Rroxscaffold_1G00057400
ERF Family

Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. Era GTPase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
79369424 .. 79373594
4171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057400.1

Sequence Viewer

Length: 1287 bp
ATGAAGTCTTTGAGAGCCCTGAGGCTCCTCTCTTCCAAACCCACCAACACCACTCCATCCCCAACCTTCCTCCTCCTCCGCCGCCGCTTCTACGCCGCCCAACCCCAACAATCCGATCCCACCCACACCCCATCCTCCTCAGAGTCCGACGCCGAAAACAGCTTCGACAGTACCCACTACGACTTACCCACCGCCGCTTCGGATTCCAAACCCCAAAACCCGAGTTGGGACGAGAAGTACAGAAGCAAAGCCGATAGATTGGTACCCGGGGATGAGGCCCACAAAGCAAAGCTGAGGTTTTTGAAGGAGGAGGAGGACGAGAGGAAGCGGAGGCTGCTCGCTAAGGCGCTGCTTGAGGCGGCGCTGGAGAGAGGAGATGAGGAGGAATCGGACGGTGAGGATGAGGTAGTCAAGGAGGAGGACCAGAAGTCTTTGACGGTTGGGATTATTGGGGCTCCCAATGCCGGAAAGTCTGCGCTGACGAATTACATGGTTGGAACAAAGGTTTCTGCTGTTTCACGGAAGACAAACACAACTACTCATGAAGTGTTAGGAGTTATAACAGAAGGAGACACCCAAATTTGTTTCTTTGATACTCCAGGTCTTTCAATAAACACCCGTGGAATTCCGTACAAGGATTTCAAGGTTCGTGTTGAAAGTGCTTGGAGCTCAGTTAATTTATATGATGTCCTCATAGTTATTTTTGACGTCCATAGGCATCTTACCAGACCTGATGTAAGGGTTATAAAAACGATCAAACGCATGGGAATGGAGCCACACCCAACACAAAAGCGAGTTTTATGTATGAACAAGGTTGATTTAGTTGAGAAGAAGAAAGACTTGTTAACTGTTGCCGAGCAATTTAAAGATCTACCCGGGTATGAAAGGCATTTCATGATTTCAGGTCTGAAGGGCTTTGGAGTTAAAGATCTTACTGAATACTTGATGCTTCAGGCATTTAAAAGACCTTGGGAAGAAGATCCCTTCACCATGAGCGAGGAAGTTTTGAAGAATATATCACTAGAAGTTGTCCGAGAAAAGTTGTTGGACCATATACATCAGGAAATCCCATATGATATTGATCATCGTTTGATAGACTGGAAGGAGTTGCGAGATGGTTCTATTCGGATTGAACAGCATTTCATCACTCACAAACCAAGCCAACGCAAGATTCTTGTAGGAAAGAGGGGGTCTAAAATAGGGAGAATCGGCATGGAAGCCAATGAAGAGCTAAGATCCATCTTCAAGAGGGATGTGCATCTCTTTCTCCTGGTTAGACTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

428

Amino Acids

49.07

Weight (kDa)

