Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008713

Physical Location & Seq

Genomic Coordinates Forward (+)

5542380 .. 5543676

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0063900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGAGCCTTTCATTATCGAAGAATCTCATCTTCAACCTCTCAAAGTCGTTTCCTCAATCCCAAGTTTCACTCTCTCTCAGACCCTCTCTCAAAATCTCCAGGGTCTGCTTCATCTCCGCCTCCAAATTCTCCGAGGGTCGAAATGCGGCGGAGGAGAATAGGGATTCAAATTCTCACCGGGCGTATGCCGATAAGGACTGGAGGGACAAGGAAAGAGGGTACGGCTCTGCTGACTTGAGCAAGCACGCGAAAGAAACCATGGAAGAAGGACTAGAAAAAACCAAGCGGGAAGCAGAGGAGATGAAAGAGAGAGCGAAGGATTACGCCTACGAAGCTAAGGAGAAGACAAAGAGTGCGGCGGAAACCATGGAGGAGGAGACCAAAGAGGGAACGTATAAGGCTTCAGAGACAGTGGAGAGTGCCAAGGAGAAGGCAAAGGACTACGCTTATGATGCTAAGGAGAAGACGAAAGACATGGCTGGAACTGTGGCGGAGAAGGCTAAGGAGGGGACTCACAAGGTGGCGAAGACTGCGGGGAGTGCTAAGGAGAAGGCCAAGGACACGGTTTATGAGGCGACTGAGAAGGCGGAGGGTGTGGCGCAGACGGTGGCGGATAAGGGGAAGGGAGGGACACATAAGGCTGCGGAGACCGTGAAGGATACAGTGAAGGGCGCTTGGGAGGCGACTAAGGAGACGGGGCAGGCAATCAAGGAGGCAGTTGTGGGGGCCGATGAGGAGGTGGCAGTGGTTGTGGAGGACACGTCAGATGATGATGTGGTGGTTGATCTTGTCGAAGGGAGTATTTCGTCCGATGAAGATGTGGCGGTGACCGGAGGGAAGGTGATGGATGCGGATGTCATTGAGCGGAGGCGGGCTGCTGGGTATAGGTCCGATGAGGACCTGTCGGCGGAGTCGGAGCTTAGGCGGCGGACCGCCTATAAGAAGGCCGGTGACAAGAAAGATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

323

Amino Acids

35.27

Weight (kDa)

