Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008713

Physical Location & Seq

Genomic Coordinates Forward (+)

16714503 .. 16718233

Gene Structure 3731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGAAATCTTTGAGAGCCCTGAGGCTCCTCTCTTCCAAACCCACCAACACCACTCCATCCCCAACCTTCCTCCTCCTCCTCCTCCGCCGCCGCTTCTACGCCGCCCAACCCCAACAATCCGATTCCGCCCACACCCCATCCTCCTCAGAATCCGACGCCGAAAACAGCTTCGACAGTACCCTCTACGACTTACCCACCACCGCTTCGGACTCCAAACCCCAAATCCCGACTTGGGACGAGAAGTACAGAAGCAAAGCCGATAGATTGGTACCCGGGGATGAGGCCCACAAAGCAAAGCTGAGGTTTTTGAAGGAGGAGGAGGACGAGAGGAAGCGGAGGCTGCTCGCTAAGGCGCTGCTTGAGGCGGCGCTGGAGAGAGGTGATGAGGAGGAATCGGACGGTGAGGATGAGGTGGTCAAGGAGGAGGACCAGAAGTCTTTGACGGTTGGGATTATTGGGGCTCCCAATGCCGGAAAGTCCGCGCTGACGAATTATATGGTTGGAACAAAGGTTTCTGCTGTTTCACGGAAGACAAACACAACTACTCATGAAGTGTTAGGAGTTATAACAGAAGGAGACACCCAAATTTGTTTCTTTGATACTCCAGGTCTTTCCATAAACACCCGTGGAATTCCATACAAGGATTTCAAGGTTCGTGTTGAAAGTGCTTGGAGCTCAGTTAATTTATATGATGTCCTCATAGTTATTTTTGACGTCCATAGGCATCTTACCAGACCTGATGTAAGGGTTATAAAAACAATCAAACGCATGGGAATGGAGCCACACCCAACACAAAAGCGAGTTTTATGTATGAACAAGGTTGATTTAGTTGAGAAGAAGAAAGACTTGTTAACGGTTGCCGAGCAATTTAAAGATCTACCCGGGTATGAAAGGCATTTCATGATTTCAGGTCTGAAGGGCTTTGGAGTTAAAGATCTTACTGAATACTTGATGCTTCAGGCATTTAAAAGACCTTGGGAAGAAGATCCCTTCACCATGAGCCAGGAAGTTTTGAAGAATATATCACTAGAAGTTGTCCGAGAAAAGTTGTTAGACCATATACATCAGGAAATCCCATATGATATTGATCATCGTTTGATAGACTGGAAGGAGTTGCGAGATGGTTCTATTCGGATTGAACAGCATTTCATCACTCACAAACCAAGCCAACGCAAGATTCTTGTAGGAAAGAGGGGGTCTAAAATAGGGAGAATCGGCATGGAAGCCAATGAAGAGCTAAGATCCATCTTCAAGAGGGATGTGCATCTCTTTCTCCTGGTTAGACTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

431

Amino Acids

49.28

Weight (kDa)

