RchiOBHm_Chr5g0017761

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
12365926 .. 12367530
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29801

Sequence Viewer

Length: 1605 bp
ATGAAGCCTTTAGTACTAGCAATGCTCTCAATGTATTCAATCCTTGGAGTGATATCACCAGTTTCATGCGCTACAAGTCCATCCTTAGTTGAAACCACTTTTCTCCAATGCCTTTCAAACCATTCTCAGTCCTCTAATCCAATATCTGGAGTCGTTTACACCTCCAACAATGCCAATTTCTCATCCGTCCTGAATTCTTATGTGAGAAATCTCAGATTTTCGACTCCCACAACCCCGAAACCGCTGCTAATTGTGGCGGCGAAGAACTATTCCCATGTTCAAGCCACTGTTGTTTGTGCCAAAAGTGTAGGCTTGGAGATCAGAATAAGAAGTGGTGGTCATGACTATGAGGGCCTATCATATGTCTCCAACAAGCCCTTTATTGTTCTTGACATGTTTAATCTCCGGTCCATCAATATTGATCTGGCTGATGAGAGTGCTTGGGTACAATCTGGTGCAACTCTTGGAGAAATTTACTATGCGATTTCTGCAAAGAGCAAAGTTCATGGATTCCCTGCTGGTGTATGCCTTACTCTTGGTGCTGGTGGACACTTCACAGGAGGTGGGTATGGTAACATGATGAGAAAATATGGTCTCTCTGTGGACAACATTGTTGATGCACAAATTGTGAATGTGAATGGTGAGATCCTCGACAGGAAATCAATGGGAGAAGACCTTTTTTGGGCCATAAGAGGAGGTGGTGCAGCAAGTTTTGGAGTCATTCTTGTTTGGAAGATCAAGTTGGTTAAGGTTCCTGAGAAGGTGACGGTGTTCCAGGTCAAAAGGACATTAGAACAAGGTGCAACAGACATTGTTGTGCAGTGGCAAAAAGTTGCTGATAATATAGAAAATGATCTGTTCGTAAGAGTGATGCTGTTACCAGGGAATGGAAGCAGAGAAGGTGAAAAGACAATCACGGCCACTTTTGTTTCCTTGTTCCTGGGGGATTCTGTAAGGCTTCTGAGGCTGCTGAATCAAAGCTTGCCTCAATTGGGTTTGCAGCAGAAGGATTGCATCGAAATGAGCTGGGTTGAATCAATTCTGTTTTGGGCTAGCTACCCTATTGGGACTTCCCTTGATGTTTTGCTCAGTAGGGTTCCAAAGGGACTAACATTCCTGAAGCGGAAATCAGATTATGTGCAGGAACCGATTTCAAAGACAGATTTGGAAGCTTTGTGGAAAGTGATGATAGAAATTGGTGATGGTGGAATGCTGTGGAATCCTTATGGAGGAAAAATGAGTGAGATTTCAGCCACTGAAACTCCATTTCCACATAGAGCAGGCAACATATTCAAGATCCAATATTCATTTAACTGGAAAGATGGAGAGCTTGAGACTACCAACAGGTACTTAAATTTGACTAGACAACTTCATGAGGCAATGACTCCTCATGTGTCCAAGAGTCCAAGGGAGGCTTTTCTCAACTACCGGGATATCGACATTGGAACCAATACAGAGGGTGAATACAAGGAAGGAGAAGTGTATGGGATTAAGTACTTCAAGCACAATTTTGAAAGATTAGTTCGGATTAAAACAAAGGTAGATCCTGATAATTTCTTTAGAAATGAACAGAGCATTCCAACTCTTCCGCCCCAAGTATTATGA
Functional Annotation

Protein Analysis

534

Amino Acids

59.35

Weight (kDa)