5.36

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30960
fragaria_vesca	FvH4_3g12950 FvH4_3g12950
malus_domestica	MD05G1246900.v1.1 MD10G1227500.v1.1
prunus_persica	Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1
pyrus_communis	pycom05g22280 pycom10g19100
rosa_chinensis	RchiOBHm_Chr5g0021061
rosa_laevigata	RLG00000032580
rosa_multiflora	Rmu_ssc0000244.1_g000017
rosa_roxburghii	Rroxscaffold_1G00057400
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug05G0063900 Rorug05G0064000
rosa_samantha	Rh5AG153600 Rh5BG153300 Rh5CG166200 Rh5DG152900
rosa_wichuraiana	Rw5G013650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	868
AccII	CGCG	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	128, 172
AcuI	CTGAAG	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	523
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	910
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	2 cut(s)	37, 171
AjiI	CACGTC	1 cut(s)	765
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	2 cut(s)	338, 922
AluI	AGCT	2 cut(s)	338, 922
Alw26I	GTCTC	4 cut(s)	374, 404, 644, 689
AlwNI	CAGNNNCTG	1 cut(s)	108
AoxI	GGCC	3 cut(s)	555, 729, 948
ApeKI	GCWGC	2 cut(s)	644, 878
ApoI	RAATTY	2 cut(s)	128, 172
AspLEI	GCGC	2 cut(s)	604, 677
AspS9I	GGNCC	4 cut(s)	729, 891, 901, 933
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	4 cut(s)	170, 841, 856, 965
AvaII	GGWCC	3 cut(s)	891, 901, 933
BbsI	GAAGAC	3 cut(s)	353, 473, 536
BbvI	GCAGC	2 cut(s)	631, 865
BccI	CCATC	1 cut(s)	841
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	655
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	4 cut(s)	374, 404, 644, 689
BfaI	CTAG	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	678
BfuI	GTATCC	1 cut(s)	655
BisI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
BlsI	GCNGC	5 cut(s)	151, 361, 646, 880, 930
Bme1390I	CCNGG	2 cut(s)	103, 182
Bme18I	GGWCC	3 cut(s)	891, 901, 933
BmgBI	CACGTC	1 cut(s)	765
BmgT120I	GGNCC	4 cut(s)	729, 891, 901, 933
BmiI	GGNNCC	1 cut(s)	730
BmrFI	CCNGG	2 cut(s)	103, 182
BmsI	GCATC	2 cut(s)	445, 841
BpiI	GAAGAC	3 cut(s)	353, 473, 536
BpmI	CTGGAG	2 cut(s)	85, 223
Bpu10I	CCTNAGC	5 cut(s)	339, 459, 504, 546, 923
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	182
BsaI	GGTCTC	2 cut(s)	374, 644
BsaJI	CCNNGG	6 cut(s)	102, 135, 261, 369, 426, 558
BsaWI	WCCGGW	1 cut(s)	833
BsaXI	ACNNNNNCTCC	4 cut(s)	749, 779, 828, 858
Bsc4I	CCNNNNNNNGG	1 cut(s)	910
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	6 cut(s)	102, 135, 261, 369, 426, 558
BseGI	GGATG	2 cut(s)	856, 862
BseLI	CCNNNNNNNGG	1 cut(s)	910
BseMII	CTCAG	2 cut(s)	94, 573
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	5 cut(s)	170, 314, 389, 392, 752
BseXI	GCAGC	2 cut(s)	631, 865
BseYI	CCCAGC	1 cut(s)	881
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	557, 731, 950
BsiSI	CCGG	3 cut(s)	181, 834, 951
BslFI	GGGAC	3 cut(s)	221, 526, 646
BslI	CCNNNNNNNGG	1 cut(s)	910