8.26

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP_EFTU PF00009 144 - 316 1.5e-06 Elongation factor Tu GTP binding domain
MMR_HSR1 PF01926 146 - 271 1.2e-17 50S ribosome-binding GTPase
KH_2 PF07650 355 - 423 2.6e-09 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 560, 746
AatII GACGTC 1 cut(s) 711
Acc65I GGTACC 1 cut(s) 262
AccB1I GGYRCC 1 cut(s) 262
AciI CCGC 8 cut(s) 79, 82, 85, 96, 192, 195, 328, 359
AclWI GGATC 3 cut(s) 110, 974, 1230
AcsI RAATTY 2 cut(s) 579, 624
AcuI CTGAAG 2 cut(s) 929, 935
AcyI GRCGYC 2 cut(s) 150, 708
AfaI GTAC 4 cut(s) 172, 239, 264, 632
AfiI CCNNNNNNNGG 2 cut(s) 226, 464
AgsI TTSAA 7 cut(s) 304, 609, 643, 656, 1009, 1133, 1246
AhdI GACNNNNNGTC 1 cut(s) 427
AjnI CCWGG 2 cut(s) 598, 1269
AjuI GAANNNNNNNTTGG 2 cut(s) 1155, 1187
AluBI AGCT 4 cut(s) 162, 292, 669, 1231
AluI AGCT 4 cut(s) 162, 292, 669, 1231
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 1 cut(s) 564
AlwI GGATC 3 cut(s) 110, 974, 1230
Ama87I CYCGRG 3 cut(s) 220, 266, 875
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 2 cut(s) 334, 349
ApoI RAATTY 2 cut(s) 579, 624
Asp718I GGTACC 1 cut(s) 262
AspLEI GCGC 3 cut(s) 349, 364, 478
AspS9I GGNCC 3 cut(s) 277, 421, 1048
AsuC2I CCSGG 4 cut(s) 267, 268, 876, 877
AsuHPI GGTGA 2 cut(s) 407, 979
AvaI CYCGRG 3 cut(s) 220, 266, 875
AvaII GGWCC 2 cut(s) 421, 1048
AxyI CCTNAGG 1 cut(s) 20
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 3 cut(s) 19, 457, 671
BbsI GAAGAC 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 671
BbvCI CCTCAGC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 321, 336
BccI CCATC 4 cut(s) 64, 139, 1109, 1247
BciT130I CCWGG 2 cut(s) 600, 1271
BclI TGATCA 1 cut(s) 1081
BcnI CCSGG 4 cut(s) 267, 268, 876, 877
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 1 cut(s) 1022
BfoI RGCGCY 2 cut(s) 350, 365
BglII AGATCT 2 cut(s) 868, 928
BisI GCNGC 7 cut(s) 82, 85, 96, 195, 335, 350, 360
BlsI GCNGC 7 cut(s) 83, 86, 97, 196, 336, 351, 361
Bme1390I CCNGG 6 cut(s) 267, 268, 600, 876, 877, 1271
Bme18I GGWCC 2 cut(s) 421, 1048
BmeRI GACNNNNNGTC 1 cut(s) 427
BmeT110I CYCGRG 3 cut(s) 220, 266, 875
BmgT120I GGNCC 3 cut(s) 277, 421, 1048
BmiI GGNNCC 4 cut(s) 26, 264, 456, 774
BmrFI CCNGG 6 cut(s) 267, 268, 600, 876, 877, 1271
BmsI GCATC 3 cut(s) 727, 936, 1267
BpiI GAAGAC 1 cut(s) 530
BpmI CTGGAG 2 cut(s) 386, 582
Bpu10I CCTNAGC 2 cut(s) 293, 342
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 4 cut(s) 267, 268, 876, 877
BsaBI GATNNNNATC 2 cut(s) 1080, 1257
BsaHI GRCGYC 2 cut(s) 150, 708
BsaJI CCNNGG 5 cut(s) 266, 267, 619, 875, 968
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 464
Bse1I ACTGG 1 cut(s) 1103
Bse21I CCTNAGG 1 cut(s) 20
Bse8I GATNNNNATC 2 cut(s) 1080, 1257
