FvH4_3g12950
ERF Family

Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. Era GTPase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
7732430 .. 7736794
4365 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12950.t1

Sequence Viewer

Length: 1293 bp
ATGAAATCCCTTCTCTCCCTGAGGCTCCTCTCCTCCAAACCCACCACCCCTCTATCCCCACCCCTCCTCCTCCTCCTCCTCCTCCGCCGCTCCTTCTCCGCCCAGCCCCAACACTCCGATCCCACCTCCACCCCTTCCTCCTCCTCAGAATCCGACTCCGAATTCGACTTCAACAGCACCCACTACGACCTACCCACCGCCCTCTCCGATCCCAAACCCCAAACCCGGACCTGGGACAGCAAGTACCGGAGCAAAGCCGATAGGGTGGTCCCTGGAGATGAGGCCCACAAGGCCAAGCTGAGATTTTTGAAGGAGGAGGAGGACGAGAGGAGGCGGAGGGTGCTCGCTAAGGCGCTGCTTGAGGCGGCGCTGGAGAGAGGTGATGAGGAGGAAGACGAGGAGGAGGAGGAGGTTGTGAAGGAGGAGGATCAGAAGTCGGTGACTGTTGGGATTATTGGGGCTCCCAATGCCGGAAAGTCTGCGCTCACTAATTACTTGGTTGGAACAAAGGTTTCTGCTGTTTCGCGGAAGACAAACACAACTACTCATGAAGTGTTAGGAGTTATAACAGAAGGAGACACCCAGATTTGTTTCTTTGATACTCCGGGTCTTTCAATAAACACCCGCGGAATTCCGTACAAGGATTTCAAGGCCCGTGTTGAAAGTACTTGGAGCTCAGTTAATTTATATGATGTCCTCATAGTTATTTTTGACGTCCATAGGCATCTTACCAGACCTGATGTAAGGGTTATAAGAACGATCAAACGCATGGGCATGGAGCCACACCCAACACAAAAGCGAGTTCTATGTATGAACAAGGTTGATTTAGTTGAGAAGAAGAAGGATTTATTAACGGTTGCTGAGCAATTTAAAGATCTTCCTGGGTATGATAGGCATTTCATGATTTCAGGTCTGAAAGGCTATGGAGTTAAAGATCTTACTGAATACTTGATGCTTCAGGCACTTAAAAGACCTTGGGAAGAAGATCCCTTCACCATGAGTGAGGAAGTTTTAAAGAATATATCACTAGAAGTTGTTCGAGAAAAATTGTTAGACCATATGCATCAGGAAATCCCGTATGATATTGATCATCGTTTGATAGACTGGAAGGAGTTACGAGATGGTTCTATTCGGATTGAACAGCATTTCATCACTCACAAACCAAGCCAACGCAAGATTCTTGTAGGAAAGAGAGGCGCCAAAATAGGGAGAATTGGCATAGAAGCCAATGAAGAGCTAAGGTCCATCTTCAAGAGGGATGTGCATCTCTTTCTCCAGGTTAGACTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

431

Amino Acids

49.31

Weight (kDa)