BsmAI	GTCTC	4 cut(s)	374, 404, 644, 689
BsmBI	CGTCTC	1 cut(s)	689
BsmFI	GGGAC	3 cut(s)	221, 526, 646
BsnI	GGCC	3 cut(s)	557, 731, 950
Bso31I	GGTCTC	2 cut(s)	374, 644
Bsp143I	GATC	1 cut(s)	787
Bsp19I	CCATGG	2 cut(s)	261, 369
BspANI	GGCC	3 cut(s)	557, 731, 950
BspCNI	CTCAG	2 cut(s)	93, 574
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	730
BspTNI	GGTCTC	2 cut(s)	374, 644
BsrBI	CCGCTC	1 cut(s)	868
BsrFI	RCCGGY	1 cut(s)	950
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	950
BssECI	CCNNGG	6 cut(s)	102, 135, 261, 369, 426, 558
BssMI	GATC	1 cut(s)	787
BssT1I	CCWWGG	4 cut(s)	261, 369, 426, 558
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	6 cut(s)	415, 490, 568, 610, 655, 667
BstC8I	GCNNGC	5 cut(s)	7, 245, 249, 705, 876
BstDEI	CTNAG	8 cut(s)	80, 339, 459, 504, 546, 582, 690, 923
BstDSI	CCRYGG	2 cut(s)	261, 369
BstEII	GGTNACC	1 cut(s)	829
BstF5I	GGATG	2 cut(s)	856, 862
BstFNI	CGCG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	2 cut(s)	604, 677
BstKTI	GATC	1 cut(s)	790
BstMAI	GTCTC	4 cut(s)	374, 404, 644, 689
BstMBI	GATC	1 cut(s)	787
BstMWI	GCNNNNNNNGC	7 cut(s)	335, 455, 500, 533, 542, 683, 928
BstNI	CCWGG	1 cut(s)	103
BstPI	GGTNACC	1 cut(s)	829
BstSCI	CCNGG	2 cut(s)	101, 180
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	631, 865
BstV2I	GAAGAC	3 cut(s)	353, 473, 536
BsuI	GTATCC	1 cut(s)	655
BsuRI	GGCC	3 cut(s)	557, 731, 950
BtgI	CCRYGG	2 cut(s)	261, 369
BtrI	CACGTC	1 cut(s)	765
BtsCI	GGATG	2 cut(s)	856, 862
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	3 cut(s)	420, 672, 753
Cac8I	GCNNGC	5 cut(s)	7, 245, 249, 705, 876
CaiI	CAGNNNCTG	1 cut(s)	108
CfoI	GCGC	2 cut(s)	604, 677
Cfr10I	RCCGGY	1 cut(s)	950
Cfr13I	GGNCC	4 cut(s)	729, 891, 901, 933
CpoI	CGGWCCG	1 cut(s)	933
Csp6I	GTAC	1 cut(s)	223
CspI	CGGWCCG	1 cut(s)	933
CviAII	CATG	3 cut(s)	262, 370, 478
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	8 cut(s)	80, 339, 459, 504, 546, 582, 690, 923
DpnI	GATC	1 cut(s)	789
DpnII	GATC	1 cut(s)	787
DraIII	CACNNNGTG	1 cut(s)	523
EciI	GGCGGA	8 cut(s)	109, 167, 377, 509, 605, 629, 926, 946
Eco130I	CCWWGG	4 cut(s)	261, 369, 426, 558
Eco31I	GGTCTC	2 cut(s)	374, 644
Eco47I	GGWCC	3 cut(s)	891, 901, 933
Eco57I	CTGAAG	1 cut(s)	390
Eco91I	GGTNACC	1 cut(s)	829
EcoO109I	RGGNCCY	1 cut(s)	901
EcoO65I	GGTNACC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	4 cut(s)	261, 369, 426, 558
ErhI	CCWWGG	4 cut(s)	261, 369, 426, 558
Esp3I	CGTCTC	1 cut(s)	689
FaeI	CATG	3 cut(s)	265, 373, 481
FaqI	GGGAC	3 cut(s)	221, 526, 646
FatI	CATG	3 cut(s)	261, 369, 477
FauI	CCCGC	3 cut(s)	282, 529, 867
Fnu4HI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
FokI	GGATG	2 cut(s)	863, 869
Fsp4HI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
FspBI	CTAG	1 cut(s)	275
GlaI	GCGC	2 cut(s)	603, 676
GluI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
GsaI	CCCAGC	1 cut(s)	885
GsuI	CTGGAG	2 cut(s)	85, 223