BseBI CCWGG 2 cut(s) 600, 1271
BseDI CCNNGG 5 cut(s) 266, 267, 619, 875, 968
BseGI GGATG 5 cut(s) 56, 131, 277, 406, 1258
BseJI GATNNNNATC 2 cut(s) 1080, 1257
BseLI CCNNNNNNNGG 2 cut(s) 226, 464
BseMII CTCAG 4 cut(s) 11, 153, 284, 684
BseNI ACTGG 1 cut(s) 1103
BseRI GAGGAG 9 cut(s) 17, 62, 65, 127, 323, 326, 387, 395, 431
BseXI GCAGC 2 cut(s) 321, 336
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 671
BsiHKCI CYCGRG 3 cut(s) 220, 266, 875
BsiSI CCGG 3 cut(s) 267, 465, 876
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 226, 464
BsmAI GTCTC 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 3 cut(s) 220, 266, 875
Bsp1286I GDGCHC 3 cut(s) 19, 457, 671
Bsp143I GATC 7 cut(s) 115, 753, 868, 928, 979, 1081, 1235
BspACI CCGC 8 cut(s) 79, 82, 85, 96, 192, 195, 328, 359
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 4 cut(s) 12, 152, 285, 683
BspHI TCATGA 2 cut(s) 541, 894
BspLI GGNNCC 4 cut(s) 26, 264, 456, 774
BspPI GGATC 3 cut(s) 110, 974, 1230
BspQI GCTCTTC 1 cut(s) 1221
BspT107I GGYRCC 1 cut(s) 262
BsrI ACTGG 1 cut(s) 1103
BssECI CCNNGG 5 cut(s) 266, 267, 619, 875, 968
BssMI GATC 7 cut(s) 115, 753, 868, 928, 979, 1081, 1235
BssNI GRCGYC 2 cut(s) 150, 708
BssT1I CCWWGG 1 cut(s) 968
Bst2UI CCWGG 2 cut(s) 600, 1271
Bst4CI ACNGT 4 cut(s) 170, 395, 439, 850
Bst6I CTCTTC 2 cut(s) 37, 1221
BstACI GRCGYC 2 cut(s) 150, 708
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 6 cut(s) 20, 139, 293, 342, 670, 1232
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 5 cut(s) 56, 131, 277, 406, 1258
BstH2I RGCGCY 2 cut(s) 350, 365
BstHHI GCGC 3 cut(s) 349, 364, 478
BstKTI GATC 7 cut(s) 118, 756, 871, 931, 982, 1084, 1238
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 7 cut(s) 115, 753, 868, 928, 979, 1081, 1235
BstMWI GCNNNNNNNGC 3 cut(s) 284, 334, 461
BstNI CCWGG 2 cut(s) 600, 1271
BstSCI CCNGG 6 cut(s) 265, 266, 598, 874, 875, 1269
BstV1I GCAGC 2 cut(s) 321, 336
BstV2I GAAGAC 1 cut(s) 530
BstX2I RGATCY 4 cut(s) 868, 928, 979, 1235
BstYI RGATCY 4 cut(s) 868, 928, 979, 1235
Bsu36I CCTNAGG 1 cut(s) 20
BsuRI GGCC 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 619
BtsCI GGATG 5 cut(s) 56, 131, 277, 406, 1258
Cac8I GCNNGC 1 cut(s) 339
CciI TCATGA 2 cut(s) 541, 894
CfoI GCGC 3 cut(s) 349, 364, 478
Cfr13I GGNCC 3 cut(s) 277, 421, 1048
Cfr9I CCCGGG 2 cut(s) 266, 875
CseI GACGC 1 cut(s) 158
Csp6I GTAC 4 cut(s) 171, 238, 263, 631
CviAII CATG 6 cut(s) 490, 542, 763, 895, 991, 1213
CviQI GTAC 4 cut(s) 171, 238, 263, 631
DdeI CTNAG 6 cut(s) 20, 139, 293, 342, 670, 1232
DpnI GATC 7 cut(s) 117, 755, 870, 930, 981, 1083, 1237
DpnII GATC 7 cut(s) 115, 753, 868, 928, 979, 1081, 1235
DraI TTTAAA 2 cut(s) 865, 961