7.27

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 145 - 318 6.5e-07 Elongation factor Tu GTP binding domain
MMR_HSR1 PF01926 148 - 273 6.2e-18 50S ribosome-binding GTPase
FeoB_N PF02421 148 - 283 7.5e-06 Ferrous iron transport protein B
KH_2 PF07650 357 - 426 3.8e-09 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 566, 752
AatII GACGTC 1 cut(s) 717
AccB1I GGYRCC 1 cut(s) 1196
AccBSI CCGCTC 1 cut(s) 90
AccII CGCG 2 cut(s) 526, 627
AciI CCGC 9 cut(s) 85, 88, 99, 198, 334, 365, 526, 625, 627
AclWI GGATC 4 cut(s) 113, 203, 435, 980
AcsI RAATTY 2 cut(s) 161, 630
AcuI CTGAAG 1 cut(s) 941
AcyI GRCGYC 2 cut(s) 714, 1197
AfaI GTAC 3 cut(s) 245, 638, 667
AfiI CCNNNNNNNGG 5 cut(s) 225, 231, 232, 470, 1206
AgsI TTSAA 7 cut(s) 172, 310, 615, 649, 662, 1139, 1252
AjnI CCWGG 4 cut(s) 230, 271, 880, 1275
AjuI GAANNNNNNNTTGG 2 cut(s) 1161, 1193
AluBI AGCT 3 cut(s) 298, 675, 1237
AluI AGCT 3 cut(s) 298, 675, 1237
Alw21I GWGCWC 2 cut(s) 345, 677
Alw26I GTCTC 1 cut(s) 570
AlwI GGATC 4 cut(s) 113, 203, 435, 980
AoxI GGCC 3 cut(s) 282, 291, 651
ApeKI GCWGC 1 cut(s) 355
ApoI RAATTY 2 cut(s) 161, 630
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
Asp700I GAANNNNTTC 1 cut(s) 1035
AspLEI GCGC 4 cut(s) 355, 370, 484, 1199
AspS9I GGNCC 5 cut(s) 228, 268, 283, 652, 1242
AsuC2I CCSGG 2 cut(s) 226, 606
AsuHPI GGTGA 3 cut(s) 392, 451, 985
AvaII GGWCC 3 cut(s) 228, 268, 1242
AxyI CCTNAGG 1 cut(s) 20
BanI GGYRCC 1 cut(s) 1196
BanII GRGCYC 2 cut(s) 463, 677
BbsI GAAGAC 2 cut(s) 399, 536
Bbv12I GWGCWC 2 cut(s) 345, 677
BbvI GCAGC 1 cut(s) 342
BccI CCATC 2 cut(s) 1115, 1253
BciT130I CCWGG 4 cut(s) 232, 273, 882, 1277
BclI TGATCA 1 cut(s) 1087
BcnI CCSGG 2 cut(s) 226, 606
BcoDI GTCTC 1 cut(s) 570
BfaI CTAG 1 cut(s) 1028
BfoI RGCGCY 3 cut(s) 356, 371, 1200
BglI GCCNNNNNGGC 1 cut(s) 290
BglII AGATCT 2 cut(s) 874, 934
BisI GCNGC 3 cut(s) 88, 356, 366
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 3 cut(s) 89, 357, 367
BmcAI AGTACT 1 cut(s) 667
Bme1390I CCNGG 6 cut(s) 226, 232, 273, 606, 882, 1277
Bme18I GGWCC 3 cut(s) 228, 268, 1242
BmgT120I GGNCC 5 cut(s) 228, 268, 283, 652, 1242
BmiI GGNNCC 5 cut(s) 26, 270, 462, 780, 1198
BmrFI CCNGG 6 cut(s) 226, 232, 273, 606, 882, 1277
BmsI GCATC 4 cut(s) 733, 942, 1072, 1273
BpiI GAAGAC 2 cut(s) 399, 536
BpmI CTGGAG 3 cut(s) 294, 392, 1259
Bpu10I CCTNAGC 2 cut(s) 348, 1238
Bpu1102I GCTNAGC 1 cut(s) 861
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 2 cut(s) 226, 606
BsaBI GATNNNNATC 2 cut(s) 1086, 1263
BsaHI GRCGYC 2 cut(s) 714, 1197
BsaJI CCNNGG 5 cut(s) 231, 271, 625, 881, 974
BsaWI WCCGGW 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 5 cut(s) 225, 231, 232, 470, 1206
Bse1I ACTGG 1 cut(s) 1109
Bse21I CCTNAGG 1 cut(s) 20
Bse8I GATNNNNATC 2 cut(s) 1086, 1263
BseBI CCWGG 4 cut(s) 232, 273, 882, 1277
BseDI CCNNGG 5 cut(s) 231, 271, 625, 881, 974
BseGI GGATG 1 cut(s) 1264
