Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008713

Physical Location & Seq

Genomic Coordinates Reverse (-)

11037552 .. 11040084

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGAAAGCTTTTAGATCTCTACGTATACTAATTTCCATCTCACGAACGACGACGAAGACAACACCTCGTAATCCCCATCAAGCACAAAACTTTCTCCGCCGATTTTACTCAGCGCAGCCGAATCTAGACGAACCCACTTCCATCAATGAAGACGGATCAAGCAGCGACTCTGTTTTCGATAGTAGTCAATACCCAATCGACGATTCCAATGTAGATTCCGTGAAGAAGCCCAAGGAAGCAACTTGGGATAAAGGGTACAGAGAAAGAGTAAACAAAGCCTTCTTTGGAAACTTGACAGAGAAAGGTAAAGTGAAAGTTGCAGAAGAAGAGAGTTCTGAAGATGATGAGGATAGTGTTGATAGGTCAAGGATTCTCGCTAAGGCTCTCTTAGAGGCTGCGTTAGAGTCACCAGATGAAGAACTTGGTGAAGGTGAAGTTAGAGAAGAAGATCAGAAGTCGCTTAATGTCGGCATCATCGGTCCACCTAATGCAGGAAAATCTTCGCTGACTAATTTCATGGTTGGAACAAAGGTTGCTGCTGCTTCACGGAAGACTAACACGACGACACATGAAGTGTTAGGAGTATTGACAAAAGGAGATACACAAGTCTGTTTCTTCGATACTCCGGGTCTGATGCTGAAGAAAAGCGGATATGGTTACAAAGACATCAAGGCTCGTGTGCAAAATGCTTGGACTTCTGTTGACCTGTTTGATGTCCTCATTGTTATGTTTGATGTCCATAGGCATCTCATGAGTCCCGATTCAAGAGTGGTACGCTTGATCAAATACATGGGAGAAGAAGAAAATCCGAAACAAAAGCGCGTTTTATGTATGAACAAAGTTGATCTGGTTGAGAAGAAAAAGGATCTATTAAAGGTTGCTGAGGAGTTCCAAGATCTTCCGGCATATGAAAGATACTTCATGATATCGGGACTTAAGGGATCAGGAGTGAAAGATCTTTCCCAATACTTAATGGATCAGGCTGTTAAAAAACCATGGGAAGAAGATGCATTCACGATGAGTGAAGAAGTCTTGAAGAACATTTCTCTTGAAGTTGTTAGGGAGAGATTACTAGACCATGTCCATCAGGAAATACCATATGGTCTGGAGCACCGTCTAGTGGACTGGAAAGAGCTGCGTGACGGGTCTCTTAGAATTGAACAGCATCTCATCACTCCTAAACTTAGCCAACGCAAGATTCTTGTAGGCAAGGGCGGTTGCAAGATCGGGAGGATAGGAATTGAGGCCAATGAAGAACTCAGGAGAATAATGAACCGCAAAGTTCATCTCATTCTCCAGGTTAAGCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0043021 GO:0043022 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0097177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

437

Amino Acids

49.67

Weight (kDa)

