Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008713

Physical Location & Seq

Genomic Coordinates Reverse (-)

22272721 .. 22276245

Gene Structure 3525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g19100.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGAAAGCTCTGAGAGTTCTGAGAACCCTCTCTTCAAAACCCAGCAAAACCCCATTAAACCCAGCCTCCTTGTTCCACCGGTTCTACGCAGCTCAGCCGCAACAGGACGACTCCGGTCACAACCCATCTTTCTCAGACCCCGAAAATGGTTCAGACTCGGTTTTTGACAGTACCCATTACGCCATTCCATCCGTTGGTTCGGATTCCAAACACAAACCTCCTCAGAAACCGACTTGGGACAACAAGTACAGATCAAAAGCTAATAAATTGATTGGGGTGGACACCCAGAAGGAGAAATTGAAGCGTTTGGAGGAAGAGGAGGAGCAAAAGAGTAGAGTGCTCGCTAAGGTGCTTCTCGAGGCGGCATTGGAGCGCGCAGATGATGAGGAATCAGGGGATGAGAAGGAAATGGTGAAGGAGGAGGACCAAAAGGCGCTGTCTGTAGGGATAATTGGTGCTCCGAATGCCGGAAAGTCTGCTCTGACTAATTATATGGTTGGGACGAAGGTTTCCGCTGTTTCACGGAAGACAAACACCACAACTCATGAAGTATTAGGAGTTATGACAAAAGGAGACACACAAATTTGTTTCTTTGATACTCCAGGTCTTACATTAAGCAACAAGGGATGTCCTTACAAGGATTTCAAGGTTCGCGTAGAAAGTGCTTGGAGTTCAGTTACTTTATACGATGTGCTCATAGTTATATTTGACGTCCATAGGCATCTTACCAGGCCTGATGTAAGGGTTATAGGATTGATCAAGCGTATGGGAGCACTACCACACCCAGTACAAAAGCGAATTTTATGTATGAACAAGGTTGATTTAGTTGAGAAGAAGAAAGACTTGTTAAAGGTTGCTGAGGAATTCAACGATCTTCCTGGTTATGAAAGGCGTTTCATGATTTCTGGTCTGAAGGGCTCTGGAGTGAAAGATCTTACTCAATATTTGATCGATCAGGCCATTAAACGGTCTTGGGATGAAGATCCATTCATCATGACTGAGGAAGTTATGAAGAATATATCATTAGAAGTTGTCCGAGAAAGGTTGTTAGACCATGTGCATCAGGAAATCCCATACACTATTGAACATCGGTTGATGGACTGGAAGGAGTTGCGAGATGGCTCTCTTCGGATTGAACAACATCTTATCACGAACAAATTAAGTCAACGCAAGATTCTTGTAGGAAAGAAGGGCAATAAAATAGGGAGAATTGGCATGGAAGCTAATGAGGAGCTACGGTCCATCTTCAAGAGGGATGTCCATCTCATTCTCCAGGTTAGACTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

430

Amino Acids

48.8

Weight (kDa)