BseJI GATNNNNATC 2 cut(s) 1086, 1263
BseLI CCNNNNNNNGG 5 cut(s) 225, 231, 232, 470, 1206
BseMII CTCAG 5 cut(s) 11, 159, 290, 690, 852
BseNI ACTGG 1 cut(s) 1109
BseXI GCAGC 1 cut(s) 342
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 2 cut(s) 526, 627
BshFI GGCC 3 cut(s) 284, 293, 653
BshNI GGYRCC 1 cut(s) 1196
BsiHKAI GWGCWC 2 cut(s) 345, 677
BsiSI CCGG 4 cut(s) 226, 247, 471, 605
BslFI GGGAC 2 cut(s) 248, 254
BslI CCNNNNNNNGG 5 cut(s) 225, 231, 232, 470, 1206
BsmAI GTCTC 1 cut(s) 570
BsmFI GGGAC 2 cut(s) 248, 254
BsnI GGCC 3 cut(s) 284, 293, 653
Bsp1286I GDGCHC 3 cut(s) 345, 463, 677
Bsp143I GATC 8 cut(s) 118, 208, 427, 759, 874, 934, 985, 1087
Bsp1720I GCTNAGC 1 cut(s) 861
BspACI CCGC 9 cut(s) 85, 88, 99, 198, 334, 365, 526, 625, 627
BspANI GGCC 3 cut(s) 284, 293, 653
BspCNI CTCAG 5 cut(s) 12, 158, 291, 689, 853
BspFNI CGCG 2 cut(s) 526, 627
BspHI TCATGA 2 cut(s) 547, 900
BspLI GGNNCC 5 cut(s) 26, 270, 462, 780, 1198
BspPI GGATC 4 cut(s) 113, 203, 435, 980
BspQI GCTCTTC 1 cut(s) 1227
BspT107I GGYRCC 1 cut(s) 1196
BsrBI CCGCTC 1 cut(s) 90
BsrI ACTGG 1 cut(s) 1109
BssECI CCNNGG 5 cut(s) 231, 271, 625, 881, 974
BssMI GATC 8 cut(s) 118, 208, 427, 759, 874, 934, 985, 1087
BssNI GRCGYC 2 cut(s) 714, 1197
BssT1I CCWWGG 1 cut(s) 974
Bst2UI CCWGG 4 cut(s) 232, 273, 882, 1277
Bst4CI ACNGT 2 cut(s) 445, 856
Bst6I CTCTTC 1 cut(s) 1227
BstACI GRCGYC 2 cut(s) 714, 1197
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 7 cut(s) 20, 145, 299, 348, 676, 861, 1238
BstDSI CCRYGG 1 cut(s) 625
BstF5I GGATG 1 cut(s) 1264
BstFNI CGCG 2 cut(s) 526, 627
BstH2I RGCGCY 3 cut(s) 356, 371, 1200
BstHHI GCGC 4 cut(s) 355, 370, 484, 1199
BstKTI GATC 8 cut(s) 121, 211, 430, 762, 877, 937, 988, 1090
BstMAI GTCTC 1 cut(s) 570
BstMBI GATC 8 cut(s) 118, 208, 427, 759, 874, 934, 985, 1087
BstMWI GCNNNNNNNGC 3 cut(s) 290, 340, 467
BstNI CCWGG 4 cut(s) 232, 273, 882, 1277
BstSCI CCNGG 6 cut(s) 224, 230, 271, 604, 880, 1275
BstUI CGCG 2 cut(s) 526, 627
BstV1I GCAGC 1 cut(s) 342
BstV2I GAAGAC 2 cut(s) 399, 536
BstX2I RGATCY 3 cut(s) 874, 934, 985
BstYI RGATCY 3 cut(s) 874, 934, 985
Bsu36I CCTNAGG 1 cut(s) 20
BsuRI GGCC 3 cut(s) 284, 293, 653
BtgI CCRYGG 1 cut(s) 625
BtsCI GGATG 1 cut(s) 1264
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 2 cut(s) 547, 900
CfoI GCGC 4 cut(s) 355, 370, 484, 1199
Cfr13I GGNCC 5 cut(s) 228, 268, 283, 652, 1242
Cfr42I CCGCGG 1 cut(s) 628
Csp6I GTAC 3 cut(s) 244, 637, 666
CviAII CATG 5 cut(s) 548, 769, 775, 901, 997
CviQI GTAC 3 cut(s) 244, 637, 666
DdeI CTNAG 7 cut(s) 20, 145, 299, 348, 676, 861, 1238
DinI GGCGCC 1 cut(s) 1198
DpnI GATC 8 cut(s) 120, 210, 429, 761, 876, 936, 987, 1089
DpnII GATC 8 cut(s) 118, 208, 427, 759, 874, 934, 985, 1087
DraI TTTAAA 2 cut(s) 871, 1014
Eam1104I CTCTTC 1 cut(s) 1227
EarI CTCTTC 1 cut(s) 1227
EciI GGCGGA 3 cut(s) 74, 88, 349
