Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008713

Physical Location & Seq

Genomic Coordinates Forward (+)

15532218 .. 15536051

Gene Structure 3834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG152900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAAATCTTTGAGAGCCCTGAGGCTCCTCTCTTCCAAACCCACCAACACCACTCCATCCCCAACCTTCCTCCTCCTCCGCTTCTACGCCGCCCAACCCCAACAATCCGATCCCACCCACACCCCATCCTCCTCAGAATCCGACGCCGAAAACAGCTTCGACAGTACCCACTACGACTTACCCACCACCGCTTCGGCTTCCAAACCCCAAAACCCGAGTTGGGACGACAAGTACAGAAGCAAAGCCGATAGATTGGTACCCGGGGATGAGGCCCACAAAGCAAAGCTGAGGTTTTTGAAGGAGGAGGAGGACGAGAGGAAGCGGAGGCTGCTCGCTAAGGCGCTGCTTGAGGCGGCGCTGGAGAGGGGAGATGAGGAGAAATCGGACGGTGAGGAGGAGCTGGTCAAGGAGGAGGACCAGAAGTCGTTGACGGTTGGGATTATTGGGGCTCCCAATGCCGGAAAGTCTGCGCTGACGAATTACATGGTTGGAACAAAGGTTTCTGCTGTCTCACGGAAGACAAACACAACTACTCATGAAGTGTTAGGAGTTATAACTGAAGGAGACACCCAAATTTGTTTCTTTGATACGCCAGGTCTTTCAATAAACACCCGTGGAATTCCGTACAAGGATTTCAAGGTTCGTGTTGAAAGTGCTTGGAGCTCAGTTAATTTATATGATGTCCTCATAGTTATTTTTGACGTCCATAGGCATCTTACCAGACCTGATGTAAGGGTTATAAAAACAATCAAACGCATGGGAATGGAGCCACACCCAACACAAAAGCGAGTTTTATGTATGAACAAGGTTGATTTAGTTGAGAAGAAGAAAGACTTGTTAACGGTTGCCGAGCAATTTAAAGATCTACCCGGGTATGAAAGGCATTTCATGATTTCAGGTCTGAAGGGCTTTGGAGTTAAAGATCTTACTGAATACTTGATGCTTCAGGCACTTAAAAGACCTTGGGAAGAAGATCCCTTCACCATGAGCGAGGAAGTTTTGAAGAATATATCACTAGAAGTTGTCCGAGAAAAGTTGTTAGACCATATACATCAGGAAATCCCATATGATATTGATCATCGTTTGATAGACTGGAAGGAGTTGCGAGATGGTTCTATTCGGATTGAACAGCATTTCATCACTCACAAACCAAGCCAGCGCAAGATTCTTGTAGGAAAGAGGGGGTCTAAAATAGGGAGAATCGGCATGGAAGCCAATGAAGAGCTAAGATCCATCTTCAAGAGGGATGTGCATCTCTTTCTCCTGGTTAGACTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

426

Amino Acids

48.72

Weight (kDa)