8.54

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	146 - 318	1.3e-06	Elongation factor Tu GTP binding domain
MMR_HSR1	PF01926	148 - 273	1.2e-17	50S ribosome-binding GTPase
KH_2	PF07650	357 - 425	2.6e-09	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30960
fragaria_vesca	FvH4_3g12950 FvH4_3g12950
malus_domestica	MD05G1246900.v1.1 MD10G1227500.v1.1
prunus_persica	Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1 Prupe.4G117500_v2.0.a1
pyrus_communis	pycom05g22280 pycom10g19100
rosa_chinensis	RchiOBHm_Chr5g0021061
rosa_laevigata	RLG00000032580
rosa_multiflora	Rmu_ssc0000244.1_g000017
rosa_roxburghii	Rroxscaffold_1G00057400
rosa_rugosa	Rorug05G0063800 Rorug05G0063800 Rorug05G0063900 Rorug05G0064000
rosa_samantha	Rh5AG153600 Rh5BG153300 Rh5CG166200 Rh5DG152900
rosa_wichuraiana	Rw5G013650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	566, 752
AatII	GACGTC	1 cut(s)	717
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AccII	CGCG	1 cut(s)	482
AciI	CCGC	9 cut(s)	85, 88, 91, 102, 126, 201, 334, 365, 480
AclWI	GGATC	2 cut(s)	980, 1236
AcsI	RAATTY	2 cut(s)	585, 630
AcuI	CTGAAG	2 cut(s)	935, 941
AcyI	GRCGYC	2 cut(s)	156, 714
AfaI	GTAC	3 cut(s)	178, 245, 270
AfiI	CCNNNNNNNGG	2 cut(s)	232, 470
AgsI	TTSAA	6 cut(s)	310, 649, 662, 1015, 1139, 1252
AhdI	GACNNNNNGTC	1 cut(s)	433
AjnI	CCWGG	3 cut(s)	604, 1002, 1275
AjuI	GAANNNNNNNTTGG	2 cut(s)	1161, 1193
AluBI	AGCT	4 cut(s)	168, 298, 675, 1237
AluI	AGCT	4 cut(s)	168, 298, 675, 1237
Alw21I	GWGCWC	1 cut(s)	677
Alw26I	GTCTC	1 cut(s)	570
AlwI	GGATC	2 cut(s)	980, 1236
Ama87I	CYCGRG	2 cut(s)	272, 881
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	340, 355
ApoI	RAATTY	2 cut(s)	585, 630
Asp718I	GGTACC	1 cut(s)	268
AspLEI	GCGC	3 cut(s)	355, 370, 484
AspS9I	GGNCC	2 cut(s)	283, 427
AsuC2I	CCSGG	4 cut(s)	273, 274, 882, 883
AsuHPI	GGTGA	3 cut(s)	392, 413, 985
AvaI	CYCGRG	2 cut(s)	272, 881
AvaII	GGWCC	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	3 cut(s)	19, 463, 677
BbsI	GAAGAC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	677
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	327, 342
BccI	CCATC	4 cut(s)	64, 145, 1115, 1253
BciT130I	CCWGG	3 cut(s)	606, 1004, 1277
BclI	TGATCA	1 cut(s)	1087
BcnI	CCSGG	4 cut(s)	273, 274, 882, 883
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	1 cut(s)	1028
BfoI	RGCGCY	2 cut(s)	356, 371
BglII	AGATCT	2 cut(s)	874, 934
BisI	GCNGC	6 cut(s)	88, 91, 102, 341, 356, 366
BlsI	GCNGC	6 cut(s)	89, 92, 103, 342, 357, 367
Bme1390I	CCNGG	7 cut(s)	273, 274, 606, 882, 883, 1004, 1277
Bme18I	GGWCC	1 cut(s)	427
BmeRI	GACNNNNNGTC	1 cut(s)	433
BmeT110I	CYCGRG	2 cut(s)	272, 881
BmgT120I	GGNCC	2 cut(s)	283, 427
BmiI	GGNNCC	4 cut(s)	26, 270, 462, 780
BmrFI	CCNGG	7 cut(s)	273, 274, 606, 882, 883, 1004, 1277
BmsI	GCATC	3 cut(s)	733, 942, 1273
BpiI	GAAGAC	1 cut(s)	536
BpmI	CTGGAG	2 cut(s)	392, 588
Bpu10I	CCTNAGC	2 cut(s)	299, 348
