCY 3 cut(s) 645, 1296, 1543
RsaI GTAC 4 cut(s) 447, 621, 1349, 1496
RsaNI GTAC 4 cut(s) 446, 620, 1348, 1495
RseI CAYNNNNRTG 4 cut(s) 345, 815, 866, 1019
SalI GTCGAC 2 cut(s) 602, 779
SaqAI TTAA 5 cut(s) 399, 747, 1311, 1352, 1491
SatI GCNGC 5 cut(s) 245, 258, 705, 968, 1001
Sau3AI GATC 7 cut(s) 24, 421, 645, 735, 853, 1296, 1543
Sau96I GGNCC 3 cut(s) 352, 408, 684
SbfI CCTGCAGG 1 cut(s) 520
ScaI AGTACT 1 cut(s) 1496
SchI GAGTC 3 cut(s) 588, 726, 1378
ScrFI CCNGG 3 cut(s) 776, 882, 941
SdaI CCTGCAGG 1 cut(s) 520
SfaNI GCATC 2 cut(s) 861, 1023
SfcI CTRYAG 1 cut(s) 516
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 4 cut(s) 345, 815, 866, 1019
Sse8387I CCTGCAGG 1 cut(s) 520
SsiI CCGC 3 cut(s) 242, 257, 1123
SspI AATATT 2 cut(s) 418, 1304
SspMI CTAG 3 cut(s) 135, 875, 1331
StyD4I CCNGG 3 cut(s) 774, 880, 939
StyI CCWWGG 3 cut(s) 43, 505, 1406
TaaI ACNGT 3 cut(s) 289, 641, 769
TaiI ACGT 1 cut(s) 307
TaqI TCGA 6 cut(s) 603, 615, 651, 780, 1017, 1437
TatI WGTACW 2 cut(s) 619, 1494
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 5 cut(s) 947, 1034, 1219, 1246, 1402
Tru1I TTAA 5 cut(s) 399, 747, 1311, 1352, 1491
Tru9I TTAA 5 cut(s) 399, 747, 1311, 1352, 1491
TscAI CASTG 3 cut(s) 292, 827, 1261
TseFI GTSAC 2 cut(s) 763, 1460
TseI GCWGC 4 cut(s) 244, 704, 967, 1000
Tsp45I GTSAC 2 cut(s) 763, 1460
TspDTI ATGAA 7 cut(s) 17, 54, 69, 850, 1296, 1389, 1581
TspGWI ACGGA 2 cut(s) 19, 175
TspRI CASTG 3 cut(s) 292, 827, 1261
Van91I CCANNNNNTGG 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 1227
XapI RAATTY 3 cut(s) 76, 471, 1354
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 2 cut(s) 603, 780
XmnI GAANNNNTTC 1 cut(s) 1038
XspI CTAG 3 cut(s) 135, 875, 1331
ZrmI AGTACT 1 cut(s) 1496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.