8.53

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	142 - 314	1.4e-06	Elongation factor Tu GTP binding domain
MMR_HSR1	PF01926	144 - 269	1.2e-17	50S ribosome-binding GTPase
KH_2	PF07650	353 - 421	2.6e-09	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30960
fragaria_vesca	FvH4_3g12950 FvH4_3g12950
malus_domestica	MD05G1246900.v1.1 MD10G1227500.v1.1
prunus_persica	Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1
pyrus_communis	pycom05g22280 pycom10g19100
rosa_chinensis	RchiOBHm_Chr5g0021061
rosa_laevigata	RLG00000032580
rosa_multiflora	Rmu_ssc0000244.1_g000017
rosa_roxburghii	Rroxscaffold_1G00057400
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug05G0063900 Rorug05G0064000
rosa_samantha	Rh5AG153600 Rh5BG153300 Rh5CG166200 Rh5DG152900
rosa_wichuraiana	Rw5G013650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	554, 740
AatII	GACGTC	1 cut(s)	705
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	256
AciI	CCGC	5 cut(s)	79, 90, 189, 322, 353
AclWI	GGATC	3 cut(s)	104, 968, 1224
AcsI	RAATTY	2 cut(s)	573, 618
AcuI	CTGAAG	3 cut(s)	579, 923, 929
AcyI	GRCGYC	2 cut(s)	144, 702
AfaI	GTAC	4 cut(s)	166, 233, 258, 626
AfiI	CCNNNNNNNGG	2 cut(s)	220, 458
AgsI	TTSAA	7 cut(s)	298, 603, 637, 650, 1003, 1127, 1240
AhdI	GACNNNNNGTC	1 cut(s)	421
AjnI	CCWGG	2 cut(s)	592, 1263
AluBI	AGCT	5 cut(s)	156, 286, 400, 663, 1225
AluI	AGCT	5 cut(s)	156, 286, 400, 663, 1225
Alw21I	GWGCWC	1 cut(s)	665
Alw26I	GTCTC	2 cut(s)	514, 558
AlwI	GGATC	3 cut(s)	104, 968, 1224
Ama87I	CYCGRG	3 cut(s)	214, 260, 869
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	2 cut(s)	328, 343
ApoI	RAATTY	2 cut(s)	573, 618
Asp718I	GGTACC	1 cut(s)	256
AspLEI	GCGC	4 cut(s)	343, 358, 472, 1161
AspS9I	GGNCC	2 cut(s)	271, 415
AsuC2I	CCSGG	4 cut(s)	261, 262, 870, 871
AsuHPI	GGTGA	2 cut(s)	401, 973
AvaI	CYCGRG	3 cut(s)	214, 260, 869
AvaII	GGWCC	1 cut(s)	415
AxyI	CCTNAGG	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	256
BanII	GRGCYC	3 cut(s)	19, 451, 665
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	665
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	315, 330
BccI	CCATC	4 cut(s)	64, 133, 1103, 1241
BciT130I	CCWGG	2 cut(s)	594, 1265
BclI	TGATCA	1 cut(s)	1075
BcnI	CCSGG	4 cut(s)	261, 262, 870, 871
BcoDI	GTCTC	2 cut(s)	514, 558
BfaI	CTAG	1 cut(s)	1016
BfoI	RGCGCY	2 cut(s)	344, 359
BglII	AGATCT	2 cut(s)	862, 922
BisI	GCNGC	4 cut(s)	90, 329, 344, 354
BlsI	GCNGC	4 cut(s)	91, 330, 345, 355
Bme1390I	CCNGG	6 cut(s)	261, 262, 594, 870, 871, 1265
Bme18I	GGWCC	1 cut(s)	415
BmeRI	GACNNNNNGTC	1 cut(s)	421
BmeT110I	CYCGRG	3 cut(s)	214, 260, 869
BmgT120I	GGNCC	2 cut(s)	271, 415
BmiI	GGNNCC	4 cut(s)	26, 258, 450, 768
BmrFI	CCNGG	6 cut(s)	261, 262, 594, 870, 871, 1265
BmsI	GCATC	3 cut(s)	721, 930, 1261