7.14

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	155 - 280	1.6e-17	50S ribosome-binding GTPase
KH_2	PF07650	364 - 435	7.8e-08	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30960
fragaria_vesca	FvH4_3g12950 FvH4_3g12950
malus_domestica	MD05G1246900.v1.1 MD10G1227500.v1.1
prunus_persica	Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1
pyrus_communis	pycom05g22280 pycom10g19100
rosa_chinensis	RchiOBHm_Chr5g0021061
rosa_laevigata	RLG00000032580
rosa_multiflora	Rmu_ssc0000244.1_g000017
rosa_roxburghii	Rroxscaffold_1G00057400
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug05G0063900 Rorug05G0064000
rosa_samantha	Rh5AG153600 Rh5BG153300 Rh5CG166200 Rh5DG152900
rosa_wichuraiana	Rw5G013650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	25
AccII	CGCG	1 cut(s)	822
AciI	CCGC	4 cut(s)	97, 648, 1215, 1276
AclWI	GGATC	4 cut(s)	163, 873, 949, 984
AcuI	CTGAAG	2 cut(s)	357, 659
AfaI	GTAC	2 cut(s)	257, 774
AfiI	CCNNNNNNNGG	2 cut(s)	491, 1120
AflII	CTTAAG	1 cut(s)	935
AgsI	TTSAA	4 cut(s)	765, 1036, 1052, 1160
AjnI	CCWGG	1 cut(s)	1296
AjuI	GAANNNNNNNTTGG	4 cut(s)	187, 219, 1182, 1214
AluBI	AGCT	3 cut(s)	8, 1135, 1306
AluI	AGCT	3 cut(s)	8, 1135, 1306
Alw21I	GWGCWC	1 cut(s)	1113
Alw26I	GTCTC	1 cut(s)	1152
AlwI	GGATC	4 cut(s)	163, 873, 949, 984
AoxI	GGCC	1 cut(s)	1245
ApeKI	GCWGC	6 cut(s)	115, 162, 395, 536, 539, 1135
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp700I	GAANNNNTTC	1 cut(s)	499
AspLEI	GCGC	2 cut(s)	115, 822
AspS9I	GGNCC	1 cut(s)	479
AsuC2I	CCSGG	1 cut(s)	627
AsuHPI	GGTGA	3 cut(s)	399, 437, 443
AvaII	GGWCC	1 cut(s)	479
BaeI	ACNNNNGTAYC	2 cut(s)	591, 624
BauI	CACGAG	1 cut(s)	675
BbsI	GAAGAC	3 cut(s)	62, 156, 557
Bbv12I	GWGCWC	1 cut(s)	1113
BbvCI	CCTCAGC	1 cut(s)	882
BbvI	GCAGC	6 cut(s)	127, 174, 382, 523, 526, 1122
BccI	CCATC	4 cut(s)	44, 84, 149, 1092
BciT130I	CCWGG	1 cut(s)	1298
BclI	TGATCA	1 cut(s)	780
BcnI	CCSGG	1 cut(s)	627
BcoDI	GTCTC	1 cut(s)	1152
BfaI	CTAG	3 cut(s)	125, 1073, 1118
BfrI	CTTAAG	1 cut(s)	935
BglII	AGATCT	3 cut(s)	14, 895, 955
BisI	GCNGC	6 cut(s)	116, 163, 396, 537, 540, 1136
BlsI	GCNGC	6 cut(s)	117, 164, 397, 538, 541, 1137
Bme1390I	CCNGG	2 cut(s)	627, 1298
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmrFI	CCNGG	2 cut(s)	627, 1298
BmsI	GCATC	5 cut(s)	480, 624, 754, 997, 1174
BpiI	GAAGAC	3 cut(s)	62, 156, 557
BpmI	CTGGAG	2 cut(s)	1127, 1280
Bpu10I	CCTNAGC	2 cut(s)	378, 882
BpuEI	CTTGAG	1 cut(s)	1292
BpuMI	CCSGG	1 cut(s)	627
BsaAI	YACGTR	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	1152
BsaJI	CCNNGG	2 cut(s)	231, 995
Bsc4I	CCNNNNNNNGG	2 cut(s)	491, 1120
Bse1I	ACTGG	1 cut(s)	1130
BseBI	CCWGG	1 cut(s)	1298
BseDI	CCNNGG	2 cut(s)	231, 995
BseLI	CCNNNNNNNGG	2 cut(s)	491, 1120
BseMII	CTCAG	3 cut(s)	123, 873, 1273
BseNI	ACTGG	1 cut(s)	1130
BseRI	GAGGAG	1 cut(s)	899
BseXI	GCAGC	6 cut(s)	127, 174, 382, 523, 526, 1122
Bsh1236I	CGCG	1 cut(s)	822
BshFI	GGCC	1 cut(s)	1247
BsiHKAI	GWGCWC	1 cut(s)	1113
BsiSI	CCGG	2 cut(s)	626, 902
BslFI	GGGAC	2 cut(s)	741, 945
BslI	CCNNNNNNNGG	2 cut(s)	491, 1120
BsmAI	GTCTC	1 cut(s)	1152
BsmFI	GGGAC	2 cut(s)	741, 945
BsmI	GAATGC	1 cut(s)	1010
BsnI	GGCC	1 cut(s)	1247
Bso31I	GGTCTC	1 cut(s)	1152
Bsp1286I	GDGCHC	1 cut(s)	1113