Ecl136II GAGCTC 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 974
Eco24I GRGCYC 2 cut(s) 463, 677
Eco47I GGWCC 3 cut(s) 228, 268, 1242
Eco53kI GAGCTC 1 cut(s) 675
Eco57I CTGAAG 1 cut(s) 941
Eco81I CCTNAGG 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 675
EcoRI GAATTC 2 cut(s) 161, 630
EcoRII CCWGG 4 cut(s) 230, 271, 880, 1275
EcoT14I CCWWGG 1 cut(s) 974
EcoT22I ATGCAT 1 cut(s) 1065
EcoT38I GRGCYC 2 cut(s) 463, 677
EgeI GGCGCC 1 cut(s) 1198
EheI GGCGCC 1 cut(s) 1198
ErhI CCWWGG 1 cut(s) 974
FaeI CATG 5 cut(s) 551, 772, 778, 904, 1000
FaqI GGGAC 2 cut(s) 248, 254
FatI CATG 5 cut(s) 547, 768, 774, 900, 996
FauI CCCGC 1 cut(s) 632
FauNDI CATATG 1 cut(s) 1059
FbaI TGATCA 1 cut(s) 1087
Fnu4HI GCNGC 3 cut(s) 88, 356, 366
FokI GGATG 1 cut(s) 1271
FriOI GRGCYC 2 cut(s) 463, 677
Fsp4HI GCNGC 3 cut(s) 88, 356, 366
FspBI CTAG 1 cut(s) 1028
GlaI GCGC 4 cut(s) 354, 369, 483, 1198
GluI GCNGC 3 cut(s) 88, 356, 366
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 3 cut(s) 294, 392, 1259
HaeII RGCGCY 3 cut(s) 356, 371, 1200
HaeIII GGCC 3 cut(s) 284, 293, 653
HapII CCGG 4 cut(s) 226, 247, 471, 605
HhaI GCGC 4 cut(s) 355, 370, 484, 1199
Hin1I GRCGYC 2 cut(s) 714, 1197
Hin1II CATG 5 cut(s) 551, 772, 778, 904, 1000
Hin6I GCGC 4 cut(s) 353, 368, 482, 1197
HinP1I GCGC 4 cut(s) 353, 368, 482, 1197
HinfI GANTC 3 cut(s) 149, 155, 1177
HpaII CCGG 4 cut(s) 226, 247, 471, 605
HphI GGTGA 3 cut(s) 392, 451, 985
Hpy188I TCNGA 8 cut(s) 118, 148, 154, 160, 208, 432, 915, 1134
Hpy188III TCNNGA 5 cut(s) 548, 901, 1040, 1067, 1252
HpyAV CCTTC 9 cut(s) 20, 103, 144, 304, 412, 566, 835, 1000, 1102
HpyCH4III ACNGT 2 cut(s) 445, 856
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 2 cut(s) 1063, 1264
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 340, 467
HpyF3I CTNAG 7 cut(s) 20, 145, 299, 348, 676, 861, 1238
HpySE526I ACGT 1 cut(s) 714
Hsp92I GRCGYC 2 cut(s) 714, 1197
Hsp92II CATG 5 cut(s) 551, 772, 778, 904, 1000
HspAI GCGC 4 cut(s) 353, 368, 482, 1197
KasI GGCGCC 1 cut(s) 1196
Ksp22I TGATCA 1 cut(s) 1087
KspI CCGCGG 1 cut(s) 628
Kzo9I GATC 8 cut(s) 118, 208, 427, 759, 874, 934, 985, 1087
LguI GCTCTTC 1 cut(s) 1227
LmnI GCTCC 6 cut(s) 30, 95, 249, 466, 672, 778
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 4 cut(s) 733, 942, 1072, 1273
MaeI CTAG 1 cut(s) 1028
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 2 cut(s) 439, 1113
MalI GATC 8 cut(s) 120, 210, 429, 761, 876, 936, 987, 1089
MbiI CCGCTC 1 cut(s) 90
MboI GATC 8 cut(s) 118, 208, 427, 759, 874, 934, 985, 1087
MboII GAAGA 9 cut(s) 404, 541, 847, 850, 869, 992, 995, 1240, 1244
MflI RGATCY 3 cut(s) 874, 934, 985
MhlI GDGCHC 3 cut(s) 345, 463, 677
MluCI AATT 7 cut(s) 161, 490, 630, 682, 866, 1046, 1212
Mly113I GGCGCC 1 cut(s) 1197
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 177, 481
Mph1103I ATGCAT 1 cut(s) 1065
MroXI GAANNNNTTC 1 cut(s) 1035
MseI TTAA 7 cut(s) 681, 851, 870, 930, 966, 1013, 1287