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	380
Bpu10I	CCTNAGC	2 cut(s)	287, 336
BpuEI	CTTGAG	1 cut(s)	368
BpuMI	CCSGG	4 cut(s)	261, 262, 870, 871
BsaBI	GATNNNNATC	2 cut(s)	1074, 1251
BsaHI	GRCGYC	2 cut(s)	144, 702
BsaJI	CCNNGG	5 cut(s)	260, 261, 613, 869, 962
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 458
Bse1I	ACTGG	1 cut(s)	1097
Bse21I	CCTNAGG	1 cut(s)	20
Bse8I	GATNNNNATC	2 cut(s)	1074, 1251
BseBI	CCWGG	2 cut(s)	594, 1265
BseDI	CCNNGG	5 cut(s)	260, 261, 613, 869, 962
BseGI	GGATG	4 cut(s)	56, 125, 271, 1252
BseJI	GATNNNNATC	2 cut(s)	1074, 1251
BseLI	CCNNNNNNNGG	2 cut(s)	220, 458
BseMII	CTCAG	4 cut(s)	11, 147, 278, 678
BseNI	ACTGG	1 cut(s)	1097
BseXI	GCAGC	2 cut(s)	315, 330
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	665
BsiHKCI	CYCGRG	3 cut(s)	214, 260, 869
BsiSI	CCGG	3 cut(s)	261, 459, 870
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	220, 458
BsmAI	GTCTC	2 cut(s)	514, 558
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	272
BsoBI	CYCGRG	3 cut(s)	214, 260, 869
Bsp1286I	GDGCHC	3 cut(s)	19, 451, 665
Bsp143I	GATC	6 cut(s)	109, 862, 922, 973, 1075, 1229
BspACI	CCGC	5 cut(s)	79, 90, 189, 322, 353
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	4 cut(s)	12, 146, 279, 677
BspHI	TCATGA	2 cut(s)	535, 888
BspLI	GGNNCC	4 cut(s)	26, 258, 450, 768
BspPI	GGATC	3 cut(s)	104, 968, 1224
BspQI	GCTCTTC	1 cut(s)	1215
BspT107I	GGYRCC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	1097
BssECI	CCNNGG	5 cut(s)	260, 261, 613, 869, 962
BssMI	GATC	6 cut(s)	109, 862, 922, 973, 1075, 1229
BssNI	GRCGYC	2 cut(s)	144, 702
BssT1I	CCWWGG	1 cut(s)	962
Bst2UI	CCWGG	2 cut(s)	594, 1265
Bst4CI	ACNGT	4 cut(s)	164, 389, 433, 844
Bst6I	CTCTTC	2 cut(s)	37, 1215
BstACI	GRCGYC	2 cut(s)	144, 702
BstC8I	GCNNGC	2 cut(s)	333, 1157
BstDEI	CTNAG	6 cut(s)	20, 133, 287, 336, 664, 1226
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	4 cut(s)	56, 125, 271, 1252
BstH2I	RGCGCY	2 cut(s)	344, 359
BstHHI	GCGC	4 cut(s)	343, 358, 472, 1161
BstKTI	GATC	6 cut(s)	112, 865, 925, 976, 1078, 1232
BstMAI	GTCTC	2 cut(s)	514, 558
BstMBI	GATC	6 cut(s)	109, 862, 922, 973, 1075, 1229
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 328, 455
BstNI	CCWGG	2 cut(s)	594, 1265
BstSCI	CCNGG	6 cut(s)	259, 260, 592, 868, 869, 1263
BstV1I	GCAGC	2 cut(s)	315, 330
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	4 cut(s)	862, 922, 973, 1229
BstYI	RGATCY	4 cut(s)	862, 922, 973, 1229
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	4 cut(s)	56, 125, 271, 1252
Cac8I	GCNNGC	2 cut(s)	333, 1157
CciI	TCATGA	2 cut(s)	535, 888
CfoI	GCGC	4 cut(s)	343, 358, 472, 1161
Cfr13I	GGNCC	2 cut(s)	271, 415
Cfr9I	CCCGGG	2 cut(s)	260, 869
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	165, 232, 257, 625