Bsp19I	CCATGG	1 cut(s)	995
BspACI	CCGC	4 cut(s)	97, 648, 1215, 1276
BspANI	GGCC	1 cut(s)	1247
BspCNI	CTCAG	3 cut(s)	122, 874, 1272
BspFNI	CGCG	1 cut(s)	822
BspHI	TCATGA	2 cut(s)	750, 921
BspPI	GGATC	4 cut(s)	163, 873, 949, 984
BspTI	CTTAAG	1 cut(s)	935
BspTNI	GGTCTC	1 cut(s)	1152
BsrI	ACTGG	1 cut(s)	1130
BssECI	CCNNGG	2 cut(s)	231, 995
BssNAI	GTATAC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	675
BssT1I	CCWWGG	2 cut(s)	231, 995
Bst1107I	GTATAC	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	675
Bst2UI	CCWGG	1 cut(s)	1298
Bst4CI	ACNGT	1 cut(s)	1115
Bst6I	CTCTTC	1 cut(s)	321
BstAFI	CTTAAG	1 cut(s)	935
BstBAI	YACGTR	1 cut(s)	23
BstDEI	CTNAG	7 cut(s)	109, 378, 388, 882, 1151, 1184, 1259
BstDSI	CCRYGG	1 cut(s)	995
BstENI	CCTNNNNNAGG	1 cut(s)	489
BstFNI	CGCG	1 cut(s)	822
BstHHI	GCGC	2 cut(s)	115, 822
BstMAI	GTCTC	1 cut(s)	1152
BstNI	CCWGG	1 cut(s)	1298
BstSCI	CCNGG	2 cut(s)	625, 1296
BstSNI	TACGTA	1 cut(s)	23
BstUI	CGCG	1 cut(s)	822
BstV1I	GCAGC	6 cut(s)	127, 174, 382, 523, 526, 1122
BstV2I	GAAGAC	3 cut(s)	62, 156, 557
BstX2I	RGATCY	4 cut(s)	14, 865, 895, 955
BstYI	RGATCY	4 cut(s)	14, 865, 895, 955
BstZ17I	GTATAC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	1247
BtgI	CCRYGG	1 cut(s)	995
CciI	TCATGA	2 cut(s)	750, 921
CfoI	GCGC	2 cut(s)	115, 822
Cfr13I	GGNCC	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	256, 773
CviAII	CATG	7 cut(s)	517, 569, 751, 790, 922, 996, 1079
CviQI	GTAC	2 cut(s)	256, 773
DdeI	CTNAG	7 cut(s)	109, 378, 388, 882, 1151, 1184, 1259
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EciI	GGCGGA	1 cut(s)	86
Eco105I	TACGTA	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	231, 995
Eco31I	GGTCTC	1 cut(s)	1152
Eco32I	GATATC	1 cut(s)	927
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	2 cut(s)	357, 659
EcoNI	CCTNNNNNAGG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	1296
EcoRV	GATATC	1 cut(s)	927
EcoT14I	CCWWGG	2 cut(s)	231, 995
EcoT22I	ATGCAT	1 cut(s)	1012
ErhI	CCWWGG	2 cut(s)	231, 995
FaeI	CATG	7 cut(s)	520, 572, 754, 793, 925, 999, 1082
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	2 cut(s)	741, 945
FatI	CATG	7 cut(s)	516, 568, 750, 789, 921, 995, 1078
FauNDI	CATATG	2 cut(s)	907, 1099
FbaI	TGATCA	1 cut(s)	780
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	6 cut(s)	116, 163, 396, 537, 540, 1136
Fsp4HI	GCNGC	6 cut(s)	116, 163, 396, 537, 540, 1136
FspBI	CTAG	3 cut(s)	125, 1073, 1118
GlaI	GCGC	2 cut(s)	114, 821
GluI	GCNGC	6 cut(s)	116, 163, 396, 537, 540, 1136
GsuI	CTGGAG	2 cut(s)	1127, 1280
HaeIII	GGCC	1 cut(s)	1247
HapII	CCGG	2 cut(s)	626, 902
HhaI	GCGC	2 cut(s)	115, 822
Hin1II	CATG	7 cut(s)	520, 572, 754, 793, 925, 999, 1082
Hin6I	GCGC	2 cut(s)	113, 820
HinP1I	GCGC	2 cut(s)	113, 820
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	9 cut(s)	121, 167, 203, 215, 370, 404, 754, 761, 1198
HpaII	CCGG	2 cut(s)	626, 902
HphI	GGTGA	3 cut(s)	399, 437, 443
Hpy166II	GTNNAC	5 cut(s)	26, 271, 482, 703, 1123
Hpy188I	TCNGA	4 cut(s)	337, 453, 633, 810
Hpy8I	GTNNAC	5 cut(s)	26, 271, 482, 703, 1123
Hpy99I	CGWCG	4 cut(s)	52, 55, 203, 565
HpyAV	CCTTC	2 cut(s)	289, 422
HpyCH4III	ACNGT	1 cut(s)	1115
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	5 cut(s)	320, 491, 682, 1010, 1221