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	4 cut(s)	273, 274, 882, 883
BsaBI	GATNNNNATC	2 cut(s)	1086, 1263
BsaHI	GRCGYC	2 cut(s)	156, 714
BsaJI	CCNNGG	5 cut(s)	272, 273, 625, 881, 974
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 470
Bse1I	ACTGG	1 cut(s)	1109
Bse21I	CCTNAGG	1 cut(s)	20
Bse8I	GATNNNNATC	2 cut(s)	1086, 1263
BseBI	CCWGG	3 cut(s)	606, 1004, 1277
BseDI	CCNNGG	5 cut(s)	272, 273, 625, 881, 974
BseGI	GGATG	5 cut(s)	56, 137, 283, 412, 1264
BseJI	GATNNNNATC	2 cut(s)	1086, 1263
BseLI	CCNNNNNNNGG	2 cut(s)	232, 470
BseMII	CTCAG	4 cut(s)	11, 159, 290, 690
BseNI	ACTGG	1 cut(s)	1109
BseXI	GCAGC	2 cut(s)	327, 342
Bsh1236I	CGCG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	284
BshNI	GGYRCC	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	677
BsiHKCI	CYCGRG	2 cut(s)	272, 881
BsiSI	CCGG	3 cut(s)	273, 471, 882
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	232, 470
BsmAI	GTCTC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	284
BsoBI	CYCGRG	2 cut(s)	272, 881
Bsp1286I	GDGCHC	3 cut(s)	19, 463, 677
Bsp143I	GATC	5 cut(s)	874, 934, 985, 1087, 1241
BspACI	CCGC	9 cut(s)	85, 88, 91, 102, 126, 201, 334, 365, 480
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	4 cut(s)	12, 158, 291, 689
BspFNI	CGCG	1 cut(s)	482
BspHI	TCATGA	2 cut(s)	547, 900
BspLI	GGNNCC	4 cut(s)	26, 270, 462, 780
BspPI	GGATC	2 cut(s)	980, 1236
BspQI	GCTCTTC	1 cut(s)	1227
BspT107I	GGYRCC	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	1109
BssECI	CCNNGG	5 cut(s)	272, 273, 625, 881, 974
BssMI	GATC	5 cut(s)	874, 934, 985, 1087, 1241
BssNI	GRCGYC	2 cut(s)	156, 714
BssT1I	CCWWGG	1 cut(s)	974
Bst2UI	CCWGG	3 cut(s)	606, 1004, 1277
Bst4CI	ACNGT	4 cut(s)	176, 401, 445, 856
Bst6I	CTCTTC	2 cut(s)	37, 1227
BstACI	GRCGYC	2 cut(s)	156, 714
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	6 cut(s)	20, 145, 299, 348, 676, 1238
BstDSI	CCRYGG	1 cut(s)	625
BstF5I	GGATG	5 cut(s)	56, 137, 283, 412, 1264
BstFNI	CGCG	1 cut(s)	482
BstH2I	RGCGCY	2 cut(s)	356, 371
BstHHI	GCGC	3 cut(s)	355, 370, 484
BstKTI	GATC	5 cut(s)	877, 937, 988, 1090, 1244
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	5 cut(s)	874, 934, 985, 1087, 1241
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 340, 467
BstNI	CCWGG	3 cut(s)	606, 1004, 1277
BstSCI	CCNGG	7 cut(s)	271, 272, 604, 880, 881, 1002, 1275
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	2 cut(s)	327, 342
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	4 cut(s)	874, 934, 985, 1241
BstYI	RGATCY	4 cut(s)	874, 934, 985, 1241
Bsu36I	CCTNAGG	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	625
BtsCI	GGATG	5 cut(s)	56, 137, 283, 412, 1264
Cac8I	GCNNGC	1 cut(s)	345
CciI	TCATGA	2 cut(s)	547, 900
CfoI	GCGC	3 cut(s)	355, 370, 484
Cfr13I	GGNCC	2 cut(s)	283, 427
Cfr9I	CCCGGG	2 cut(s)	272, 881
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	3 cut(s)	177, 244, 269