8.37

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 81 - 217 1.1e-22 FAD binding domain
BBE PF08031 472 - 527 2.3e-20 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013793)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 146, 887
AciI CCGC 4 cut(s) 242, 257, 1123, 1589
AclWI GGATC 3 cut(s) 640, 1291, 1538
AcoI YGGCCR 1 cut(s) 918
AcsI RAATTY 3 cut(s) 193, 471, 1354
AcuI CTGAAG 1 cut(s) 1139
AfaI GTAC 4 cut(s) 15, 447, 1349, 1496
AfiI CCNNNNNNNGG 5 cut(s) 146, 682, 887, 992, 1229
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 9 cut(s) 39, 92, 117, 281, 1034, 1155, 1294, 1501, 1514
AjnI CCWGG 3 cut(s) 774, 880, 939
AjuI GAANNNNNNNTTGG 2 cut(s) 725, 757
AluBI AGCT 5 cut(s) 981, 1026, 1056, 1172, 1330
AluI AGCT 5 cut(s) 981, 1026, 1056, 1172, 1330
Alw26I GTCTC 3 cut(s) 370, 599, 1328
AlwI GGATC 3 cut(s) 640, 1291, 1538
AlwNI CAGNNNCTG 1 cut(s) 1256
AoxI GGCC 3 cut(s) 352, 684, 918
ApeKI GCWGC 4 cut(s) 244, 704, 967, 1000
ApoI RAATTY 3 cut(s) 193, 471, 1354
Asp700I GAANNNNTTC 1 cut(s) 1038
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 3 cut(s) 352, 408, 684
AsuC2I CCSGG 1 cut(s) 1430
AsuHPI GGTGA 6 cut(s) 48, 653, 775, 914, 1211, 1472
AsuNHI GCTAGC 1 cut(s) 1052
AvaII GGWCC 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 4 cut(s) 231, 716, 954, 1012
BccI CCATC 4 cut(s) 88, 419, 1196, 1316
BceAI ACGGC 1 cut(s) 933
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 3 cut(s) 776, 882, 941
BcnI CCSGG 1 cut(s) 1430
BcoDI GTCTC 3 cut(s) 370, 599, 1328
BfaI CTAG 3 cut(s) 17, 1053, 1362
BisI GCNGC 5 cut(s) 245, 258, 705, 968, 1001
BlsI GCNGC 5 cut(s) 246, 259, 706, 969, 1002
BmcAI AGTACT 2 cut(s) 15, 1496
Bme1390I CCNGG 4 cut(s) 776, 882, 941, 1430
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 3 cut(s) 352, 408, 684
BmiI GGNNCC 4 cut(s) 753, 1098, 1146, 1447
BmrFI CCNGG 4 cut(s) 776, 882, 941, 1430
BmsI GCATC 3 cut(s) 607, 861, 1023
BmtI GCTAGC 1 cut(s) 1056
BpiI GAAGAC 1 cut(s) 678
BpmI CTGGAG 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 1352
BpuMI CCSGG 1 cut(s) 1430
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 4 cut(s) 43, 881, 940, 1406
BsaWI WCCGGW 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 1246, 1276
Bsc4I CCNNNNNNNGG 5 cut(s) 146, 682, 887, 992, 1229
Bse1I ACTGG 2 cut(s) 59, 1319
Bse3DI GCAATG 2 cut(s) 27, 1386
BseBI CCWGG 3 cut(s) 776, 882, 941
BseDI CCNNGG 4 cut(s) 43, 881, 940, 1406
BseGI GGATG 2 cut(s) 80, 182
BseLI CCNNNNNNNGG 5 cut(s) 146, 682, 887, 992, 1229
BseMI GCAATG 2 cut(s) 27, 1386
BseMII CTCAG 5 cut(s) 140, 226, 747, 953, 1102