CviAII	CATG	6 cut(s)	484, 536, 757, 889, 985, 1207
CviQI	GTAC	4 cut(s)	165, 232, 257, 625
DdeI	CTNAG	6 cut(s)	20, 133, 287, 336, 664, 1226
DpnI	GATC	6 cut(s)	111, 864, 924, 975, 1077, 1231
DpnII	GATC	6 cut(s)	109, 862, 922, 973, 1075, 1229
DraI	TTTAAA	1 cut(s)	859
DriI	GACNNNNNGTC	1 cut(s)	421
Eam1104I	CTCTTC	2 cut(s)	37, 1215
Eam1105I	GACNNNNNGTC	1 cut(s)	421
EarI	CTCTTC	2 cut(s)	37, 1215
Ecl136II	GAGCTC	1 cut(s)	663
Eco130I	CCWWGG	1 cut(s)	962
Eco24I	GRGCYC	3 cut(s)	19, 451, 665
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	663
Eco57I	CTGAAG	3 cut(s)	579, 923, 929
Eco81I	CCTNAGG	1 cut(s)	20
Eco88I	CYCGRG	3 cut(s)	214, 260, 869
EcoICRI	GAGCTC	1 cut(s)	663
EcoRI	GAATTC	1 cut(s)	618
EcoRII	CCWGG	2 cut(s)	592, 1263
EcoT14I	CCWWGG	1 cut(s)	962
EcoT38I	GRGCYC	3 cut(s)	19, 451, 665
ErhI	CCWWGG	1 cut(s)	962
FaeI	CATG	6 cut(s)	487, 539, 760, 892, 988, 1210
FalI	AAGNNNNNCTT	2 cut(s)	818, 850
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	6 cut(s)	483, 535, 756, 888, 984, 1206
FauNDI	CATATG	1 cut(s)	1066
FbaI	TGATCA	1 cut(s)	1075
Fnu4HI	GCNGC	4 cut(s)	90, 329, 344, 354
FokI	GGATG	4 cut(s)	43, 112, 278, 1259
FriOI	GRGCYC	3 cut(s)	19, 451, 665
Fsp4HI	GCNGC	4 cut(s)	90, 329, 344, 354
FspBI	CTAG	1 cut(s)	1016
GlaI	GCGC	4 cut(s)	342, 357, 471, 1160
GluI	GCNGC	4 cut(s)	90, 329, 344, 354
GsuI	CTGGAG	1 cut(s)	380
HaeII	RGCGCY	2 cut(s)	344, 359
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	3 cut(s)	261, 459, 870
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	4 cut(s)	343, 358, 472, 1161
Hin1I	GRCGYC	2 cut(s)	144, 702
Hin1II	CATG	6 cut(s)	487, 539, 760, 892, 988, 1210
Hin6I	GCGC	4 cut(s)	341, 356, 470, 1159
HinP1I	GCGC	4 cut(s)	341, 356, 470, 1159
HincII	GTYRAC	2 cut(s)	429, 840
HindII	GTYRAC	2 cut(s)	429, 840
HinfI	GANTC	3 cut(s)	137, 1165, 1200
HpaI	GTTAAC	1 cut(s)	840
HpaII	CCGG	3 cut(s)	261, 459, 870
HphI	GGTGA	2 cut(s)	401, 973
Hpy166II	GTNNAC	2 cut(s)	429, 840
Hpy188I	TCNGA	7 cut(s)	109, 136, 142, 385, 903, 1028, 1122
Hpy188III	TCNNGA	4 cut(s)	536, 889, 1055, 1240
Hpy8I	GTNNAC	2 cut(s)	429, 840
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	6 cut(s)	76, 292, 554, 898, 988, 1090
HpyCH4III	ACNGT	4 cut(s)	164, 389, 433, 844
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	1 cut(s)	1252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 328, 455
HpyF3I	CTNAG	6 cut(s)	20, 133, 287, 336, 664, 1226
HpySE526I	ACGT	1 cut(s)	702
Hsp92I	GRCGYC	2 cut(s)	144, 702
Hsp92II	CATG	6 cut(s)	487, 539, 760, 892, 988, 1210
HspAI	GCGC	4 cut(s)	341, 356, 470, 1159
KpnI	GGTACC	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	1075
KspAI	GTTAAC	1 cut(s)	840
Kzo9I	GATC	6 cut(s)	109, 862, 922, 973, 1075, 1229
LguI	GCTCTTC	1 cut(s)	1215
LmnI	GCTCC	5 cut(s)	30, 397, 454, 660, 766