DriI GACNNNNNGTC 1 cut(s) 427
Eam1104I CTCTTC 2 cut(s) 37, 1221
Eam1105I GACNNNNNGTC 1 cut(s) 427
EarI CTCTTC 2 cut(s) 37, 1221
EciI GGCGGA 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 669
Eco130I CCWWGG 1 cut(s) 968
Eco24I GRGCYC 3 cut(s) 19, 457, 671
Eco47I GGWCC 2 cut(s) 421, 1048
Eco53kI GAGCTC 1 cut(s) 669
Eco57I CTGAAG 2 cut(s) 929, 935
Eco81I CCTNAGG 1 cut(s) 20
Eco88I CYCGRG 3 cut(s) 220, 266, 875
EcoICRI GAGCTC 1 cut(s) 669
EcoRI GAATTC 1 cut(s) 624
EcoRII CCWGG 2 cut(s) 598, 1269
EcoT14I CCWWGG 1 cut(s) 968
EcoT38I GRGCYC 3 cut(s) 19, 457, 671
ErhI CCWWGG 1 cut(s) 968
FaeI CATG 6 cut(s) 493, 545, 766, 898, 994, 1216
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 1 cut(s) 242
FatI CATG 6 cut(s) 489, 541, 762, 894, 990, 1212
FauNDI CATATG 1 cut(s) 1072
FbaI TGATCA 1 cut(s) 1081
Fnu4HI GCNGC 7 cut(s) 82, 85, 96, 195, 335, 350, 360
FokI GGATG 5 cut(s) 43, 118, 284, 413, 1265
FriOI GRGCYC 3 cut(s) 19, 457, 671
Fsp4HI GCNGC 7 cut(s) 82, 85, 96, 195, 335, 350, 360
FspBI CTAG 1 cut(s) 1022
GlaI GCGC 3 cut(s) 348, 363, 477
GluI GCNGC 7 cut(s) 82, 85, 96, 195, 335, 350, 360
GsuI CTGGAG 2 cut(s) 386, 582
HaeII RGCGCY 2 cut(s) 350, 365
HaeIII GGCC 1 cut(s) 278
HapII CCGG 3 cut(s) 267, 465, 876
HgaI GACGC 1 cut(s) 158
HhaI GCGC 3 cut(s) 349, 364, 478
Hin1I GRCGYC 2 cut(s) 150, 708
Hin1II CATG 6 cut(s) 493, 545, 766, 898, 994, 1216
Hin6I GCGC 3 cut(s) 347, 362, 476
HinP1I GCGC 3 cut(s) 347, 362, 476
HincII GTYRAC 1 cut(s) 846
HindII GTYRAC 1 cut(s) 846
HinfI GANTC 5 cut(s) 143, 203, 386, 1171, 1206
HpaI GTTAAC 1 cut(s) 846
HpaII CCGG 3 cut(s) 267, 465, 876
HphI GGTGA 2 cut(s) 407, 979
Hpy166II GTNNAC 1 cut(s) 846
Hpy188I TCNGA 8 cut(s) 115, 142, 148, 202, 391, 909, 1034, 1128
Hpy188III TCNNGA 4 cut(s) 542, 895, 1061, 1246
Hpy8I GTNNAC 1 cut(s) 846
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 6 cut(s) 76, 298, 560, 904, 994, 1096
HpyCH4III ACNGT 4 cut(s) 170, 395, 439, 850
HpyCH4IV ACGT 1 cut(s) 708
HpyCH4V TGCA 1 cut(s) 1258
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 334, 461
HpyF3I CTNAG 6 cut(s) 20, 139, 293, 342, 670, 1232
HpySE526I ACGT 1 cut(s) 708
Hsp92I GRCGYC 2 cut(s) 150, 708
Hsp92II CATG 6 cut(s) 493, 545, 766, 898, 994, 1216
HspAI GCGC 3 cut(s) 347, 362, 476
KpnI GGTACC 1 cut(s) 266
Ksp22I TGATCA 1 cut(s) 1081
KspAI GTTAAC 1 cut(s) 846
Kzo9I GATC 7 cut(s) 115, 753, 868, 928, 979, 1081, 1235
LguI GCTCTTC 1 cut(s) 1221
LmnI GCTCC 4 cut(s) 30, 460, 666, 772
Lsp1109I GCAGC 2 cut(s) 321, 336
LweI GCATC 3 cut(s) 727, 936, 1267
MaeI CTAG 1 cut(s) 1022
MaeII ACGT 1 cut(s) 708
MalI GATC 7 cut(s) 117, 755, 870, 930, 981, 1083, 1237
MboI GATC 7 cut(s) 115, 753, 868, 928, 979, 1081, 1235