HaeII	RGCGCY	1 cut(s)	678
HaeIII	GGCC	3 cut(s)	557, 731, 950
HapII	CCGG	3 cut(s)	181, 834, 951
HhaI	GCGC	2 cut(s)	604, 677
Hin1II	CATG	3 cut(s)	265, 373, 481
Hin6I	GCGC	2 cut(s)	602, 675
HinP1I	GCGC	2 cut(s)	602, 675
HinfI	GANTC	4 cut(s)	25, 167, 514, 914
HpaII	CCGG	3 cut(s)	181, 834, 951
HphI	GGTGA	4 cut(s)	170, 841, 856, 965
Hpy188I	TCNGA	7 cut(s)	83, 136, 409, 769, 814, 895, 919
HpyCH4III	ACNGT	6 cut(s)	415, 490, 568, 610, 655, 667
HpyCH4IV	ACGT	2 cut(s)	395, 764
HpyF10VI	GCNNNNNNNGC	7 cut(s)	335, 455, 500, 533, 542, 683, 928
HpyF3I	CTNAG	8 cut(s)	80, 339, 459, 504, 546, 582, 690, 923
HpySE526I	ACGT	2 cut(s)	395, 764
Hsp92II	CATG	3 cut(s)	265, 373, 481
HspAI	GCGC	2 cut(s)	602, 675
Kzo9I	GATC	1 cut(s)	787
LmnI	GCTCC	1 cut(s)	919
Lsp1109I	GCAGC	2 cut(s)	631, 865
LweI	GCATC	2 cut(s)	445, 841
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	2 cut(s)	395, 764
MaeIII	GTNAC	2 cut(s)	829, 953
MalI	GATC	1 cut(s)	789
MbiI	CCGCTC	1 cut(s)	868
MboI	GATC	1 cut(s)	787
MboII	GAAGA	7 cut(s)	25, 34, 278, 358, 478, 541, 830
MluCI	AATT	2 cut(s)	128, 172
MlyI	GAGTC	2 cut(s)	508, 923
MmeI	TCCRAC	1 cut(s)	897
MspI	CCGG	3 cut(s)	181, 834, 951
MspR9I	CCNGG	2 cut(s)	103, 182
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	7 cut(s)	335, 455, 500, 533, 542, 683, 928
NciI	CCSGG	1 cut(s)	182
NcoI	CCATGG	2 cut(s)	261, 369
NdeII	GATC	1 cut(s)	787
NlaIII	CATG	3 cut(s)	265, 373, 481
NlaIV	GGNNCC	1 cut(s)	730
NmuCI	GTSAC	2 cut(s)	829, 953
PfeI	GAWTC	2 cut(s)	25, 167
PkrI	GCNGC	5 cut(s)	151, 361, 646, 880, 930
PleI	GAGTC	2 cut(s)	508, 922
PpsI	GAGTC	2 cut(s)	508, 922
PpuMI	RGGWCCY	1 cut(s)	901
Psp5II	RGGWCCY	1 cut(s)	901
Psp6I	CCWGG	1 cut(s)	101
PspEI	GGTNACC	1 cut(s)	829
PspFI	CCCAGC	1 cut(s)	881
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	730
PspPI	GGNCC	4 cut(s)	729, 891, 901, 933
PspPPI	RGGWCCY	1 cut(s)	901
PstNI	CAGNNNCTG	1 cut(s)	108
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
Rsr2I	CGGWCCG	1 cut(s)	933
RsrII	CGGWCCG	1 cut(s)	933
SatI	GCNGC	5 cut(s)	150, 360, 645, 879, 929
Sau3AI	GATC	1 cut(s)	787
Sau96I	GGNCC	4 cut(s)	729, 891, 901, 933
SchI	GAGTC	2 cut(s)	508, 923
ScrFI	CCNGG	2 cut(s)	103, 182
SfaNI	GCATC	2 cut(s)	445, 841
SinI	GGWCC	3 cut(s)	891, 901, 933
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	128, 172
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	101, 180
StyI	CCWWGG	4 cut(s)	261, 369, 426, 558
TaaI	ACNGT	6 cut(s)	415, 490, 568, 610, 655, 667
TaiI	ACGT	2 cut(s)	398, 767
TaqI	TCGA	3 cut(s)	20, 142, 795
TasI	AATT	2 cut(s)	128, 172
TauI	GCSGC	3 cut(s)	152, 362, 931
TfiI	GAWTC	2 cut(s)	25, 167
TscAI	CASTG	3 cut(s)	420, 672, 753
TseFI	GTSAC	2 cut(s)	829, 953
TseI	GCWGC	2 cut(s)	644, 878
Tsp45I	GTSAC	2 cut(s)	829, 953
TspDTI	ATGAA	3 cut(s)	103, 320, 831
TspRI	CASTG	3 cut(s)	420, 672, 753
VpaK11BI	GGWCC	3 cut(s)	891, 901, 933
XapI	RAATTY	2 cut(s)	128, 172
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.