Lsp1109I	GCAGC	2 cut(s)	315, 330
LweI	GCATC	3 cut(s)	721, 930, 1261
MaeI	CTAG	1 cut(s)	1016
MaeII	ACGT	1 cut(s)	702
MalI	GATC	6 cut(s)	111, 864, 924, 975, 1077, 1231
MboI	GATC	6 cut(s)	109, 862, 922, 973, 1075, 1229
MboII	GAAGA	9 cut(s)	24, 529, 835, 838, 980, 983, 1015, 1228, 1232
MflI	RGATCY	4 cut(s)	862, 922, 973, 1229
MhlI	GDGCHC	3 cut(s)	19, 451, 665
MluCI	AATT	5 cut(s)	478, 573, 618, 670, 854
MmeI	TCCRAC	2 cut(s)	165, 469
MseI	TTAA	6 cut(s)	669, 839, 858, 918, 954, 1275
MslI	CAYNNNNRTG	1 cut(s)	761
MspI	CCGG	3 cut(s)	261, 459, 870
MspR9I	CCNGG	6 cut(s)	261, 262, 594, 870, 871, 1265
MvaI	CCWGG	2 cut(s)	594, 1265
MwoI	GCNNNNNNNGC	3 cut(s)	278, 328, 455
NciI	CCSGG	4 cut(s)	261, 262, 870, 871
NdeI	CATATG	1 cut(s)	1066
NdeII	GATC	6 cut(s)	109, 862, 922, 973, 1075, 1229
NlaIII	CATG	6 cut(s)	487, 539, 760, 892, 988, 1210
NlaIV	GGNNCC	4 cut(s)	26, 258, 450, 768
NmeAIII	GCCGAG	1 cut(s)	874
PagI	TCATGA	2 cut(s)	535, 888
PciSI	GCTCTTC	1 cut(s)	1215
PfeI	GAWTC	3 cut(s)	137, 1165, 1200
PkrI	GCNGC	4 cut(s)	91, 330, 345, 355
PsiI	TTATAA	2 cut(s)	554, 740
Psp124BI	GAGCTC	1 cut(s)	665
Psp6I	CCWGG	2 cut(s)	592, 1263
PspGI	CCWGG	2 cut(s)	592, 1263
PspN4I	GGNNCC	4 cut(s)	26, 258, 450, 768
PspPI	GGNCC	2 cut(s)	271, 415
PsuI	RGATCY	4 cut(s)	862, 922, 973, 1229
RsaI	GTAC	4 cut(s)	166, 233, 258, 626
RsaNI	GTAC	4 cut(s)	165, 232, 257, 625
RseI	CAYNNNNRTG	1 cut(s)	761
SacI	GAGCTC	1 cut(s)	665
SapI	GCTCTTC	1 cut(s)	1215
SaqAI	TTAA	6 cut(s)	669, 839, 858, 918, 954, 1275
SatI	GCNGC	4 cut(s)	90, 329, 344, 354
Sau3AI	GATC	6 cut(s)	109, 862, 922, 973, 1075, 1229
Sau96I	GGNCC	2 cut(s)	271, 415
ScrFI	CCNGG	6 cut(s)	261, 262, 594, 870, 871, 1265
SduI	GDGCHC	3 cut(s)	19, 451, 665
SfaNI	GCATC	3 cut(s)	721, 930, 1261
SinI	GGWCC	1 cut(s)	415
SmaI	CCCGGG	2 cut(s)	262, 871
SmiMI	CAYNNNNRTG	1 cut(s)	761
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	5 cut(s)	478, 573, 618, 670, 854
SsiI	CCGC	5 cut(s)	79, 90, 189, 322, 353
SspMI	CTAG	1 cut(s)	1016
SstI	GAGCTC	1 cut(s)	665
StyD4I	CCNGG	6 cut(s)	259, 260, 592, 868, 869, 1263
StyI	CCWWGG	1 cut(s)	962
TaaI	ACNGT	4 cut(s)	164, 389, 433, 844
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	1 cut(s)	159
TasI	AATT	5 cut(s)	478, 573, 618, 670, 854
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	2 cut(s)	92, 356
TfiI	GAWTC	3 cut(s)	137, 1165, 1200
Tru1I	TTAA	6 cut(s)	669, 839, 858, 918, 954, 1275
Tru9I	TTAA	6 cut(s)	669, 839, 858, 918, 954, 1275
TseI	GCWGC	2 cut(s)	328, 343
TspDTI	ATGAA	7 cut(s)	17, 552, 815, 877, 891, 1126, 1233
TspGWI	ACGGA	2 cut(s)	529, 612
TspMI	CCCGGG	2 cut(s)	260, 869
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	2 cut(s)	573, 618
XmaI	CCCGGG	2 cut(s)	260, 869
XspI	CTAG	1 cut(s)	1016
ZraI	GACGTC	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.