CviAII	CATG	5 cut(s)	548, 769, 901, 997, 1219
CviQI	GTAC	3 cut(s)	177, 244, 269
DdeI	CTNAG	6 cut(s)	20, 145, 299, 348, 676, 1238
DpnI	GATC	5 cut(s)	876, 936, 987, 1089, 1243
DpnII	GATC	5 cut(s)	874, 934, 985, 1087, 1241
DraI	TTTAAA	2 cut(s)	871, 967
DriI	GACNNNNNGTC	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	37, 1227
Eam1105I	GACNNNNNGTC	1 cut(s)	433
EarI	CTCTTC	2 cut(s)	37, 1227
EciI	GGCGGA	2 cut(s)	74, 115
Ecl136II	GAGCTC	1 cut(s)	675
Eco130I	CCWWGG	1 cut(s)	974
Eco24I	GRGCYC	3 cut(s)	19, 463, 677
Eco47I	GGWCC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	675
Eco57I	CTGAAG	2 cut(s)	935, 941
Eco81I	CCTNAGG	1 cut(s)	20
Eco88I	CYCGRG	2 cut(s)	272, 881
EcoICRI	GAGCTC	1 cut(s)	675
EcoRI	GAATTC	1 cut(s)	630
EcoRII	CCWGG	3 cut(s)	604, 1002, 1275
EcoT14I	CCWWGG	1 cut(s)	974
EcoT38I	GRGCYC	3 cut(s)	19, 463, 677
ErhI	CCWWGG	1 cut(s)	974
FaeI	CATG	5 cut(s)	551, 772, 904, 1000, 1222
FalI	AAGNNNNNCTT	2 cut(s)	830, 862
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	5 cut(s)	547, 768, 900, 996, 1218
FauNDI	CATATG	1 cut(s)	1078
FbaI	TGATCA	1 cut(s)	1087
Fnu4HI	GCNGC	6 cut(s)	88, 91, 102, 341, 356, 366
FokI	GGATG	5 cut(s)	43, 124, 290, 419, 1271
FriOI	GRGCYC	3 cut(s)	19, 463, 677
Fsp4HI	GCNGC	6 cut(s)	88, 91, 102, 341, 356, 366
FspBI	CTAG	1 cut(s)	1028
GlaI	GCGC	3 cut(s)	354, 369, 483
GluI	GCNGC	6 cut(s)	88, 91, 102, 341, 356, 366
GsuI	CTGGAG	2 cut(s)	392, 588
HaeII	RGCGCY	2 cut(s)	356, 371
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	3 cut(s)	273, 471, 882
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	3 cut(s)	355, 370, 484
Hin1I	GRCGYC	2 cut(s)	156, 714
Hin1II	CATG	5 cut(s)	551, 772, 904, 1000, 1222
Hin6I	GCGC	3 cut(s)	353, 368, 482
HinP1I	GCGC	3 cut(s)	353, 368, 482
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HinfI	GANTC	6 cut(s)	122, 149, 209, 392, 1177, 1212
HpaI	GTTAAC	1 cut(s)	852
HpaII	CCGG	3 cut(s)	273, 471, 882
HphI	GGTGA	3 cut(s)	392, 413, 985
Hpy166II	GTNNAC	1 cut(s)	852
Hpy188I	TCNGA	8 cut(s)	121, 148, 154, 208, 397, 915, 1040, 1134
Hpy188III	TCNNGA	5 cut(s)	226, 548, 901, 1067, 1252
Hpy8I	GTNNAC	1 cut(s)	852
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	6 cut(s)	76, 304, 566, 910, 1000, 1102
HpyCH4III	ACNGT	4 cut(s)	176, 401, 445, 856
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	1 cut(s)	1264
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 340, 467
HpyF3I	CTNAG	6 cut(s)	20, 145, 299, 348, 676, 1238
HpySE526I	ACGT	1 cut(s)	714
Hsp92I	GRCGYC	2 cut(s)	156, 714
Hsp92II	CATG	5 cut(s)	551, 772, 904, 1000, 1222
HspAI	GCGC	3 cut(s)	353, 368, 482
KpnI	GGTACC	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	1087
KspAI	GTTAAC	1 cut(s)	852
Kzo9I	GATC	5 cut(s)	874, 934, 985, 1087, 1241
LguI	GCTCTTC	1 cut(s)	1227
LmnI	GCTCC	4 cut(s)	30, 466, 672, 778
Lsp1109I	GCAGC	2 cut(s)	327, 342
LweI	GCATC	3 cut(s)	733, 942, 1273
MaeI	CTAG	1 cut(s)	1028
MaeII	ACGT	1 cut(s)	714