HpyF3I	CTNAG	7 cut(s)	109, 378, 388, 882, 1151, 1184, 1259
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	7 cut(s)	520, 572, 754, 793, 925, 999, 1082
HspAI	GCGC	2 cut(s)	113, 820
Ksp22I	TGATCA	1 cut(s)	780
LmnI	GCTCC	1 cut(s)	1108
Lsp1109I	GCAGC	6 cut(s)	127, 174, 382, 523, 526, 1122
LweI	GCATC	5 cut(s)	480, 624, 754, 997, 1174
MaeI	CTAG	3 cut(s)	125, 1073, 1118
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	3 cut(s)	405, 656, 1139
MflI	RGATCY	4 cut(s)	14, 865, 895, 955
MhlI	GDGCHC	1 cut(s)	1113
MluCI	AATT	4 cut(s)	30, 511, 1155, 1239
MlyI	GAGTC	3 cut(s)	161, 413, 763
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	7 cut(s)	75, 340, 385, 728, 877, 1224, 1237
Mph1103I	ATGCAT	1 cut(s)	1012
MroXI	GAANNNNTTC	1 cut(s)	499
MseI	TTAA	6 cut(s)	462, 872, 936, 971, 987, 1302
MslI	CAYNNNNRTG	1 cut(s)	725
MspCI	CTTAAG	1 cut(s)	935
MspI	CCGG	2 cut(s)	626, 902
MspR9I	CCNGG	2 cut(s)	627, 1298
Mva1269I	GAATGC	1 cut(s)	1010
MvaI	CCWGG	1 cut(s)	1298
MvnI	CGCG	1 cut(s)	822
NciI	CCSGG	1 cut(s)	627
NcoI	CCATGG	1 cut(s)	995
NdeI	CATATG	2 cut(s)	907, 1099
NlaIII	CATG	7 cut(s)	520, 572, 754, 793, 925, 999, 1082
NmuCI	GTSAC	2 cut(s)	405, 1139
NsiI	ATGCAT	1 cut(s)	1012
PagI	TCATGA	2 cut(s)	750, 921
PctI	GAATGC	1 cut(s)	1010
PdmI	GAANNNNTTC	1 cut(s)	499
PfeI	GAWTC	6 cut(s)	121, 203, 215, 370, 761, 1198
PflFI	GACNNNGTC	1 cut(s)	1079
PkrI	GCNGC	6 cut(s)	117, 164, 397, 538, 541, 1137
PleI	GAGTC	3 cut(s)	161, 412, 762
PpsI	GAGTC	3 cut(s)	161, 412, 762
Ppu21I	YACGTR	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	1296
PspGI	CCWGG	1 cut(s)	1296
PspPI	GGNCC	1 cut(s)	479
PsuI	RGATCY	4 cut(s)	14, 865, 895, 955
PsyI	GACNNNGTC	1 cut(s)	1079
RsaI	GTAC	2 cut(s)	257, 774
RsaNI	GTAC	2 cut(s)	256, 773
RseI	CAYNNNNRTG	1 cut(s)	725
SaqAI	TTAA	6 cut(s)	462, 872, 936, 971, 987, 1302
SatI	GCNGC	6 cut(s)	116, 163, 396, 537, 540, 1136
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	3 cut(s)	161, 413, 763
ScrFI	CCNGG	2 cut(s)	627, 1298
SduI	GDGCHC	1 cut(s)	1113
SfaNI	GCATC	5 cut(s)	480, 624, 754, 997, 1174
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	725
SmlI	CTYRAG	2 cut(s)	935, 1307
SmoI	CTYRAG	2 cut(s)	935, 1307
SnaBI	TACGTA	1 cut(s)	23
Sse9I	AATT	4 cut(s)	30, 511, 1155, 1239
SsiI	CCGC	4 cut(s)	97, 648, 1215, 1276
SspMI	CTAG	3 cut(s)	125, 1073, 1118
StyD4I	CCNGG	2 cut(s)	625, 1296
StyI	CCWWGG	2 cut(s)	231, 995
TaaI	ACNGT	1 cut(s)	1115
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	3 cut(s)	177, 198, 618
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	4 cut(s)	30, 511, 1155, 1239
TfiI	GAWTC	6 cut(s)	121, 203, 215, 370, 761, 1198
Tru1I	TTAA	6 cut(s)	462, 872, 936, 971, 987, 1302
Tru9I	TTAA	6 cut(s)	462, 872, 936, 971, 987, 1302
TseFI	GTSAC	2 cut(s)	405, 1139
TseI	GCWGC	6 cut(s)	115, 162, 395, 536, 539, 1135
Tsp45I	GTSAC	2 cut(s)	405, 1139
TspGWI	ACGGA	3 cut(s)	168, 208, 562
Tth111I	GACNNNGTC	1 cut(s)	1079
Vha464I	CTTAAG	1 cut(s)	935
VpaK11BI	GGWCC	1 cut(s)	479
XagI	CCTNNNNNAGG	1 cut(s)	489
XbaI	TCTAGA	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	499
XspI	CTAG	3 cut(s)	125, 1073, 1118
Zsp2I	ATGCAT	1 cut(s)	1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.