BseNI ACTGG 2 cut(s) 59, 1319
BseRI GAGGAG 2 cut(s) 708, 1377
BseXI GCAGC 4 cut(s) 231, 716, 954, 1012
BseYI CCCAGC 1 cut(s) 1026
BsgI GTGCAG 3 cut(s) 723, 839, 1160
BshFI GGCC 3 cut(s) 354, 686, 920
BsiSI CCGG 2 cut(s) 406, 1429
BslFI GGGAC 2 cut(s) 1081, 1119
BslI CCNNNNNNNGG 5 cut(s) 146, 682, 887, 992, 1229
BsmAI GTCTC 3 cut(s) 370, 599, 1328
BsmFI GGGAC 2 cut(s) 1081, 1119
BsmI GAATGC 2 cut(s) 1215, 1575
BsnI GGCC 3 cut(s) 354, 686, 920
Bso31I GGTCTC 1 cut(s) 599
Bsp143I GATC 7 cut(s) 318, 421, 645, 735, 853, 1296, 1543
BspACI CCGC 4 cut(s) 242, 257, 1123, 1589
BspANI GGCC 3 cut(s) 354, 686, 920
BspCNI CTCAG 5 cut(s) 139, 225, 748, 954, 1101
BspHI TCATGA 2 cut(s) 340, 1372
BspLI GGNNCC 4 cut(s) 753, 1098, 1146, 1447
BspOI GCTAGC 1 cut(s) 1056
BspPI GGATC 3 cut(s) 640, 1291, 1538
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 2 cut(s) 27, 1386
BsrI ACTGG 2 cut(s) 59, 1319
BssECI CCNNGG 4 cut(s) 43, 881, 940, 1406
BssMI GATC 7 cut(s) 318, 421, 645, 735, 853, 1296, 1543
BssT1I CCWWGG 2 cut(s) 43, 1406
Bst2UI CCWGG 3 cut(s) 776, 882, 941
Bst4CI ACNGT 2 cut(s) 289, 769
Bst6I CTCTTC 1 cut(s) 1590
BstC8I GCNNGC 3 cut(s) 983, 1054, 1282
BstDEI CTNAG 6 cut(s) 85, 126, 212, 756, 962, 1088
BstENI CCTNNNNNAGG 1 cut(s) 1227
BstF5I GGATG 2 cut(s) 80, 182
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 7 cut(s) 321, 424, 648, 738, 856, 1299, 1546
BstMAI GTCTC 3 cut(s) 370, 599, 1328
BstMBI GATC 7 cut(s) 318, 421, 645, 735, 853, 1296, 1543
BstMWI GCNNNNNNNGC 2 cut(s) 488, 964
BstNI CCWGG 3 cut(s) 776, 882, 941
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 4 cut(s) 774, 880, 939, 1428
BstV1I GCAGC 4 cut(s) 231, 716, 954, 1012
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 3 cut(s) 645, 1296, 1543
BstYI RGATCY 3 cut(s) 645, 1296, 1543
BsuRI GGCC 3 cut(s) 354, 686, 920
BtsCI GGATG 2 cut(s) 80, 182
BtsI GCAGTG 1 cut(s) 827
BtsIMutI CAGTG 3 cut(s) 285, 827, 1254
Cac8I GCNNGC 3 cut(s) 983, 1054, 1282
CaiI CAGNNNCTG 1 cut(s) 1256
CciI TCATGA 2 cut(s) 340, 1372
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 3 cut(s) 352, 408, 684
Csp6I GTAC 4 cut(s) 14, 446, 1348, 1495
CviAII CATG 8 cut(s) 66, 275, 341, 394, 506, 577, 1373, 1391
CviQI GTAC 4 cut(s) 14, 446, 1348, 1495
DdeI CTNAG 6 cut(s) 85, 126, 212, 756, 962, 1088
DpnI GATC 7 cut(s) 320, 423, 647, 737, 855, 1298, 1545
DpnII GATC 7 cut(s) 318, 421, 645, 735, 853, 1296, 1543
EaeI YGGCCR 1 cut(s) 918
Eam1104I CTCTTC 1 cut(s) 1590
EarI CTCTTC 1 cut(s) 1590
EciI GGCGGA 1 cut(s) 1578
Eco130I CCWWGG 2 cut(s) 43, 1406
Eco31I GGTCTC 1 cut(s) 599