9.06

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30960
fragaria_vesca	FvH4_3g12950 FvH4_3g12950
malus_domestica	MD05G1246900.v1.1 MD10G1227500.v1.1
prunus_persica	Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1
pyrus_communis	pycom05g22280 pycom10g19100
rosa_chinensis	RchiOBHm_Chr5g0021061
rosa_laevigata	RLG00000032580
rosa_multiflora	Rmu_ssc0000244.1_g000017
rosa_roxburghii	Rroxscaffold_1G00057400
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug05G0063900 Rorug05G0064000
rosa_samantha	Rh5AG153600 Rh5BG153300 Rh5CG166200 Rh5DG152900
rosa_wichuraiana	Rw5G013650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	714
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccII	CGCG	2 cut(s)	375, 654
AciI	CCGC	3 cut(s)	98, 362, 513
AclWI	GGATC	1 cut(s)	977
AcsI	RAATTY	3 cut(s)	582, 798, 863
AcuI	CTGAAG	1 cut(s)	932
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	3 cut(s)	172, 248, 789
AfiI	CCNNNNNNNGG	4 cut(s)	146, 194, 467, 966
AgeI	ACCGGT	1 cut(s)	78
AgsI	TTSAA	7 cut(s)	36, 301, 646, 868, 1085, 1136, 1249
AjnI	CCWGG	4 cut(s)	601, 728, 877, 1272
AluBI	AGCT	5 cut(s)	8, 92, 260, 1223, 1234
AluI	AGCT	5 cut(s)	8, 92, 260, 1223, 1234
Alw21I	GWGCWC	4 cut(s)	342, 460, 696, 775
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	977
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	731, 957
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	3 cut(s)	582, 798, 863
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AsiGI	ACCGGT	1 cut(s)	78
AspLEI	GCGC	3 cut(s)	375, 377, 436
AspS9I	GGNCC	2 cut(s)	424, 1239
AsuHPI	GGTGA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	424, 1239
BanII	GRGCYC	1 cut(s)	920
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	4 cut(s)	342, 460, 696, 775
BbvCI	CCTCAGC	1 cut(s)	858
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	6 cut(s)	133, 196, 1090, 1112, 1250, 1269
BciT130I	CCWGG	4 cut(s)	603, 730, 879, 1274
BclI	TGATCA	1 cut(s)	756
BcoDI	GTCTC	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	437
BglII	AGATCT	1 cut(s)	931
BisI	GCNGC	3 cut(s)	90, 98, 363
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	3 cut(s)	91, 99, 364
Bme1390I	CCNGG	4 cut(s)	603, 730, 879, 1274
Bme18I	GGWCC	2 cut(s)	424, 1239
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	424, 1239
BmrFI	CCNGG	4 cut(s)	603, 730, 879, 1274
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	2 cut(s)	730, 1069
BmuI	ACTGGG	1 cut(s)	779
BoxI	GACNNNNGTC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	3 cut(s)	585, 942, 1256
Bpu10I	CCTNAGC	2 cut(s)	345, 858
Bpu1102I	GCTNAGC	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	951
BsaBI	GATNNNNATC	2 cut(s)	981, 1260
BsaHI	GRCGYC	1 cut(s)	711
BsaWI	WCCGGW	2 cut(s)	78, 113
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 1223, 1253
Bsc4I	CCNNNNNNNGG	4 cut(s)	146, 194, 467, 966
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	785, 1106
Bse8I	GATNNNNATC	2 cut(s)	981, 1260
BseBI	CCWGG	4 cut(s)	603, 730, 879, 1274
BseCI	ATCGAT	1 cut(s)	951
BseGI	GGATG	5 cut(s)	188, 403, 632, 982, 1261
BseJI	GATNNNNATC	2 cut(s)	981, 1260
BseLI	CCNNNNNNNGG	4 cut(s)	146, 194, 467, 966
BseMII	CTCAG	6 cut(s)	11, 107, 147, 236, 849, 990
BseNI	ACTGG	2 cut(s)	785, 1106
BsePI	GCGCGC	1 cut(s)	373
BseRI	GAGGAG	5 cut(s)	210, 332, 335, 434, 1244
BseXI	GCAGC	1 cut(s)	101
BseYI	CCCAGC	2 cut(s)	41, 61
Bsh1236I	CGCG	2 cut(s)	375, 654
BshFI	GGCC	2 cut(s)	733, 959
BshTI	ACCGGT	1 cut(s)	78
BshVI	ATCGAT	1 cut(s)	951
BsiHKAI	GWGCWC	4 cut(s)	342, 460, 696, 775
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	3 cut(s)	79, 114, 468