MboII GAAGA 9 cut(s) 24, 535, 841, 844, 986, 989, 1021, 1234, 1238
MflI RGATCY 4 cut(s) 868, 928, 979, 1235
MhlI GDGCHC 3 cut(s) 19, 457, 671
MluCI AATT 5 cut(s) 484, 579, 624, 676, 860
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 3 cut(s) 171, 475, 1026
MseI TTAA 6 cut(s) 675, 845, 864, 924, 960, 1281
MslI CAYNNNNRTG 1 cut(s) 767
MspI CCGG 3 cut(s) 267, 465, 876
MspR9I CCNGG 6 cut(s) 267, 268, 600, 876, 877, 1271
MvaI CCWGG 2 cut(s) 600, 1271
MwoI GCNNNNNNNGC 3 cut(s) 284, 334, 461
NciI CCSGG 4 cut(s) 267, 268, 876, 877
NdeI CATATG 1 cut(s) 1072
NdeII GATC 7 cut(s) 115, 753, 868, 928, 979, 1081, 1235
NlaIII CATG 6 cut(s) 493, 545, 766, 898, 994, 1216
NlaIV GGNNCC 4 cut(s) 26, 264, 456, 774
NmeAIII GCCGAG 1 cut(s) 880
PagI TCATGA 2 cut(s) 541, 894
PciSI GCTCTTC 1 cut(s) 1221
PfeI GAWTC 4 cut(s) 203, 386, 1171, 1206
PkrI GCNGC 7 cut(s) 83, 86, 97, 196, 336, 351, 361
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PsiI TTATAA 2 cut(s) 560, 746
Psp124BI GAGCTC 1 cut(s) 671
Psp6I CCWGG 2 cut(s) 598, 1269
PspGI CCWGG 2 cut(s) 598, 1269
PspN4I GGNNCC 4 cut(s) 26, 264, 456, 774
PspPI GGNCC 3 cut(s) 277, 421, 1048
PsuI RGATCY 4 cut(s) 868, 928, 979, 1235
RsaI GTAC 4 cut(s) 172, 239, 264, 632
RsaNI GTAC 4 cut(s) 171, 238, 263, 631
RseI CAYNNNNRTG 1 cut(s) 767
SacI GAGCTC 1 cut(s) 671
SapI GCTCTTC 1 cut(s) 1221
SaqAI TTAA 6 cut(s) 675, 845, 864, 924, 960, 1281
SatI GCNGC 7 cut(s) 82, 85, 96, 195, 335, 350, 360
Sau3AI GATC 7 cut(s) 115, 753, 868, 928, 979, 1081, 1235
Sau96I GGNCC 3 cut(s) 277, 421, 1048
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 6 cut(s) 267, 268, 600, 876, 877, 1271
SduI GDGCHC 3 cut(s) 19, 457, 671
SfaNI GCATC 3 cut(s) 727, 936, 1267
SinI GGWCC 2 cut(s) 421, 1048
SmaI CCCGGG 2 cut(s) 268, 877
SmiMI CAYNNNNRTG 1 cut(s) 767
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 5 cut(s) 484, 579, 624, 676, 860
SsiI CCGC 8 cut(s) 79, 82, 85, 96, 192, 195, 328, 359
SspMI CTAG 1 cut(s) 1022
SstI GAGCTC 1 cut(s) 671
StyD4I CCNGG 6 cut(s) 265, 266, 598, 874, 875, 1269
StyI CCWWGG 1 cut(s) 968
TaaI ACNGT 4 cut(s) 170, 395, 439, 850
TaiI ACGT 1 cut(s) 711
TaqI TCGA 1 cut(s) 165
TasI AATT 5 cut(s) 484, 579, 624, 676, 860
TatI WGTACW 1 cut(s) 237
TauI GCSGC 5 cut(s) 84, 87, 98, 197, 362
TfiI GAWTC 4 cut(s) 203, 386, 1171, 1206
Tru1I TTAA 6 cut(s) 675, 845, 864, 924, 960, 1281
Tru9I TTAA 6 cut(s) 675, 845, 864, 924, 960, 1281
TseI GCWGC 2 cut(s) 334, 349
TspDTI ATGAA 7 cut(s) 17, 558, 821, 883, 897, 1132, 1239
TspGWI ACGGA 2 cut(s) 535, 618
TspMI CCCGGG 2 cut(s) 266, 875
VpaK11BI GGWCC 2 cut(s) 421, 1048
XapI RAATTY 2 cut(s) 579, 624
XmaI CCCGGG 2 cut(s) 266, 875
XspI CTAG 1 cut(s) 1022
ZraI GACGTC 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.