Eco32I GATATC 2 cut(s) 54, 1435
Eco47I GGWCC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 1139
EcoNI CCTNNNNNAGG 1 cut(s) 1227
EcoO109I RGGNCCY 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 3 cut(s) 774, 880, 939
EcoRV GATATC 2 cut(s) 54, 1435
EcoT14I CCWWGG 2 cut(s) 43, 1406
ErhI CCWWGG 2 cut(s) 43, 1406
FaeI CATG 8 cut(s) 69, 278, 344, 397, 509, 580, 1376, 1394
FalI AAGNNNNNCTT 2 cut(s) 1399, 1431
FaqI GGGAC 2 cut(s) 1081, 1119
FatI CATG 8 cut(s) 65, 274, 340, 393, 505, 576, 1372, 1390
FauNDI CATATG 1 cut(s) 361
Fnu4HI GCNGC 5 cut(s) 245, 258, 705, 968, 1001
FokI GGATG 2 cut(s) 67, 169
Fsp4HI GCNGC 5 cut(s) 245, 258, 705, 968, 1001
FspBI CTAG 3 cut(s) 17, 1053, 1362
GlaI GCGC 1 cut(s) 70
GluI GCNGC 5 cut(s) 245, 258, 705, 968, 1001
GsaI CCCAGC 1 cut(s) 1030
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 3 cut(s) 354, 686, 920
HapII CCGG 2 cut(s) 406, 1429
HhaI GCGC 1 cut(s) 71
Hin1II CATG 8 cut(s) 69, 278, 344, 397, 509, 580, 1376, 1394
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HindIII AAGCTT 2 cut(s) 979, 1170
HpaII CCGG 2 cut(s) 406, 1429
HphI GGTGA 6 cut(s) 48, 653, 775, 914, 1211, 1472
Hpy166II GTNNAC 3 cut(s) 157, 548, 604
Hpy188I TCNGA 5 cut(s) 215, 323, 963, 1132, 1527
Hpy188III TCNNGA 9 cut(s) 147, 190, 341, 389, 755, 1117, 1294, 1373, 1547
Hpy8I GTNNAC 3 cut(s) 157, 548, 604
HpyAV CCTTC 4 cut(s) 754, 893, 1000, 1466
HpyCH4III ACNGT 2 cut(s) 289, 769
HpyCH4V TGCA 9 cut(s) 458, 491, 620, 704, 803, 820, 1000, 1014, 1141
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 964
HpyF3I CTNAG 6 cut(s) 85, 126, 212, 756, 962, 1088
Hsp92II CATG 8 cut(s) 69, 278, 344, 397, 509, 580, 1376, 1394
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 7 cut(s) 318, 421, 645, 735, 853, 1296, 1543
Lsp1109I GCAGC 4 cut(s) 231, 716, 954, 1012
LweI GCATC 3 cut(s) 607, 861, 1023
MaeI CTAG 3 cut(s) 17, 1053, 1362
MaeIII GTNAC 3 cut(s) 572, 763, 876
MalI GATC 7 cut(s) 320, 423, 647, 737, 855, 1298, 1545
MboI GATC 7 cut(s) 318, 421, 645, 735, 853, 1296, 1543
MboII GAAGA 4 cut(s) 274, 683, 745, 1577
MfeI CAATTG 1 cut(s) 989
MflI RGATCY 3 cut(s) 645, 1296, 1543
MlyI GAGTC 5 cut(s) 159, 217, 726, 1378, 1411
MmeI TCCRAC 3 cut(s) 189, 393, 1604
MroXI GAANNNNTTC 1 cut(s) 1038
MseI TTAA 6 cut(s) 399, 747, 1311, 1352, 1491, 1530
MslI CAYNNNNRTG 3 cut(s) 345, 815, 1019
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 2 cut(s) 406, 1429
MspR9I CCNGG 4 cut(s) 776, 882, 941, 1430
MunI CAATTG 1 cut(s) 989
Mva1269I GAATGC 2 cut(s) 1215, 1575
MvaI CCWGG 3 cut(s) 776, 882, 941
MwoI GCNNNNNNNGC 2 cut(s) 488, 964