BslFI	GGGAC	2 cut(s)	251, 514
BslI	CCNNNNNNNGG	4 cut(s)	146, 194, 467, 966
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	2 cut(s)	251, 514
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	733, 959
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	5 cut(s)	342, 460, 696, 775, 920
Bsp143I	GATC	7 cut(s)	251, 756, 871, 931, 948, 952, 982
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	3 cut(s)	98, 362, 513
BspANI	GGCC	2 cut(s)	733, 959
BspCNI	CTCAG	6 cut(s)	12, 106, 146, 235, 850, 991
BspDI	ATCGAT	1 cut(s)	951
BspFNI	CGCG	2 cut(s)	375, 654
BspHI	TCATGA	3 cut(s)	544, 897, 993
BspPI	GGATC	1 cut(s)	977
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	785, 1106
BssAI	RCCGGY	1 cut(s)	78
BssHII	GCGCGC	1 cut(s)	373
BssMI	GATC	7 cut(s)	251, 756, 871, 931, 948, 952, 982
BssNI	GRCGYC	1 cut(s)	711
Bst2UI	CCWGG	4 cut(s)	603, 730, 879, 1274
Bst4CI	ACNGT	3 cut(s)	170, 969, 1239
Bst6I	CTCTTC	3 cut(s)	37, 309, 1131
BstACI	GRCGYC	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	342, 375
BstDEI	CTNAG	8 cut(s)	11, 20, 93, 133, 222, 345, 858, 999
BstF5I	GGATG	5 cut(s)	188, 403, 632, 982, 1261
BstFNI	CGCG	2 cut(s)	375, 654
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	3 cut(s)	375, 377, 436
BstKTI	GATC	7 cut(s)	254, 759, 874, 934, 951, 955, 985
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	7 cut(s)	251, 756, 871, 931, 948, 952, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	4 cut(s)	603, 730, 879, 1274
BstPAI	GACNNNNGTC	1 cut(s)	114
BstSCI	CCNGG	4 cut(s)	601, 728, 877, 1272
BstSFI	CTRYAG	1 cut(s)	441
BstUI	CGCG	2 cut(s)	375, 654
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	2 cut(s)	931, 982
BstYI	RGATCY	2 cut(s)	931, 982
Bsu15I	ATCGAT	1 cut(s)	951
BsuRI	GGCC	2 cut(s)	733, 959
BsuTUI	ATCGAT	1 cut(s)	951
BtsCI	GGATG	5 cut(s)	188, 403, 632, 982, 1261
Cac8I	GCNNGC	2 cut(s)	342, 375
CciI	TCATGA	3 cut(s)	544, 897, 993
CfoI	GCGC	3 cut(s)	375, 377, 436
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	424, 1239
ClaI	ATCGAT	1 cut(s)	951
Csp6I	GTAC	3 cut(s)	171, 247, 788
CspAI	ACCGGT	1 cut(s)	78
CviAII	CATG	5 cut(s)	545, 898, 994, 1055, 1216
CviQI	GTAC	3 cut(s)	171, 247, 788
DdeI	CTNAG	8 cut(s)	11, 20, 93, 133, 222, 345, 858, 999
DpnI	GATC	7 cut(s)	253, 758, 873, 933, 950, 954, 984
DpnII	GATC	7 cut(s)	251, 756, 871, 931, 948, 952, 982
Eam1104I	CTCTTC	3 cut(s)	37, 309, 1131
EarI	CTCTTC	3 cut(s)	37, 309, 1131
Eco147I	AGGCCT	1 cut(s)	733
Eco24I	GRGCYC	1 cut(s)	920
Eco47I	GGWCC	2 cut(s)	424, 1239
Eco57I	CTGAAG	1 cut(s)	932
Eco88I	CYCGRG	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	863
EcoRII	CCWGG	4 cut(s)	601, 728, 877, 1272
EcoT38I	GRGCYC	1 cut(s)	920
FaeI	CATG	5 cut(s)	548, 901, 997, 1058, 1219
FalI	AAGNNNNNCTT	2 cut(s)	827, 859
FaqI	GGGAC	2 cut(s)	251, 514
FatI	CATG	5 cut(s)	544, 897, 993, 1054, 1215
FbaI	TGATCA	1 cut(s)	756
Fnu4HI	GCNGC	3 cut(s)	90, 98, 363
FokI	GGATG	5 cut(s)	175, 410, 639, 989, 1268
FriOI	GRGCYC	1 cut(s)	920
Fsp4HI	GCNGC	3 cut(s)	90, 98, 363
GlaI	GCGC	3 cut(s)	374, 376, 435
GluI	GCNGC	3 cut(s)	90, 98, 363
GsaI	CCCAGC	2 cut(s)	45, 65
GsuI	CTGGAG	3 cut(s)	585, 942, 1256
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	2 cut(s)	733, 959
HapII	CCGG	3 cut(s)	79, 114, 468
HhaI	GCGC	3 cut(s)	375, 377, 436
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	5 cut(s)	548, 901, 997, 1058, 1219
Hin6I	GCGC	3 cut(s)	373, 375, 434
HinP1I	GCGC	3 cut(s)	373, 375, 434
HincII	GTYRAC	1 cut(s)	1166
HindII	GTYRAC	1 cut(s)	1166
HinfI	GANTC	5 cut(s)	110, 155, 203, 389, 1174
HpaII	CCGG	3 cut(s)	79, 114, 468
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	280, 1166