MalI	GATC	5 cut(s)	876, 936, 987, 1089, 1243
MboI	GATC	5 cut(s)	874, 934, 985, 1087, 1241
MboII	GAAGA	9 cut(s)	24, 541, 847, 850, 992, 995, 1027, 1240, 1244
MflI	RGATCY	4 cut(s)	874, 934, 985, 1241
MhlI	GDGCHC	3 cut(s)	19, 463, 677
MluCI	AATT	5 cut(s)	490, 585, 630, 682, 866
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	2 cut(s)	177, 481
MseI	TTAA	6 cut(s)	681, 851, 870, 930, 966, 1287
MslI	CAYNNNNRTG	1 cut(s)	773
MspI	CCGG	3 cut(s)	273, 471, 882
MspR9I	CCNGG	7 cut(s)	273, 274, 606, 882, 883, 1004, 1277
MvaI	CCWGG	3 cut(s)	606, 1004, 1277
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	3 cut(s)	290, 340, 467
NciI	CCSGG	4 cut(s)	273, 274, 882, 883
NdeI	CATATG	1 cut(s)	1078
NdeII	GATC	5 cut(s)	874, 934, 985, 1087, 1241
NlaIII	CATG	5 cut(s)	551, 772, 904, 1000, 1222
NlaIV	GGNNCC	4 cut(s)	26, 270, 462, 780
NmeAIII	GCCGAG	1 cut(s)	886
PagI	TCATGA	2 cut(s)	547, 900
PciSI	GCTCTTC	1 cut(s)	1227
PfeI	GAWTC	5 cut(s)	122, 149, 392, 1177, 1212
PkrI	GCNGC	6 cut(s)	89, 92, 103, 342, 357, 367
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PsiI	TTATAA	2 cut(s)	566, 752
Psp124BI	GAGCTC	1 cut(s)	677
Psp6I	CCWGG	3 cut(s)	604, 1002, 1275
PspGI	CCWGG	3 cut(s)	604, 1002, 1275
PspN4I	GGNNCC	4 cut(s)	26, 270, 462, 780
PspPI	GGNCC	2 cut(s)	283, 427
PsuI	RGATCY	4 cut(s)	874, 934, 985, 1241
RsaI	GTAC	3 cut(s)	178, 245, 270
RsaNI	GTAC	3 cut(s)	177, 244, 269
RseI	CAYNNNNRTG	1 cut(s)	773
SacI	GAGCTC	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	1227
SaqAI	TTAA	6 cut(s)	681, 851, 870, 930, 966, 1287
SatI	GCNGC	6 cut(s)	88, 91, 102, 341, 356, 366
Sau3AI	GATC	5 cut(s)	874, 934, 985, 1087, 1241
Sau96I	GGNCC	2 cut(s)	283, 427
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	7 cut(s)	273, 274, 606, 882, 883, 1004, 1277
SduI	GDGCHC	3 cut(s)	19, 463, 677
SfaNI	GCATC	3 cut(s)	733, 942, 1273
SinI	GGWCC	1 cut(s)	427
SmaI	CCCGGG	2 cut(s)	274, 883
SmiMI	CAYNNNNRTG	1 cut(s)	773
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	5 cut(s)	490, 585, 630, 682, 866
SsiI	CCGC	9 cut(s)	85, 88, 91, 102, 126, 201, 334, 365, 480
SspMI	CTAG	1 cut(s)	1028
SstI	GAGCTC	1 cut(s)	677
StyD4I	CCNGG	7 cut(s)	271, 272, 604, 880, 881, 1002, 1275
StyI	CCWWGG	1 cut(s)	974
TaaI	ACNGT	4 cut(s)	176, 401, 445, 856
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	1 cut(s)	171
TasI	AATT	5 cut(s)	490, 585, 630, 682, 866
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	4 cut(s)	90, 93, 104, 368
TfiI	GAWTC	5 cut(s)	122, 149, 392, 1177, 1212
Tru1I	TTAA	6 cut(s)	681, 851, 870, 930, 966, 1287
Tru9I	TTAA	6 cut(s)	681, 851, 870, 930, 966, 1287
TseI	GCWGC	2 cut(s)	340, 355
TspDTI	ATGAA	7 cut(s)	17, 564, 827, 889, 903, 1138, 1245
TspGWI	ACGGA	1 cut(s)	541
TspMI	CCCGGG	2 cut(s)	272, 881
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	2 cut(s)	585, 630
XmaI	CCCGGG	2 cut(s)	272, 881
XspI	CTAG	1 cut(s)	1028
ZraI	GACGTC	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.