MslI CAYNNNNRTG 1 cut(s) 773
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 4 cut(s) 226, 247, 471, 605
MspR9I CCNGG 6 cut(s) 226, 232, 273, 606, 882, 1277
MvaI CCWGG 4 cut(s) 232, 273, 882, 1277
MvnI CGCG 2 cut(s) 526, 627
MwoI GCNNNNNNNGC 3 cut(s) 290, 340, 467
NarI GGCGCC 1 cut(s) 1197
NciI CCSGG 2 cut(s) 226, 606
NdeI CATATG 1 cut(s) 1059
NdeII GATC 8 cut(s) 118, 208, 427, 759, 874, 934, 985, 1087
NlaIII CATG 5 cut(s) 551, 772, 778, 904, 1000
NlaIV GGNNCC 5 cut(s) 26, 270, 462, 780, 1198
NmuCI GTSAC 1 cut(s) 439
NsiI ATGCAT 1 cut(s) 1065
PagI TCATGA 2 cut(s) 547, 900
PciSI GCTCTTC 1 cut(s) 1227
PdmI GAANNNNTTC 1 cut(s) 1035
PfeI GAWTC 2 cut(s) 149, 1177
PkrI GCNGC 3 cut(s) 89, 357, 367
PleI GAGTC 1 cut(s) 149
PluTI GGCGCC 1 cut(s) 1200
PpsI GAGTC 1 cut(s) 149
PsiI TTATAA 2 cut(s) 566, 752
Psp124BI GAGCTC 1 cut(s) 677
Psp6I CCWGG 4 cut(s) 230, 271, 880, 1275
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 4 cut(s) 230, 271, 880, 1275
PspN4I GGNNCC 5 cut(s) 26, 270, 462, 780, 1198
PspPI GGNCC 5 cut(s) 228, 268, 283, 652, 1242
PsuI RGATCY 3 cut(s) 874, 934, 985
RsaI GTAC 3 cut(s) 245, 638, 667
RsaNI GTAC 3 cut(s) 244, 637, 666
RseI CAYNNNNRTG 1 cut(s) 773
SacI GAGCTC 1 cut(s) 677
SacII CCGCGG 1 cut(s) 628
SapI GCTCTTC 1 cut(s) 1227
SaqAI TTAA 7 cut(s) 681, 851, 870, 930, 966, 1013, 1287
SatI GCNGC 3 cut(s) 88, 356, 366
Sau3AI GATC 8 cut(s) 118, 208, 427, 759, 874, 934, 985, 1087
Sau96I GGNCC 5 cut(s) 228, 268, 283, 652, 1242
ScaI AGTACT 1 cut(s) 667
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 6 cut(s) 226, 232, 273, 606, 882, 1277
SduI GDGCHC 3 cut(s) 345, 463, 677
SfaNI GCATC 4 cut(s) 733, 942, 1072, 1273
SfiI GGCCNNNNNGGCC 1 cut(s) 290
SfoI GGCGCC 1 cut(s) 1198
Sfr303I CCGCGG 1 cut(s) 628
SgrBI CCGCGG 1 cut(s) 628
SinI GGWCC 3 cut(s) 228, 268, 1242
SmiMI CAYNNNNRTG 1 cut(s) 773
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 7 cut(s) 161, 490, 630, 682, 866, 1046, 1212
SsiI CCGC 9 cut(s) 85, 88, 99, 198, 334, 365, 526, 625, 627
SspDI GGCGCC 1 cut(s) 1196
SspMI CTAG 1 cut(s) 1028
SstI GAGCTC 1 cut(s) 677
StyD4I CCNGG 6 cut(s) 224, 230, 271, 604, 880, 1275
StyI CCWWGG 1 cut(s) 974
TaaI ACNGT 2 cut(s) 445, 856
TaiI ACGT 1 cut(s) 717
TaqI TCGA 2 cut(s) 165, 1039
TasI AATT 7 cut(s) 161, 490, 630, 682, 866, 1046, 1212
TatI WGTACW 1 cut(s) 665
TauI GCSGC 2 cut(s) 90, 368
TfiI GAWTC 2 cut(s) 149, 1177
Tru1I TTAA 7 cut(s) 681, 851, 870, 930, 966, 1013, 1287
Tru9I TTAA 7 cut(s) 681, 851, 870, 930, 966, 1013, 1287
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 6 cut(s) 17, 564, 827, 889, 1138, 1245
TspGWI ACGGA 1 cut(s) 624
VpaK11BI GGWCC 3 cut(s) 228, 268, 1242
XapI RAATTY 2 cut(s) 161, 630
XmnI GAANNNNTTC 1 cut(s) 1035
XspI CTAG 1 cut(s) 1028
ZraI GACGTC 1 cut(s) 715
ZrmI AGTACT 1 cut(s) 667
Zsp2I ATGCAT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.