Hpy188III	TCNNGA	8 cut(s)	356, 545, 898, 921, 994, 1064, 1150, 1249
Hpy8I	GTNNAC	2 cut(s)	280, 1166
HpyAV	CCTTC	7 cut(s)	283, 397, 409, 499, 907, 1099, 1183
HpyCH4III	ACNGT	3 cut(s)	170, 969, 1239
HpyCH4IV	ACGT	1 cut(s)	711
HpyCH4V	TGCA	1 cut(s)	1060
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	8 cut(s)	11, 20, 93, 133, 222, 345, 858, 999
HpySE526I	ACGT	1 cut(s)	711
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	5 cut(s)	548, 901, 997, 1058, 1219
HspAI	GCGC	3 cut(s)	373, 375, 434
Ksp22I	TGATCA	1 cut(s)	756
Kzo9I	GATC	7 cut(s)	251, 756, 871, 931, 948, 952, 982
LmnI	GCTCC	5 cut(s)	322, 370, 463, 770, 1231
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	2 cut(s)	730, 1069
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	2 cut(s)	116, 676
MalI	GATC	7 cut(s)	253, 758, 873, 933, 950, 954, 984
MboI	GATC	7 cut(s)	251, 756, 871, 931, 948, 952, 982
MflI	RGATCY	2 cut(s)	931, 982
MhlI	GDGCHC	5 cut(s)	342, 460, 696, 775, 920
MluCI	AATT	9 cut(s)	266, 296, 450, 487, 582, 798, 863, 1157, 1209
MlyI	GAGTC	2 cut(s)	104, 149
MseI	TTAA	6 cut(s)	56, 614, 848, 963, 1160, 1284
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	3 cut(s)	79, 114, 468
MspR9I	CCNGG	4 cut(s)	603, 730, 879, 1274
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	4 cut(s)	603, 730, 879, 1274
MvnI	CGCG	2 cut(s)	375, 654
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeII	GATC	7 cut(s)	251, 756, 871, 931, 948, 952, 982
NlaIII	CATG	5 cut(s)	548, 901, 997, 1058, 1219
NmuCI	GTSAC	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	356
PagI	TCATGA	3 cut(s)	544, 897, 993
PauI	GCGCGC	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	733
PctI	GAATGC	1 cut(s)	469
PfeI	GAWTC	3 cut(s)	203, 389, 1174
PflMI	CCANNNNNTGG	1 cut(s)	194
PinAI	ACCGGT	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	91, 99, 364
PleI	GAGTC	2 cut(s)	104, 149
PpsI	GAGTC	2 cut(s)	104, 149
PshAI	GACNNNNGTC	1 cut(s)	114
Psp6I	CCWGG	4 cut(s)	601, 728, 877, 1272
PspFI	CCCAGC	2 cut(s)	41, 61
PspGI	CCWGG	4 cut(s)	601, 728, 877, 1272
PspPI	GGNCC	2 cut(s)	424, 1239
PsuI	RGATCY	2 cut(s)	931, 982
PteI	GCGCGC	1 cut(s)	373
RsaI	GTAC	3 cut(s)	172, 248, 789
RsaNI	GTAC	3 cut(s)	171, 247, 788
SaqAI	TTAA	6 cut(s)	56, 614, 848, 963, 1160, 1284
SatI	GCNGC	3 cut(s)	90, 98, 363
Sau3AI	GATC	7 cut(s)	251, 756, 871, 931, 948, 952, 982
Sau96I	GGNCC	2 cut(s)	424, 1239
SchI	GAGTC	2 cut(s)	104, 149
ScrFI	CCNGG	4 cut(s)	603, 730, 879, 1274
SduI	GDGCHC	5 cut(s)	342, 460, 696, 775, 920
SfaNI	GCATC	2 cut(s)	730, 1069
SfcI	CTRYAG	1 cut(s)	441
Sfr274I	CTCGAG	1 cut(s)	356
SinI	GGWCC	2 cut(s)	424, 1239
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	9 cut(s)	266, 296, 450, 487, 582, 798, 863, 1157, 1209
SseBI	AGGCCT	1 cut(s)	733
SsiI	CCGC	3 cut(s)	98, 362, 513
SspI	AATATT	1 cut(s)	944
StuI	AGGCCT	1 cut(s)	733
StyD4I	CCNGG	4 cut(s)	601, 728, 877, 1272
TaaI	ACNGT	3 cut(s)	170, 969, 1239
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	2 cut(s)	357, 951
TasI	AATT	9 cut(s)	266, 296, 450, 487, 582, 798, 863, 1157, 1209
TatI	WGTACW	2 cut(s)	246, 787
TauI	GCSGC	2 cut(s)	100, 365
TfiI	GAWTC	3 cut(s)	203, 389, 1174
Tru1I	TTAA	6 cut(s)	56, 614, 848, 963, 1160, 1284
Tru9I	TTAA	6 cut(s)	56, 614, 848, 963, 1160, 1284
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	8 cut(s)	17, 561, 824, 886, 900, 979, 993, 1025
TspGWI	ACGGA	2 cut(s)	181, 538
Van91I	CCANNNNNTGG	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	424, 1239
XapI	RAATTY	3 cut(s)	582, 798, 863
XhoI	CTCGAG	1 cut(s)	356
ZraI	GACGTC	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.