NciI CCSGG 1 cut(s) 1430
NdeI CATATG 1 cut(s) 361
NdeII GATC 7 cut(s) 318, 421, 645, 735, 853, 1296, 1543
NheI GCTAGC 1 cut(s) 1052
NlaIII CATG 8 cut(s) 69, 278, 344, 397, 509, 580, 1376, 1394
NlaIV GGNNCC 4 cut(s) 753, 1098, 1146, 1447
NmuCI GTSAC 1 cut(s) 763
NspI RCATGY 1 cut(s) 397
PagI TCATGA 2 cut(s) 340, 1372
PciI ACATGT 1 cut(s) 393
PctI GAATGC 2 cut(s) 1215, 1575
PdmI GAANNNNTTC 1 cut(s) 1038
PfeI GAWTC 5 cut(s) 510, 947, 973, 1034, 1219
PflMI CCANNNNNTGG 2 cut(s) 146, 887
PkrI GCNGC 5 cut(s) 246, 259, 706, 969, 1002
PleI GAGTC 5 cut(s) 158, 217, 725, 1378, 1410
PpsI GAGTC 5 cut(s) 158, 217, 725, 1378, 1410
PscI ACATGT 1 cut(s) 393
Psp6I CCWGG 3 cut(s) 774, 880, 939
PspFI CCCAGC 1 cut(s) 1026
PspGI CCWGG 3 cut(s) 774, 880, 939
PspN4I GGNNCC 4 cut(s) 753, 1098, 1146, 1447
PspPI GGNCC 3 cut(s) 352, 408, 684
PstNI CAGNNNCTG 1 cut(s) 1256
PsuI RGATCY 3 cut(s) 645, 1296, 1543
RsaI GTAC 4 cut(s) 15, 447, 1349, 1496
RsaNI GTAC 4 cut(s) 14, 446, 1348, 1495
RseI CAYNNNNRTG 3 cut(s) 345, 815, 1019
SaqAI TTAA 6 cut(s) 399, 747, 1311, 1352, 1491, 1530
SatI GCNGC 5 cut(s) 245, 258, 705, 968, 1001
Sau3AI GATC 7 cut(s) 318, 421, 645, 735, 853, 1296, 1543
Sau96I GGNCC 3 cut(s) 352, 408, 684
ScaI AGTACT 2 cut(s) 15, 1496
SchI GAGTC 5 cut(s) 159, 217, 726, 1378, 1411
ScrFI CCNGG 4 cut(s) 776, 882, 941, 1430
SfaNI GCATC 3 cut(s) 607, 861, 1023
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 3 cut(s) 345, 815, 1019
SmlI CTYRAG 1 cut(s) 1331
SmoI CTYRAG 1 cut(s) 1331
SsiI CCGC 4 cut(s) 242, 257, 1123, 1589
SspI AATATT 2 cut(s) 418, 1304
SspMI CTAG 3 cut(s) 17, 1053, 1362
StyD4I CCNGG 4 cut(s) 774, 880, 939, 1428
StyI CCWWGG 2 cut(s) 43, 1406
TaaI ACNGT 2 cut(s) 289, 769
TaqI TCGA 4 cut(s) 221, 651, 1017, 1437
TatI WGTACW 2 cut(s) 13, 1494
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 5 cut(s) 510, 947, 973, 1034, 1219
Tru1I TTAA 6 cut(s) 399, 747, 1311, 1352, 1491, 1530
Tru9I TTAA 6 cut(s) 399, 747, 1311, 1352, 1491, 1530
TscAI CASTG 3 cut(s) 292, 827, 1261
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 4 cut(s) 244, 704, 967, 1000
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 6 cut(s) 17, 54, 494, 1296, 1361, 1581
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 3 cut(s) 292, 827, 1261
Van91I CCANNNNNTGG 2 cut(s) 146, 887
VpaK11BI GGWCC 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 1227
XapI RAATTY 3 cut(s) 193, 471, 1354
XceI RCATGY 1 cut(s) 397
XmnI GAANNNNTTC 1 cut(s) 1038
XspI CTAG 3 cut(s) 17, 1053, 1362
ZrmI AGTACT 2 cut(s) 15, 1496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.